Mutagenetix > Incidental Mutation

Incidental Mutation 'R6107:Slc25a34'

485550

Institutional Source

Beutler Lab

Gene Symbol

Slc25a34

Ensembl Gene

ENSMUSG00000040740

Gene Name

solute carrier family 25, member 34

Synonyms

LOC384071

MMRRC Submission

044257-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.071) question?

Stock #

R6107 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

141346135-141351132 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 141350806 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 68 (V68M)

Ref Sequence

ENSEMBL: ENSMUSP00000039188 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030751] [ENSMUST00000038661] [ENSMUST00000084203] [ENSMUST00000143154]

AlphaFold

A2ADF7

Predicted Effect

probably benign
Transcript: ENSMUST00000030751

SMART Domains

Protein: ENSMUSP00000030751
Gene: ENSMUSG00000028917

Domain	Start	End	E-Value	Type
RUN	93	156	3.18e-21	SMART
low complexity region	230	246	N/A	INTRINSIC
low complexity region	295	307	N/A	INTRINSIC
low complexity region	459	469	N/A	INTRINSIC
low complexity region	485	495	N/A	INTRINSIC
low complexity region	505	538	N/A	INTRINSIC
Blast:PH	596	656	7e-31	BLAST
PH	766	869	2.43e-12	SMART
Blast:PH	879	960	6e-9	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000038661
AA Change: V68M

PolyPhen 2 Score 0.034 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000039188
Gene: ENSMUSG00000040740
AA Change: V68M

Domain	Start	End	E-Value	Type
Pfam:Mito_carr	16	111	2.2e-14	PFAM
Pfam:Mito_carr	113	213	7.6e-18	PFAM
Pfam:Mito_carr	217	314	9.3e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000084203

SMART Domains

Protein: ENSMUSP00000081221
Gene: ENSMUSG00000028917

Domain	Start	End	E-Value	Type
RUN	93	156	3.18e-21	SMART
low complexity region	250	266	N/A	INTRINSIC
low complexity region	315	327	N/A	INTRINSIC
low complexity region	479	489	N/A	INTRINSIC
low complexity region	505	515	N/A	INTRINSIC
low complexity region	525	558	N/A	INTRINSIC
Blast:PH	616	676	7e-31	BLAST
PH	786	889	2.43e-12	SMART
Blast:PH	899	980	6e-9	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136102

Predicted Effect

probably benign
Transcript: ENSMUST00000143154

SMART Domains

Protein: ENSMUSP00000120973
Gene: ENSMUSG00000043085

Domain	Start	End	E-Value	Type
low complexity region	3	16	N/A	INTRINSIC
transmembrane domain	31	53	N/A	INTRINSIC
transmembrane domain	74	96	N/A	INTRINSIC
low complexity region	126	142	N/A	INTRINSIC
transmembrane domain	144	166	N/A	INTRINSIC
transmembrane domain	203	222	N/A	INTRINSIC
transmembrane domain	232	249	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SLC25A34 belongs to the SLC25 family of mitochondrial carrier proteins (Haitina et al., 2006 [PubMed 16949250]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 39 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acyp2	C	T	11: 30,456,354 (GRCm39)	E98K	possibly damaging	Het
Adgrl3	A	G	5: 81,836,410 (GRCm39)	R723G	probably damaging	Het
Ankrd52	C	A	10: 128,222,881 (GRCm39)	N610K	probably benign	Het
Atp2a3	A	G	11: 72,879,287 (GRCm39)		probably null	Het
Bahcc1	G	A	11: 120,163,714 (GRCm39)	A671T	probably benign	Het
Col6a5	A	T	9: 105,769,471 (GRCm39)	Y1764*	probably null	Het
E2f8	A	G	7: 48,517,424 (GRCm39)	V793A	probably benign	Het
Erbin	A	G	13: 103,970,400 (GRCm39)	I1072T	probably benign	Het
Exoc2	T	C	13: 31,060,780 (GRCm39)	I575V	probably benign	Het
Fbxw19	C	T	9: 109,324,834 (GRCm39)	V28M	probably damaging	Het
Flt1	G	A	5: 147,540,403 (GRCm39)	T762M	probably benign	Het
Ghitm	C	A	14: 36,847,166 (GRCm39)	A303S	probably damaging	Het
Gm18856	T	A	13: 14,140,319 (GRCm39)		probably benign	Het
Gm5493	T	A	17: 22,967,069 (GRCm39)	H68Q	possibly damaging	Het
Hells	T	G	19: 38,942,093 (GRCm39)	I461S	probably benign	Het
Inpp4a	T	A	1: 37,416,829 (GRCm39)	I450N	probably damaging	Het
Kbtbd6	T	A	14: 79,690,553 (GRCm39)	V353D	probably damaging	Het
Kifap3	A	T	1: 163,696,338 (GRCm39)	T656S	possibly damaging	Het
Med23	A	T	10: 24,781,932 (GRCm39)	K713*	probably null	Het
Miga1	A	T	3: 152,041,036 (GRCm39)	F44I	probably benign	Het
Ngrn	A	G	7: 79,911,625 (GRCm39)	E74G	probably damaging	Het
Or4k40	T	C	2: 111,251,000 (GRCm39)	S99G	probably benign	Het
Patl2	A	T	2: 121,957,967 (GRCm39)	L97Q	probably damaging	Het
Pcdha1	A	G	18: 37,065,354 (GRCm39)	I673V	probably benign	Het
Pcsk1	A	G	13: 75,275,967 (GRCm39)	T543A	probably benign	Het
Plch1	C	T	3: 63,609,444 (GRCm39)	R912H	probably damaging	Het
Prl8a8	A	G	13: 27,695,447 (GRCm39)	V100A	possibly damaging	Het
Rnase10	T	A	14: 51,246,751 (GRCm39)	V43E	possibly damaging	Het
Robo1	A	G	16: 72,780,717 (GRCm39)	S816G	probably benign	Het
Slc25a48	A	T	13: 56,612,891 (GRCm39)	E263V	probably damaging	Het
Slc7a14	A	G	3: 31,311,759 (GRCm39)	V87A	probably damaging	Het
Slc8b1	A	G	5: 120,667,665 (GRCm39)	I433V	probably damaging	Het
Smurf1	A	G	5: 144,831,314 (GRCm39)	V259A	possibly damaging	Het
Spag6l	T	A	16: 16,599,652 (GRCm39)	N270I	possibly damaging	Het
Tas2r113	G	A	6: 132,869,977 (GRCm39)	V2M	probably damaging	Het
Tnpo2	T	C	8: 85,780,104 (GRCm39)	V680A	probably damaging	Het
Ttyh3	A	C	5: 140,619,317 (GRCm39)		probably null	Het
Ufl1	A	G	4: 25,251,999 (GRCm39)	S639P	possibly damaging	Het
Znfx1	A	T	2: 166,879,001 (GRCm39)	F928I	possibly damaging	Het

Other mutations in Slc25a34

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01311:Slc25a34	APN	4	141,348,747 (GRCm39)	missense	possibly damaging	0.84
IGL01578:Slc25a34	APN	4	141,349,821 (GRCm39)	splice site	probably null
IGL01694:Slc25a34	APN	4	141,349,564 (GRCm39)	missense	probably benign	0.03
IGL02421:Slc25a34	APN	4	141,348,753 (GRCm39)	missense	probably benign	0.00
R0139:Slc25a34	UTSW	4	141,349,663 (GRCm39)	missense	possibly damaging	0.51
R0415:Slc25a34	UTSW	4	141,347,780 (GRCm39)	missense	possibly damaging	0.48
R1851:Slc25a34	UTSW	4	141,349,579 (GRCm39)	missense	probably benign	0.06
R1852:Slc25a34	UTSW	4	141,349,579 (GRCm39)	missense	probably benign	0.06
R4776:Slc25a34	UTSW	4	141,350,899 (GRCm39)	missense	possibly damaging	0.83
R5112:Slc25a34	UTSW	4	141,348,769 (GRCm39)	missense	probably benign	0.01
R5426:Slc25a34	UTSW	4	141,350,877 (GRCm39)	missense	probably damaging	0.96
R5807:Slc25a34	UTSW	4	141,350,973 (GRCm39)	missense	probably benign
R6977:Slc25a34	UTSW	4	141,347,809 (GRCm39)	missense	probably damaging	1.00
R8191:Slc25a34	UTSW	4	141,347,895 (GRCm39)	missense	probably damaging	1.00
R9214:Slc25a34	UTSW	4	141,350,641 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AAGACACTTACCAGGTAAGCAG -3'
(R):5'- CCATGGATTCGAGGGAGATG -3'

Sequencing Primer
(F):5'- TTACCAGGTAAGCAGGACTCC -3'
(R):5'- ATTCGAGGGAGATGGTGTCC -3'

Posted On

2017-08-16