Incidental Mutation 'R6101:Rpn2'
| ID |
485237 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rpn2
|
| Ensembl Gene |
ENSMUSG00000027642 |
| Gene Name |
ribophorin II |
| Synonyms |
1300012C06Rik, Rpn-2 |
| MMRRC Submission |
044251-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R6101 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
157121018-157168238 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to A
at 157152108 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000112081
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029171]
[ENSMUST00000029171]
[ENSMUST00000116380]
|
| AlphaFold |
Q9DBG6 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000029171
|
| SMART Domains |
Protein: ENSMUSP00000029171
Gene: ENSMUSG00000027642
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribophorin_II
|
2 |
71 |
1.5e-15 |
PFAM |
|
Pfam:Ribophorin_II
|
68 |
596 |
3.5e-247 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000029171
|
| SMART Domains |
Protein: ENSMUSP00000029171
Gene: ENSMUSG00000027642
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribophorin_II
|
2 |
71 |
1.5e-15 |
PFAM |
|
Pfam:Ribophorin_II
|
68 |
596 |
3.5e-247 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000116380
|
| SMART Domains |
Protein: ENSMUSP00000112081
Gene: ENSMUSG00000027642
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribophorin_II
|
9 |
627 |
1.8e-223 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123639
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126248
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127252
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.2%
- 20x: 95.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type I integral membrane protein found only in the rough endoplasmic reticulum. The encoded protein is part of an N-oligosaccharyl transferase complex that links high mannose oligosaccharides to asparagine residues found in the Asn-X-Ser/Thr consensus motif of nascent polypeptide chains. This protein is similar in sequence to the yeast oligosaccharyl transferase subunit SWP1. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam9 |
A |
T |
8: 25,460,775 (GRCm39) |
C570S |
probably damaging |
Het |
| Adh6b |
T |
A |
3: 138,063,471 (GRCm39) |
I350K |
possibly damaging |
Het |
| Ahnak |
G |
A |
19: 8,981,463 (GRCm39) |
V916I |
probably benign |
Het |
| Aldh4a1 |
C |
T |
4: 139,365,806 (GRCm39) |
P266S |
possibly damaging |
Het |
| Arhgap11a |
G |
A |
2: 113,665,219 (GRCm39) |
R460* |
probably null |
Het |
| Chl1 |
A |
T |
6: 103,669,993 (GRCm39) |
D477V |
probably damaging |
Het |
| Clstn3 |
A |
T |
6: 124,438,629 (GRCm39) |
L45Q |
probably damaging |
Het |
| Cnot7 |
C |
T |
8: 40,963,078 (GRCm39) |
R32Q |
probably benign |
Het |
| Csrnp1 |
T |
C |
9: 119,802,551 (GRCm39) |
D220G |
probably damaging |
Het |
| Cyb5a |
G |
A |
18: 84,889,718 (GRCm39) |
R49Q |
possibly damaging |
Het |
| Fblim1 |
G |
A |
4: 141,312,033 (GRCm39) |
R231C |
probably damaging |
Het |
| Glul |
T |
A |
1: 153,782,177 (GRCm39) |
Y137* |
probably null |
Het |
| Gm10549 |
C |
A |
18: 33,597,358 (GRCm39) |
|
probably benign |
Het |
| Igha |
T |
A |
12: 113,220,017 (GRCm39) |
|
probably benign |
Het |
| Kif2b |
A |
G |
11: 91,466,814 (GRCm39) |
S490P |
probably benign |
Het |
| Kxd1 |
A |
T |
8: 70,972,589 (GRCm39) |
N33K |
probably benign |
Het |
| Lrrk2 |
T |
C |
15: 91,607,338 (GRCm39) |
I567T |
probably benign |
Het |
| Man2a2 |
T |
C |
7: 80,016,749 (GRCm39) |
D355G |
probably damaging |
Het |
| Map6 |
T |
C |
7: 98,917,314 (GRCm39) |
V29A |
probably damaging |
Het |
| Mical3 |
A |
T |
6: 121,010,671 (GRCm39) |
V437D |
probably damaging |
Het |
| Mief1 |
T |
C |
15: 80,133,941 (GRCm39) |
Y333H |
probably benign |
Het |
| Or12j4 |
T |
A |
7: 140,046,432 (GRCm39) |
V106D |
probably benign |
Het |
| Or4f7 |
A |
G |
2: 111,644,598 (GRCm39) |
F158L |
probably benign |
Het |
| Or8b52 |
A |
G |
9: 38,576,916 (GRCm39) |
S75P |
probably damaging |
Het |
| Or8d2b |
T |
C |
9: 38,788,604 (GRCm39) |
L44P |
possibly damaging |
Het |
| Pak1ip1 |
T |
A |
13: 41,158,361 (GRCm39) |
L78Q |
probably damaging |
Het |
| Pikfyve |
A |
G |
1: 65,303,504 (GRCm39) |
|
probably null |
Het |
| Pinlyp |
C |
T |
7: 24,245,405 (GRCm39) |
R5K |
possibly damaging |
Het |
| Pkd1l3 |
A |
G |
8: 110,367,478 (GRCm39) |
D1225G |
probably damaging |
Het |
| Pnma8b |
T |
A |
7: 16,680,493 (GRCm39) |
S492R |
probably benign |
Het |
| Postn |
A |
G |
3: 54,279,641 (GRCm39) |
|
probably null |
Het |
| Ptprq |
A |
G |
10: 107,416,127 (GRCm39) |
Y1724H |
possibly damaging |
Het |
| Scn5a |
A |
G |
9: 119,351,716 (GRCm39) |
V755A |
probably damaging |
Het |
| Slc22a30 |
T |
C |
19: 8,315,232 (GRCm39) |
|
probably null |
Het |
| Specc1l |
T |
C |
10: 75,084,466 (GRCm39) |
S730P |
probably damaging |
Het |
| Steap2 |
T |
A |
5: 5,725,891 (GRCm39) |
I378F |
possibly damaging |
Het |
| Tdrd12 |
A |
T |
7: 35,180,558 (GRCm39) |
Y818* |
probably null |
Het |
| Thbs4 |
G |
T |
13: 92,911,993 (GRCm39) |
Q246K |
possibly damaging |
Het |
| Tnfsf10 |
A |
G |
3: 27,389,698 (GRCm39) |
Y253C |
probably damaging |
Het |
| Tnpo3 |
G |
T |
6: 29,588,042 (GRCm39) |
C125* |
probably null |
Het |
| Trim58 |
A |
G |
11: 58,542,441 (GRCm39) |
N467S |
probably benign |
Het |
| Trpm6 |
C |
T |
19: 18,831,112 (GRCm39) |
R1326* |
probably null |
Het |
| Zc3hav1l |
A |
G |
6: 38,270,012 (GRCm39) |
V279A |
probably benign |
Het |
| Zfp618 |
A |
T |
4: 63,051,478 (GRCm39) |
Q753L |
probably benign |
Het |
| Zfp647 |
G |
A |
15: 76,796,285 (GRCm39) |
P125L |
probably damaging |
Het |
| Zkscan17 |
A |
T |
11: 59,394,401 (GRCm39) |
C67S |
probably damaging |
Het |
|
| Other mutations in Rpn2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00547:Rpn2
|
APN |
2 |
157,156,833 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01894:Rpn2
|
APN |
2 |
157,136,093 (GRCm39) |
missense |
probably benign |
0.45 |
|
IGL02104:Rpn2
|
APN |
2 |
157,163,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02368:Rpn2
|
APN |
2 |
157,144,328 (GRCm39) |
missense |
probably benign |
|
|
IGL02819:Rpn2
|
APN |
2 |
157,158,130 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0932:Rpn2
|
UTSW |
2 |
157,125,691 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R1666:Rpn2
|
UTSW |
2 |
157,136,075 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1668:Rpn2
|
UTSW |
2 |
157,136,075 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1713:Rpn2
|
UTSW |
2 |
157,156,888 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2276:Rpn2
|
UTSW |
2 |
157,152,208 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R2279:Rpn2
|
UTSW |
2 |
157,152,208 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R3409:Rpn2
|
UTSW |
2 |
157,132,572 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R3411:Rpn2
|
UTSW |
2 |
157,132,572 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R3777:Rpn2
|
UTSW |
2 |
157,141,477 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4004:Rpn2
|
UTSW |
2 |
157,159,928 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4575:Rpn2
|
UTSW |
2 |
157,137,244 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4613:Rpn2
|
UTSW |
2 |
157,144,345 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4856:Rpn2
|
UTSW |
2 |
157,159,964 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4886:Rpn2
|
UTSW |
2 |
157,159,964 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5491:Rpn2
|
UTSW |
2 |
157,139,303 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5526:Rpn2
|
UTSW |
2 |
157,165,187 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5633:Rpn2
|
UTSW |
2 |
157,125,516 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R5718:Rpn2
|
UTSW |
2 |
157,163,747 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5772:Rpn2
|
UTSW |
2 |
157,137,265 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6618:Rpn2
|
UTSW |
2 |
157,163,781 (GRCm39) |
missense |
probably benign |
|
|
R6698:Rpn2
|
UTSW |
2 |
157,139,330 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R8882:Rpn2
|
UTSW |
2 |
157,136,102 (GRCm39) |
missense |
probably benign |
|
|
R8953:Rpn2
|
UTSW |
2 |
157,163,746 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9085:Rpn2
|
UTSW |
2 |
157,125,567 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R9124:Rpn2
|
UTSW |
2 |
157,139,458 (GRCm39) |
missense |
probably benign |
|
|
R9368:Rpn2
|
UTSW |
2 |
157,141,500 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9638:Rpn2
|
UTSW |
2 |
157,125,566 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTCTCGAAGACTCCTATCGTAG -3'
(R):5'- CACAGTGCCTCAGTATGCTC -3'
Sequencing Primer
(F):5'- AAGTGCAAGCTCATCCTTGG -3'
(R):5'- AGTATGCTCTTTCCAGCTCTGAAG -3'
|
| Posted On |
2017-08-16 |
Incidental Mutation