Mutagenetix > Incidental Mutation

Incidental Mutation 'R6107:Gm18856'

485567

Institutional Source

Beutler Lab

Gene Symbol

Gm18856

Ensembl Gene

ENSMUSG00000096192

Gene Name

predicted gene, 18856

Synonyms

MMRRC Submission

044257-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R6107 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

14139060-14140445 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 14140319 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000152457 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000099747] [ENSMUST00000221300] [ENSMUST00000221974] [ENSMUST00000222110] [ENSMUST00000223483]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000099747

SMART Domains

Protein: ENSMUSP00000097336
Gene: ENSMUSG00000039242

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
Pfam:Galactosyl_T	300	460	2.9e-26	PFAM
low complexity region	481	492	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000178096

SMART Domains

Protein: ENSMUSP00000136490
Gene: ENSMUSG00000096192

Domain	Start	End	E-Value	Type
BTB	34	145	1.76e-25	SMART
low complexity region	168	176	N/A	INTRINSIC
low complexity region	184	200	N/A	INTRINSIC
low complexity region	241	253	N/A	INTRINSIC
ZnF_C2H2	309	328	5.12e1	SMART
ZnF_C2H2	334	356	7.26e-3	SMART
ZnF_C2H2	362	382	1.26e1	SMART
ZnF_C2H2	390	410	2.41e1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221021

Predicted Effect

probably benign
Transcript: ENSMUST00000221300

Predicted Effect

probably benign
Transcript: ENSMUST00000221333

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000221764

Predicted Effect

probably benign
Transcript: ENSMUST00000221974

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223389

Predicted Effect

probably benign
Transcript: ENSMUST00000222110

Predicted Effect

probably benign
Transcript: ENSMUST00000223483

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223307

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222015

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 39 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acyp2	C	T	11: 30,456,354 (GRCm39)	E98K	possibly damaging	Het
Adgrl3	A	G	5: 81,836,410 (GRCm39)	R723G	probably damaging	Het
Ankrd52	C	A	10: 128,222,881 (GRCm39)	N610K	probably benign	Het
Atp2a3	A	G	11: 72,879,287 (GRCm39)		probably null	Het
Bahcc1	G	A	11: 120,163,714 (GRCm39)	A671T	probably benign	Het
Col6a5	A	T	9: 105,769,471 (GRCm39)	Y1764*	probably null	Het
E2f8	A	G	7: 48,517,424 (GRCm39)	V793A	probably benign	Het
Erbin	A	G	13: 103,970,400 (GRCm39)	I1072T	probably benign	Het
Exoc2	T	C	13: 31,060,780 (GRCm39)	I575V	probably benign	Het
Fbxw19	C	T	9: 109,324,834 (GRCm39)	V28M	probably damaging	Het
Flt1	G	A	5: 147,540,403 (GRCm39)	T762M	probably benign	Het
Ghitm	C	A	14: 36,847,166 (GRCm39)	A303S	probably damaging	Het
Gm5493	T	A	17: 22,967,069 (GRCm39)	H68Q	possibly damaging	Het
Hells	T	G	19: 38,942,093 (GRCm39)	I461S	probably benign	Het
Inpp4a	T	A	1: 37,416,829 (GRCm39)	I450N	probably damaging	Het
Kbtbd6	T	A	14: 79,690,553 (GRCm39)	V353D	probably damaging	Het
Kifap3	A	T	1: 163,696,338 (GRCm39)	T656S	possibly damaging	Het
Med23	A	T	10: 24,781,932 (GRCm39)	K713*	probably null	Het
Miga1	A	T	3: 152,041,036 (GRCm39)	F44I	probably benign	Het
Ngrn	A	G	7: 79,911,625 (GRCm39)	E74G	probably damaging	Het
Or4k40	T	C	2: 111,251,000 (GRCm39)	S99G	probably benign	Het
Patl2	A	T	2: 121,957,967 (GRCm39)	L97Q	probably damaging	Het
Pcdha1	A	G	18: 37,065,354 (GRCm39)	I673V	probably benign	Het
Pcsk1	A	G	13: 75,275,967 (GRCm39)	T543A	probably benign	Het
Plch1	C	T	3: 63,609,444 (GRCm39)	R912H	probably damaging	Het
Prl8a8	A	G	13: 27,695,447 (GRCm39)	V100A	possibly damaging	Het
Rnase10	T	A	14: 51,246,751 (GRCm39)	V43E	possibly damaging	Het
Robo1	A	G	16: 72,780,717 (GRCm39)	S816G	probably benign	Het
Slc25a34	C	T	4: 141,350,806 (GRCm39)	V68M	probably benign	Het
Slc25a48	A	T	13: 56,612,891 (GRCm39)	E263V	probably damaging	Het
Slc7a14	A	G	3: 31,311,759 (GRCm39)	V87A	probably damaging	Het
Slc8b1	A	G	5: 120,667,665 (GRCm39)	I433V	probably damaging	Het
Smurf1	A	G	5: 144,831,314 (GRCm39)	V259A	possibly damaging	Het
Spag6l	T	A	16: 16,599,652 (GRCm39)	N270I	possibly damaging	Het
Tas2r113	G	A	6: 132,869,977 (GRCm39)	V2M	probably damaging	Het
Tnpo2	T	C	8: 85,780,104 (GRCm39)	V680A	probably damaging	Het
Ttyh3	A	C	5: 140,619,317 (GRCm39)		probably null	Het
Ufl1	A	G	4: 25,251,999 (GRCm39)	S639P	possibly damaging	Het
Znfx1	A	T	2: 166,879,001 (GRCm39)	F928I	possibly damaging	Het

Other mutations in Gm18856

Allele	Source	Chr	Coord	Type	Predicted Effect
IGL00500:Gm18856	APN	13	14,140,319 (GRCm39)	intron	probably benign
IGL01865:Gm18856	APN	13	14,139,508 (GRCm39)	intron	probably benign
IGL01986:Gm18856	APN	13	14,139,413 (GRCm39)	intron	probably benign
IGL02552:Gm18856	APN	13	14,139,805 (GRCm39)	intron	probably benign
IGL02664:Gm18856	APN	13	14,139,809 (GRCm39)	intron	probably benign
R1538:Gm18856	UTSW	13	14,139,274 (GRCm39)	intron	probably benign
R1672:Gm18856	UTSW	13	14,140,342 (GRCm39)	intron	probably benign
R2029:Gm18856	UTSW	13	14,139,376 (GRCm39)	intron	probably benign
R3971:Gm18856	UTSW	13	14,139,433 (GRCm39)	intron	probably benign
R4655:Gm18856	UTSW	13	14,140,232 (GRCm39)	intron	probably benign
R4795:Gm18856	UTSW	13	14,139,793 (GRCm39)	intron	probably benign

Predicted Primers

PCR Primer
(F):5'- CCGGTATATTGGCGATGCTG -3'
(R):5'- GACGCGCTTCTTCTAACACC -3'

Sequencing Primer
(F):5'- CTGTGTAAGCAAACTCGAGC -3'
(R):5'- AACACCCTGTGCCTCTGC -3'

Posted On

2017-08-16