Mutagenetix > Incidental Mutation

Incidental Mutation 'R6058:Vmn2r7'

483039

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r7

Ensembl Gene

ENSMUSG00000116028

Gene Name

vomeronasal 2, receptor 7

Synonyms

4933425M15Rik

MMRRC Submission

044224-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.115) question?

Stock #

R6058 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

64598081-64627023 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 64632436 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Serine at position 9 (C9S)

Ref Sequence

ENSEMBL: ENSMUSP00000124192 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000161972]

AlphaFold

no structure available at present

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000050123

Predicted Effect

probably benign
Transcript: ENSMUST00000161972
AA Change: C9S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000124192
Gene: ENSMUSG00000062200
AA Change: C9S

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
Pfam:ANF_receptor	90	507	3.8e-77	PFAM
Pfam:NCD3G	549	602	3.4e-17	PFAM
Pfam:7tm_3	635	869	1.1e-47	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177146

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
Adamts20	G	A	15: 94,227,928 (GRCm39)	R1040*	probably null	Het
Akt1	A	G	12: 112,628,634 (GRCm39)	L52P	probably damaging	Het
Alk	T	A	17: 72,176,742 (GRCm39)	T1521S	probably benign	Het
Armt1	A	G	10: 4,403,488 (GRCm39)	N191S	probably damaging	Het
Ascl1	T	G	10: 87,328,562 (GRCm39)	N130T	probably damaging	Het
Bahcc1	T	G	11: 120,178,211 (GRCm39)	S2257A	probably damaging	Het
Cd86	T	C	16: 36,449,377 (GRCm39)	M7V	possibly damaging	Het
Cep57	A	T	9: 13,722,057 (GRCm39)	S304R	possibly damaging	Het
Cep57l1	A	T	10: 41,616,918 (GRCm39)	I123N	possibly damaging	Het
Cers6	A	G	2: 68,692,008 (GRCm39)	N10S	probably benign	Het
Chrng	A	G	1: 87,139,074 (GRCm39)	D475G	probably damaging	Het
Crabp1	T	A	9: 54,680,129 (GRCm39)	V128E	probably damaging	Het
Csnk2a1-ps3	T	C	1: 156,352,425 (GRCm39)	Y209H	probably damaging	Het
Dcdc2a	T	C	13: 25,240,354 (GRCm39)	V34A	possibly damaging	Het
Eeig1	G	A	2: 32,450,102 (GRCm39)	V117I	probably benign	Het
Fbn1	A	G	2: 125,308,532 (GRCm39)	C177R	possibly damaging	Het
Fras1	A	G	5: 96,857,844 (GRCm39)	D2046G	probably benign	Het
Glul	T	C	1: 153,783,087 (GRCm39)	I220T	probably benign	Het
Gpc6	C	T	14: 118,202,182 (GRCm39)	T464M	probably damaging	Het
Gpm6a	T	C	8: 55,511,833 (GRCm39)	S236P	probably damaging	Het
H2-K2	G	T	17: 34,218,304 (GRCm39)	T204K	probably benign	Het
H2-K2	T	C	17: 34,218,305 (GRCm39)	T204A	probably benign	Het
Hecw2	T	C	1: 53,963,135 (GRCm39)	H792R	possibly damaging	Het
Herc4	T	A	10: 63,110,821 (GRCm39)	I244K	possibly damaging	Het
Hsd11b2	G	T	8: 106,249,966 (GRCm39)	R359L	possibly damaging	Het
Igsf9	G	A	1: 172,312,456 (GRCm39)	E56K	probably damaging	Het
Il9	T	C	13: 56,628,495 (GRCm39)	T65A	possibly damaging	Het
Kcnip1	T	C	11: 33,592,478 (GRCm39)	T102A	probably damaging	Het
L3mbtl2	T	C	15: 81,551,555 (GRCm39)	S74P	probably benign	Het
Lamc2	C	T	1: 153,012,575 (GRCm39)	D700N	probably benign	Het
Ldb2	T	C	5: 44,633,905 (GRCm39)	T322A	possibly damaging	Het
Lix1	A	T	17: 17,664,012 (GRCm39)	I117F	probably damaging	Het
Map2	T	A	1: 66,454,573 (GRCm39)	D1154E	probably benign	Het
Marco	A	T	1: 120,404,435 (GRCm39)	I425N	probably damaging	Het
Mark4	T	C	7: 19,160,310 (GRCm39)	E650G	probably benign	Het
Mink1	A	G	11: 70,502,546 (GRCm39)	T1086A	possibly damaging	Het
Nxf1	G	A	19: 8,745,186 (GRCm39)	V479M	probably damaging	Het
Or10v1	T	A	19: 11,873,388 (GRCm39)	M1K	probably null	Het
Or11g2	T	C	14: 50,856,158 (GRCm39)	F160L	probably benign	Het
Or2n1e	A	G	17: 38,586,150 (GRCm39)	T163A	probably damaging	Het
Or5h23	T	C	16: 58,906,273 (GRCm39)	D191G	probably damaging	Het
Or5h23	A	G	16: 58,906,792 (GRCm39)	V18A	probably benign	Het
Or6c5	T	C	10: 129,074,329 (GRCm39)	S104P	probably damaging	Het
Otx2	T	C	14: 48,896,215 (GRCm39)	D281G	probably damaging	Het
Pcdhga3	A	T	18: 37,808,141 (GRCm39)	D198V	probably damaging	Het
Ppp1r13l	T	C	7: 19,104,500 (GRCm39)	V273A	probably benign	Het
Ppp6r2	T	C	15: 89,137,455 (GRCm39)		probably null	Het
Pramel51	T	A	12: 88,143,995 (GRCm39)	I273F	possibly damaging	Het
Prg4	C	T	1: 150,327,197 (GRCm39)	G873D	probably damaging	Het
Ptprq	T	C	10: 107,471,135 (GRCm39)	N1422S	probably benign	Het
Rbm27	A	T	18: 42,460,570 (GRCm39)	K839M	probably damaging	Het
Rere	A	T	4: 150,553,255 (GRCm39)	N149I	probably damaging	Het
Ret	A	G	6: 118,156,280 (GRCm39)	L340S	probably benign	Het
Sel1l2	T	A	2: 140,082,889 (GRCm39)	D583V	possibly damaging	Het
Shroom1	A	T	11: 53,354,308 (GRCm39)	D76V	possibly damaging	Het
Slc5a3	C	A	16: 91,875,963 (GRCm39)	S673R	probably benign	Het
Spink1	A	T	18: 43,861,247 (GRCm39)	I74N	probably damaging	Het
Tbc1d1	T	A	5: 64,435,352 (GRCm39)	S497T	probably damaging	Het
Trim3	C	T	7: 105,260,278 (GRCm39)	R741Q	probably damaging	Het
Ttn	A	G	2: 76,747,022 (GRCm39)	C4676R	probably benign	Het
Ubqlnl	G	A	7: 103,797,959 (GRCm39)	P513S	probably benign	Het
Unc13d	C	T	11: 115,964,394 (GRCm39)		probably null	Het
Vmn1r125	TGG	TG	7: 21,006,144 (GRCm39)		probably null	Het
Xdh	T	A	17: 74,213,264 (GRCm39)	M829L	probably damaging	Het
Zcrb1	A	G	15: 93,285,463 (GRCm39)	F173L	probably benign	Het
Zfp41	T	C	15: 75,490,372 (GRCm39)	V108A	probably damaging	Het
Zfp438	T	C	18: 5,213,209 (GRCm39)	E583G	probably damaging	Het
Zfp628	T	C	7: 4,923,917 (GRCm39)	L713P	probably damaging	Het
Zfp664	T	A	5: 124,963,042 (GRCm39)	C145*	probably null	Het
Zfp683	T	C	4: 133,786,042 (GRCm39)	C390R	probably damaging	Het
Zfp941	G	A	7: 140,392,010 (GRCm39)	P450S	probably damaging	Het

Other mutations in Vmn2r7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00961:Vmn2r7	APN	3	64,623,234 (GRCm39)	missense	possibly damaging	0.60
IGL01762:Vmn2r7	APN	3	64,598,856 (GRCm39)	missense	probably benign	0.39
IGL01903:Vmn2r7	APN	3	64,626,864 (GRCm39)	missense	probably benign	0.00
IGL02263:Vmn2r7	APN	3	64,598,868 (GRCm39)	missense	probably damaging	1.00
IGL02458:Vmn2r7	APN	3	64,600,446 (GRCm39)	missense	probably damaging	0.97
IGL02593:Vmn2r7	APN	3	64,600,443 (GRCm39)	missense	probably damaging	1.00
IGL02797:Vmn2r7	APN	3	64,598,666 (GRCm39)	missense	possibly damaging	0.80
IGL03047:Vmn2r7	UTSW	3	64,614,639 (GRCm39)	missense	possibly damaging	0.81
PIT4504001:Vmn2r7	UTSW	3	64,623,397 (GRCm39)	missense	probably benign	0.01
R0193:Vmn2r7	UTSW	3	64,598,460 (GRCm39)	missense	probably damaging	1.00
R0329:Vmn2r7	UTSW	3	64,598,439 (GRCm39)	missense	probably damaging	1.00
R0609:Vmn2r7	UTSW	3	64,623,900 (GRCm39)	missense	probably benign	0.44
R0735:Vmn2r7	UTSW	3	64,623,788 (GRCm39)	missense	probably benign	0.02
R0941:Vmn2r7	UTSW	3	64,624,000 (GRCm39)	missense	probably benign
R1065:Vmn2r7	UTSW	3	64,614,559 (GRCm39)	missense	possibly damaging	0.82
R1378:Vmn2r7	UTSW	3	64,599,025 (GRCm39)	missense	possibly damaging	0.59
R1445:Vmn2r7	UTSW	3	64,632,223 (GRCm39)	missense	probably benign	0.01
R1506:Vmn2r7	UTSW	3	64,614,500 (GRCm39)	missense	probably benign
R1509:Vmn2r7	UTSW	3	64,623,881 (GRCm39)	nonsense	probably null
R1519:Vmn2r7	UTSW	3	64,623,876 (GRCm39)	missense	possibly damaging	0.95
R1706:Vmn2r7	UTSW	3	64,598,880 (GRCm39)	missense	possibly damaging	0.79
R2113:Vmn2r7	UTSW	3	64,599,025 (GRCm39)	missense	possibly damaging	0.59
R3725:Vmn2r7	UTSW	3	64,632,412 (GRCm39)	missense	possibly damaging	0.65
R3874:Vmn2r7	UTSW	3	64,627,032 (GRCm39)	missense	possibly damaging	0.69
R3902:Vmn2r7	UTSW	3	64,626,937 (GRCm39)	missense	possibly damaging	0.46
R4084:Vmn2r7	UTSW	3	64,600,414 (GRCm39)	missense	probably benign	0.08
R4117:Vmn2r7	UTSW	3	64,623,138 (GRCm39)	intron	probably benign
R4333:Vmn2r7	UTSW	3	64,598,199 (GRCm39)	missense	probably damaging	1.00
R4551:Vmn2r7	UTSW	3	64,598,110 (GRCm39)	missense	possibly damaging	0.86
R4643:Vmn2r7	UTSW	3	64,623,825 (GRCm39)	missense	probably damaging	1.00
R4654:Vmn2r7	UTSW	3	64,626,864 (GRCm39)	missense	probably benign	0.00
R5091:Vmn2r7	UTSW	3	64,598,205 (GRCm39)	missense	possibly damaging	0.63
R5109:Vmn2r7	UTSW	3	64,598,088 (GRCm39)	missense	probably null	0.84
R5372:Vmn2r7	UTSW	3	64,623,745 (GRCm39)	missense	probably damaging	1.00
R5415:Vmn2r7	UTSW	3	64,623,658 (GRCm39)	missense	probably benign	0.07
R5740:Vmn2r7	UTSW	3	64,614,654 (GRCm39)	missense	probably benign
R5977:Vmn2r7	UTSW	3	64,623,464 (GRCm39)	nonsense	probably null
R6019:Vmn2r7	UTSW	3	64,623,643 (GRCm39)	missense	probably damaging	1.00
R6139:Vmn2r7	UTSW	3	64,623,339 (GRCm39)	missense	probably damaging	1.00
R6696:Vmn2r7	UTSW	3	64,614,495 (GRCm39)	missense	probably benign	0.01
R6887:Vmn2r7	UTSW	3	64,598,248 (GRCm39)	missense	probably damaging	1.00
R6918:Vmn2r7	UTSW	3	64,598,760 (GRCm39)	missense	probably benign	0.03
R6949:Vmn2r7	UTSW	3	64,598,542 (GRCm39)	missense	probably damaging	0.99
R6980:Vmn2r7	UTSW	3	64,623,987 (GRCm39)	missense	possibly damaging	0.67
R7196:Vmn2r7	UTSW	3	64,623,198 (GRCm39)	missense	probably benign	0.00
R7286:Vmn2r7	UTSW	3	64,598,301 (GRCm39)	missense	probably benign	0.00
R7455:Vmn2r7	UTSW	3	64,624,014 (GRCm39)	missense	probably benign
R7557:Vmn2r7	UTSW	3	64,632,394 (GRCm39)	missense	probably benign
R7864:Vmn2r7	UTSW	3	64,598,947 (GRCm39)	missense	probably benign	0.10
R8046:Vmn2r7	UTSW	3	64,614,479 (GRCm39)	missense	probably damaging	1.00
R8068:Vmn2r7	UTSW	3	64,623,507 (GRCm39)	missense	probably benign	0.01
R8252:Vmn2r7	UTSW	3	64,600,527 (GRCm39)	missense	probably benign	0.00
R8814:Vmn2r7	UTSW	3	64,623,984 (GRCm39)	missense	probably benign	0.14
R9497:Vmn2r7	UTSW	3	64,614,474 (GRCm39)	missense	probably benign	0.04
R9722:Vmn2r7	UTSW	3	64,598,407 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGTCACTTGTTGGCATGGTCC -3'
(R):5'- AGAGTGTTGCTCAGCTCCTATTC -3'

Sequencing Primer
(F):5'- GTTGGCATGGTCCTATAATGAACAG -3'
(R):5'- CCATAAATTGCAAGTGACTGTGAC -3'

Posted On

2017-07-14