Incidental Mutation 'R6117:Agbl1'
ID 485158
Institutional Source Beutler Lab
Gene Symbol Agbl1
Ensembl Gene ENSMUSG00000025754
Gene Name ATP/GTP binding protein-like 1
Synonyms Nna1-l1, Ccp4, EG244071
MMRRC Submission 044266-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6117 (G1)
Quality Score 225.009
Status Not validated
Chromosome 7
Chromosomal Location 75879635-76774446 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 76348534 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 625 (Y625C)
Ref Sequence ENSEMBL: ENSMUSP00000103066 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026854] [ENSMUST00000107442] [ENSMUST00000156166]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000026854
AA Change: Y625C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000026854
Gene: ENSMUSG00000025754
AA Change: Y625C

DomainStartEndE-ValueType
low complexity region 48 64 N/A INTRINSIC
Pfam:Peptidase_M14 493 631 4.4e-22 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000107442
AA Change: Y625C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000103066
Gene: ENSMUSG00000025754
AA Change: Y625C

DomainStartEndE-ValueType
low complexity region 48 64 N/A INTRINSIC
Pfam:Peptidase_M14 494 754 3.1e-27 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000156166
AA Change: Y877C
SMART Domains Protein: ENSMUSP00000119721
Gene: ENSMUSG00000025754
AA Change: Y877C

DomainStartEndE-ValueType
low complexity region 254 270 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000206401
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.3%
  • 20x: 95.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Polyglutamylation is a reversible posttranslational modification catalyzed by polyglutamylases that results in the addition of glutamate side chains on the modified protein. This gene encodes a glutamate decarboxylase that catalyzes the deglutamylation of polyglutamylated proteins. Mutations in this gene result in dominant late-onset Fuchs corneal dystrophy. [provided by RefSeq, Nov 2013]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal response to herpes simplex virus (HSV) and vaccinia virus (VACV) infection. [provided by MGI curators]
Allele List at MGI

All alleles(2) : Targeted(2)

Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankmy1 A G 1: 92,788,996 (GRCm39) probably benign Het
Apmap T C 2: 150,442,252 (GRCm39) T41A probably benign Het
Cacna1a A G 8: 85,341,350 (GRCm39) Y1804C probably damaging Het
Cacna1e A T 1: 154,437,537 (GRCm39) I333N possibly damaging Het
Cdsn C A 17: 35,865,931 (GRCm39) S153R unknown Het
Celsr1 A T 15: 85,816,612 (GRCm39) M1777K probably benign Het
Cmtr1 A G 17: 29,901,139 (GRCm39) M249V probably benign Het
Cmya5 A G 13: 93,231,674 (GRCm39) L1138P probably damaging Het
Crim1 A C 17: 78,610,517 (GRCm39) D324A probably damaging Het
Dmap1 T A 4: 117,532,732 (GRCm39) probably null Het
Dnah17 T C 11: 118,010,397 (GRCm39) Y307C probably benign Het
Dnah5 T A 15: 28,270,566 (GRCm39) L956H probably damaging Het
Enpp3 C T 10: 24,663,750 (GRCm39) S537N probably damaging Het
Eya3 T A 4: 132,439,173 (GRCm39) L323Q probably damaging Het
Fads3 A T 19: 10,031,631 (GRCm39) H226L probably damaging Het
Flrt3 T A 2: 140,502,365 (GRCm39) D421V possibly damaging Het
Frmd4a T C 2: 4,607,060 (GRCm39) V370A possibly damaging Het
Gapvd1 T C 2: 34,580,471 (GRCm39) probably null Het
Gm2178 T C 14: 26,235,995 (GRCm39) probably benign Het
Gm5592 A G 7: 40,937,888 (GRCm39) N390S probably benign Het
Hoxa10 T A 6: 52,211,800 (GRCm39) R39* probably null Het
Kcnj1 A G 9: 32,308,478 (GRCm39) T281A probably damaging Het
Myo10 T C 15: 25,805,745 (GRCm39) Y1709H probably benign Het
Nacad T C 11: 6,549,810 (GRCm39) D1127G probably benign Het
Naip1 T A 13: 100,581,245 (GRCm39) M1L probably damaging Het
Or10ak9 A T 4: 118,726,341 (GRCm39) Y121F probably benign Het
Or6c215 G A 10: 129,637,689 (GRCm39) A235V probably damaging Het
Or6c215 C A 10: 129,637,690 (GRCm39) A235S probably damaging Het
Pcdhb12 G A 18: 37,568,695 (GRCm39) probably benign Het
Pde1b T C 15: 103,429,909 (GRCm39) V134A probably damaging Het
Plxnb2 A T 15: 89,042,203 (GRCm39) D1600E probably benign Het
Prss54 T A 8: 96,292,086 (GRCm39) probably null Het
Ryr3 A T 2: 112,465,741 (GRCm39) I4757N probably damaging Het
Slc1a6 T C 10: 78,624,822 (GRCm39) Y76H possibly damaging Het
Slco3a1 C T 7: 73,968,254 (GRCm39) D489N probably benign Het
Sox15 G T 11: 69,546,716 (GRCm39) G173V possibly damaging Het
Stard3 T C 11: 98,263,088 (GRCm39) S48P probably damaging Het
Stk32c G A 7: 138,702,839 (GRCm39) Q67* probably null Het
Svil T A 18: 5,116,016 (GRCm39) W2101R probably damaging Het
Taar7e T A 10: 23,914,427 (GRCm39) Y306N probably damaging Het
Tarbp1 T A 8: 127,154,280 (GRCm39) M1485L probably benign Het
Togaram1 A G 12: 65,014,261 (GRCm39) D504G probably damaging Het
Trrap T C 5: 144,739,771 (GRCm39) L1091S possibly damaging Het
Unc80 A G 1: 66,714,226 (GRCm39) E2856G possibly damaging Het
Usp47 C T 7: 111,687,139 (GRCm39) T699M probably damaging Het
Other mutations in Agbl1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01567:Agbl1 APN 7 76,071,628 (GRCm39) missense probably benign 0.01
IGL01650:Agbl1 APN 7 76,070,067 (GRCm39) missense probably damaging 1.00
IGL02244:Agbl1 APN 7 76,416,120 (GRCm39) missense probably damaging 1.00
IGL03088:Agbl1 APN 7 76,369,890 (GRCm39) missense probably benign 0.12
IGL03143:Agbl1 APN 7 76,069,793 (GRCm39) nonsense probably null
IGL03306:Agbl1 APN 7 76,239,252 (GRCm39) missense probably damaging 1.00
R0001:Agbl1 UTSW 7 76,069,611 (GRCm39) missense probably damaging 0.98
R0045:Agbl1 UTSW 7 76,348,588 (GRCm39) critical splice donor site probably null
R0045:Agbl1 UTSW 7 76,348,588 (GRCm39) critical splice donor site probably null
R0541:Agbl1 UTSW 7 76,058,993 (GRCm39) missense probably benign 0.22
R1889:Agbl1 UTSW 7 76,239,129 (GRCm39) missense probably damaging 1.00
R2089:Agbl1 UTSW 7 76,239,248 (GRCm39) missense probably damaging 0.98
R2091:Agbl1 UTSW 7 76,239,248 (GRCm39) missense probably damaging 0.98
R2091:Agbl1 UTSW 7 76,239,248 (GRCm39) missense probably damaging 0.98
R2127:Agbl1 UTSW 7 76,069,628 (GRCm39) missense possibly damaging 0.64
R2148:Agbl1 UTSW 7 76,064,465 (GRCm39) splice site probably null
R2229:Agbl1 UTSW 7 76,083,126 (GRCm39) missense probably benign 0.43
R2243:Agbl1 UTSW 7 76,068,470 (GRCm39) missense possibly damaging 0.93
R2255:Agbl1 UTSW 7 76,071,932 (GRCm39) missense probably damaging 1.00
R2411:Agbl1 UTSW 7 76,369,898 (GRCm39) missense probably damaging 1.00
R2426:Agbl1 UTSW 7 76,071,650 (GRCm39) missense probably damaging 1.00
R2508:Agbl1 UTSW 7 76,239,298 (GRCm39) critical splice donor site probably null
R2910:Agbl1 UTSW 7 76,069,586 (GRCm39) missense probably benign 0.13
R2919:Agbl1 UTSW 7 76,064,406 (GRCm39) missense probably damaging 1.00
R3056:Agbl1 UTSW 7 76,416,232 (GRCm39) missense possibly damaging 0.60
R3153:Agbl1 UTSW 7 76,369,944 (GRCm39) missense probably damaging 1.00
R3770:Agbl1 UTSW 7 76,075,677 (GRCm39) critical splice donor site probably null
R3825:Agbl1 UTSW 7 76,069,715 (GRCm39) missense probably damaging 0.99
R4632:Agbl1 UTSW 7 76,063,433 (GRCm39) missense probably benign 0.00
R4857:Agbl1 UTSW 7 76,069,583 (GRCm39) missense probably benign 0.03
R4943:Agbl1 UTSW 7 76,069,764 (GRCm39) missense probably benign 0.01
R5055:Agbl1 UTSW 7 76,063,325 (GRCm39) missense probably damaging 1.00
R5071:Agbl1 UTSW 7 76,071,665 (GRCm39) missense probably damaging 1.00
R5072:Agbl1 UTSW 7 76,071,665 (GRCm39) missense probably damaging 1.00
R5074:Agbl1 UTSW 7 76,071,665 (GRCm39) missense probably damaging 1.00
R5095:Agbl1 UTSW 7 76,369,881 (GRCm39) missense probably damaging 0.96
R5133:Agbl1 UTSW 7 76,071,904 (GRCm39) missense probably benign 0.21
R5576:Agbl1 UTSW 7 75,984,985 (GRCm39) missense probably benign 0.03
R5665:Agbl1 UTSW 7 76,239,251 (GRCm39) missense probably damaging 1.00
R5849:Agbl1 UTSW 7 75,974,846 (GRCm39) missense probably benign 0.35
R5924:Agbl1 UTSW 7 76,058,982 (GRCm39) missense probably benign 0.12
R6044:Agbl1 UTSW 7 75,967,868 (GRCm39) missense possibly damaging 0.56
R6144:Agbl1 UTSW 7 76,069,832 (GRCm39) missense probably benign 0.02
R6368:Agbl1 UTSW 7 76,069,578 (GRCm39) missense probably benign 0.25
R6806:Agbl1 UTSW 7 76,075,669 (GRCm39) missense probably damaging 1.00
R7455:Agbl1 UTSW 7 76,074,503 (GRCm39) missense unknown
R7459:Agbl1 UTSW 7 76,069,814 (GRCm39) missense not run
R7485:Agbl1 UTSW 7 76,239,241 (GRCm39) missense unknown
R7516:Agbl1 UTSW 7 76,075,669 (GRCm39) missense probably damaging 1.00
R7539:Agbl1 UTSW 7 76,075,677 (GRCm39) critical splice donor site probably null
R7561:Agbl1 UTSW 7 76,348,509 (GRCm39) missense unknown
R7630:Agbl1 UTSW 7 76,535,904 (GRCm39) missense unknown
R7655:Agbl1 UTSW 7 76,059,080 (GRCm39) missense
R7656:Agbl1 UTSW 7 76,059,080 (GRCm39) missense
R7658:Agbl1 UTSW 7 76,416,117 (GRCm39) missense unknown
R7681:Agbl1 UTSW 7 76,094,649 (GRCm39) missense unknown
R7694:Agbl1 UTSW 7 76,348,513 (GRCm39) missense unknown
R7773:Agbl1 UTSW 7 76,348,585 (GRCm39) missense unknown
R7981:Agbl1 UTSW 7 76,094,588 (GRCm39) missense unknown
R8208:Agbl1 UTSW 7 76,369,916 (GRCm39) missense unknown
R8317:Agbl1 UTSW 7 76,071,929 (GRCm39) missense unknown
R8406:Agbl1 UTSW 7 76,068,415 (GRCm39) missense
R8432:Agbl1 UTSW 7 76,774,434 (GRCm39) missense unknown
R8704:Agbl1 UTSW 7 76,239,302 (GRCm39) splice site probably benign
R8830:Agbl1 UTSW 7 75,985,059 (GRCm39) missense
R8985:Agbl1 UTSW 7 75,969,904 (GRCm39) missense
R9113:Agbl1 UTSW 7 76,239,225 (GRCm39) missense unknown
R9170:Agbl1 UTSW 7 75,985,069 (GRCm39) missense
R9229:Agbl1 UTSW 7 76,774,270 (GRCm39) missense unknown
R9255:Agbl1 UTSW 7 76,416,150 (GRCm39) missense unknown
R9391:Agbl1 UTSW 7 76,071,602 (GRCm39) missense unknown
R9646:Agbl1 UTSW 7 76,075,648 (GRCm39) missense unknown
Z1088:Agbl1 UTSW 7 76,069,652 (GRCm39) missense probably benign 0.00
Z1176:Agbl1 UTSW 7 76,068,433 (GRCm39) missense
Z1177:Agbl1 UTSW 7 76,369,954 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- ACAGATCTGCAGCTTCCTG -3'
(R):5'- AAAGTTTCCCACATATGTTTGTCCC -3'

Sequencing Primer
(F):5'- AGCTTCCTGGACATCTGGAG -3'
(R):5'- CCACATATGTTTGTCCCCTTTG -3'
Posted On 2017-08-16