Mutagenetix > Incidental Mutation

Incidental Mutation 'R6052:Dpep2'

484161

Institutional Source

Beutler Lab

Gene Symbol

Dpep2

Ensembl Gene

ENSMUSG00000115067

Gene Name

dipeptidase 2

Synonyms

F630103D06Rik, MBD-2

MMRRC Submission

044220-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.161) question?

Stock #

R6052 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106711577-106732658 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 106717270 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 162 (D162V)

Ref Sequence

ENSEMBL: ENSMUSP00000154250 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034373] [ENSMUST00000117555] [ENSMUST00000142898] [ENSMUST00000227363] [ENSMUST00000227778]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000034373
AA Change: D76V

PolyPhen 2 Score 0.186 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000034373
Gene: ENSMUSG00000053687
AA Change: D76V

Domain	Start	End	E-Value	Type
signal peptide	1	31	N/A	INTRINSIC
Pfam:Peptidase_M19	80	401	3.4e-112	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000081998
AA Change: D171V

SMART Domains

Protein: ENSMUSP00000080659
Gene: ENSMUSG00000115067
AA Change: D171V

Domain	Start	End	E-Value	Type
low complexity region	97	113	N/A	INTRINSIC
Pfam:Peptidase_M19	166	501	1.2e-104	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083297

Predicted Effect

probably benign
Transcript: ENSMUST00000117555

SMART Domains

Protein: ENSMUSP00000113877
Gene: ENSMUSG00000053687

Domain	Start	End	E-Value	Type
Pfam:Peptidase_M19	1	308	5.7e-107	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142898

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149057

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150001

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212917

Predicted Effect

possibly damaging
Transcript: ENSMUST00000227363
AA Change: D162V

PolyPhen 2 Score 0.911 (Sensitivity: 0.81; Specificity: 0.94)

Predicted Effect

probably benign
Transcript: ENSMUST00000227778

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 94.7%

Validation Efficiency

96% (80/83)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DPEP2 belongs to the membrane-bound dipeptidase (EC 3.4.13.19) family. These enzymes hydrolyze a variety of dipeptides, including leukotriene D4, the beta-lactam ring of some antibiotics, and cystinyl-bis-glycine (cys-bis-gly) formed during glutathione degradation (Habib et al., 2003 [PubMed 12738806]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca17	A	G	17: 24,537,165 (GRCm39)	F473L	probably benign	Het
Ankrd17	T	C	5: 90,401,691 (GRCm39)	I1449V	probably benign	Het
Aox4	T	A	1: 58,293,477 (GRCm39)	L943*	probably null	Het
Arap1	G	A	7: 101,053,240 (GRCm39)	V1257M	probably damaging	Het
B3gnt9	T	C	8: 105,981,230 (GRCm39)	S53G	probably benign	Het
Baiap3	A	T	17: 25,467,444 (GRCm39)		probably benign	Het
Canx	T	C	11: 50,187,946 (GRCm39)	D554G	possibly damaging	Het
Cbfa2t2	T	C	2: 154,352,501 (GRCm39)	V165A	probably damaging	Het
Ccdc17	C	T	4: 116,457,145 (GRCm39)		probably null	Het
Cdcp1	A	G	9: 123,014,396 (GRCm39)	I126T	probably benign	Het
Cdk13	A	T	13: 17,895,800 (GRCm39)	D1036E	probably damaging	Het
Cfap157	A	G	2: 32,669,863 (GRCm39)	L240P	probably damaging	Het
Clec18a	C	A	8: 111,805,448 (GRCm39)	E218*	probably null	Het
Col3a1	T	C	1: 45,384,173 (GRCm39)		probably benign	Het
Dennd4a	A	G	9: 64,794,227 (GRCm39)	E682G	probably damaging	Het
Dnah14	T	C	1: 181,494,052 (GRCm39)	V1736A	possibly damaging	Het
Drd3	C	A	16: 43,641,646 (GRCm39)	P321T	probably benign	Het
Egfr	A	G	11: 16,861,554 (GRCm39)	H1111R	probably benign	Het
Entpd1	T	C	19: 40,708,928 (GRCm39)	S58P	probably damaging	Het
Epha3	C	A	16: 63,423,967 (GRCm39)	V541L	possibly damaging	Het
Eri3	T	A	4: 117,421,825 (GRCm39)	D34E	probably damaging	Het
Eya1	T	C	1: 14,353,374 (GRCm39)	D58G	probably damaging	Het
Fat3	T	A	9: 15,833,975 (GRCm39)	S26C	probably null	Het
Fgl1	T	C	8: 41,653,548 (GRCm39)	D115G	probably damaging	Het
Fitm2	T	C	2: 163,312,036 (GRCm39)	Y59C	probably damaging	Het
Fras1	T	A	5: 96,912,725 (GRCm39)	I3343N	probably damaging	Het
Gba2	C	A	4: 43,568,330 (GRCm39)	C679F	probably damaging	Het
Glis2	G	A	16: 4,431,603 (GRCm39)		probably benign	Het
Gm5150	T	A	3: 16,044,917 (GRCm39)	I103F	probably damaging	Het
Hhipl2	T	C	1: 183,204,965 (GRCm39)	S313P	possibly damaging	Het
Hmgcs1	A	G	13: 120,166,995 (GRCm39)	D474G	probably benign	Het
Homer3	C	T	8: 70,744,076 (GRCm39)	Q267*	probably null	Het
Hsd17b8	A	G	17: 34,246,429 (GRCm39)	L118P	probably damaging	Het
Igkv8-28	C	T	6: 70,120,673 (GRCm39)	G90D	probably damaging	Het
Kalrn	T	A	16: 34,181,255 (GRCm39)	I128F	probably damaging	Het
Krt4	A	G	15: 101,831,194 (GRCm39)		probably null	Het
Lamb2	T	A	9: 108,364,811 (GRCm39)	C1188*	probably null	Het
Lsr	A	T	7: 30,658,042 (GRCm39)	M355K	probably damaging	Het
Map3k11	T	G	19: 5,747,430 (GRCm39)	D555E	probably benign	Het
Myocd	A	G	11: 65,087,082 (GRCm39)	Y282H	probably damaging	Het
Nae1	T	C	8: 105,261,176 (GRCm39)	I7M	probably benign	Het
Nprl3	G	T	11: 32,205,453 (GRCm39)	H102N	possibly damaging	Het
Nup62	T	A	7: 44,478,464 (GRCm39)	F160I	possibly damaging	Het
Or10w1	C	A	19: 13,631,871 (GRCm39)	P26Q	possibly damaging	Het
Or2d3c	A	T	7: 106,525,896 (GRCm39)	F257I	probably benign	Het
Or2r2	T	A	6: 42,463,588 (GRCm39)	T180S	possibly damaging	Het
Or5p76	A	G	7: 108,122,945 (GRCm39)	S71P	probably benign	Het
Or6c35	C	A	10: 129,169,071 (GRCm39)	T107K	possibly damaging	Het
Osbpl10	T	C	9: 114,896,383 (GRCm39)		probably null	Het
Pcdh9	C	T	14: 94,123,282 (GRCm39)	V963I	probably benign	Het
Phf12	A	G	11: 77,909,044 (GRCm39)	R375G	probably benign	Het
Piezo1	G	A	8: 123,233,008 (GRCm39)	T108M	probably damaging	Het
Plxnc1	T	A	10: 94,779,635 (GRCm39)	Q269L	probably benign	Het
Pomgnt1	T	A	4: 116,008,799 (GRCm39)	N11K	possibly damaging	Het
Pramel22	T	A	4: 143,382,222 (GRCm39)	D158V	probably damaging	Het
Prkd1	A	T	12: 50,413,083 (GRCm39)		probably null	Het
Prpf40a	T	C	2: 53,049,293 (GRCm39)	T190A	probably benign	Het
Prrc2b	A	C	2: 32,102,297 (GRCm39)	H790P	possibly damaging	Het
Rest	T	G	5: 77,429,027 (GRCm39)	V482G	probably benign	Het
Ros1	T	A	10: 52,039,999 (GRCm39)	I322L	probably benign	Het
Rpl18	G	A	7: 45,369,554 (GRCm39)		probably benign	Het
Rsad2	G	A	12: 26,500,577 (GRCm39)	H237Y	probably benign	Het
Sbf2	A	G	7: 110,040,741 (GRCm39)	L362S	probably damaging	Het
Sgsm3	A	G	15: 80,893,464 (GRCm39)	T409A	probably benign	Het
Slc16a14	T	C	1: 84,890,430 (GRCm39)	T292A	possibly damaging	Het
Spg11	T	G	2: 121,927,837 (GRCm39)	K649T	probably damaging	Het
Srprb	T	A	9: 103,067,415 (GRCm39)	I268F	possibly damaging	Het
Tap2	G	A	17: 34,433,683 (GRCm39)	G566S	probably damaging	Het
Tecpr2	T	C	12: 110,885,325 (GRCm39)	V168A	possibly damaging	Het
Tln1	G	C	4: 43,555,052 (GRCm39)	F259L	probably damaging	Het
Tmem181a	T	A	17: 6,330,890 (GRCm39)	L50H	probably damaging	Het
Tshz1	A	G	18: 84,032,194 (GRCm39)	I738T	probably damaging	Het
Tspan12	T	C	6: 21,772,637 (GRCm39)	E304G	probably benign	Het
Urb1	C	T	16: 90,559,271 (GRCm39)	G1671S	probably damaging	Het
Vmn2r2	T	C	3: 64,024,782 (GRCm39)	S600G	possibly damaging	Het
Wnt3	C	A	11: 103,699,000 (GRCm39)	Y35*	probably null	Het
Xpo7	T	C	14: 70,921,159 (GRCm39)	Y603C	possibly damaging	Het
Zfp457	G	A	13: 67,442,015 (GRCm39)	H91Y	probably damaging	Het
Zfp664	T	A	5: 124,963,250 (GRCm39)	C215S	unknown	Het
Zfp882	G	A	8: 72,668,349 (GRCm39)	G392D	probably benign	Het

Other mutations in Dpep2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00590:Dpep2	APN	8	106,715,453 (GRCm39)	missense	probably damaging	1.00
IGL01160:Dpep2	APN	8	106,713,076 (GRCm39)	missense	possibly damaging	0.95
IGL02071:Dpep2	APN	8	106,711,776 (GRCm39)	missense	probably benign	0.01
IGL02441:Dpep2	APN	8	106,711,723 (GRCm39)	missense	probably benign	0.00
IGL02517:Dpep2	APN	8	106,715,388 (GRCm39)	missense	probably damaging	1.00
IGL02836:Dpep2	APN	8	106,717,227 (GRCm39)	critical splice donor site	probably null
G1citation:Dpep2	UTSW	8	106,711,873 (GRCm39)	missense	probably benign	0.01
R0504:Dpep2	UTSW	8	106,716,620 (GRCm39)	missense	probably benign	0.29
R1866:Dpep2	UTSW	8	106,716,080 (GRCm39)	critical splice donor site	probably null
R1982:Dpep2	UTSW	8	106,716,087 (GRCm39)	nonsense	probably null
R2172:Dpep2	UTSW	8	106,715,630 (GRCm39)	missense	possibly damaging	0.88
R2399:Dpep2	UTSW	8	106,716,224 (GRCm39)	missense	probably damaging	1.00
R4369:Dpep2	UTSW	8	106,711,707 (GRCm39)	missense	probably benign	0.00
R4499:Dpep2	UTSW	8	106,712,114 (GRCm39)	missense	probably benign	0.32
R4500:Dpep2	UTSW	8	106,712,114 (GRCm39)	missense	probably benign	0.32
R4774:Dpep2	UTSW	8	106,717,388 (GRCm39)	missense	possibly damaging	0.48
R5114:Dpep2	UTSW	8	106,712,825 (GRCm39)	missense	probably damaging	1.00
R5727:Dpep2	UTSW	8	106,713,075 (GRCm39)	missense	probably benign	0.00
R6177:Dpep2	UTSW	8	106,712,831 (GRCm39)	missense	probably damaging	1.00
R6658:Dpep2	UTSW	8	106,716,542 (GRCm39)	missense	probably benign	0.01
R6822:Dpep2	UTSW	8	106,711,873 (GRCm39)	missense	probably benign	0.01
R7854:Dpep2	UTSW	8	106,716,160 (GRCm39)	missense
R7866:Dpep2	UTSW	8	106,716,113 (GRCm39)	missense
R8169:Dpep2	UTSW	8	106,722,849 (GRCm39)	missense
R9047:Dpep2	UTSW	8	106,715,944 (GRCm39)	missense
R9203:Dpep2	UTSW	8	106,712,885 (GRCm39)	missense	probably damaging	1.00
R9222:Dpep2	UTSW	8	106,723,016 (GRCm39)	missense
V7732:Dpep2	UTSW	8	106,715,892 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGGACTCCTCACTAGAGAAG -3'
(R):5'- GCCATGGGCTTTCAGTGTTC -3'

Sequencing Primer
(F):5'- AGAGGTCACCCACTGCTGATAG -3'
(R):5'- CCTGTTGGTGCTGCTGC -3'

Posted On

2017-07-14