Incidental Mutation 'R6124:Vmn1r19'
ID |
485868 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r19
|
Ensembl Gene |
ENSMUSG00000115799 |
Gene Name |
vomeronasal 1 receptor 19 |
Synonyms |
V1rc27 |
MMRRC Submission |
044271-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.094)
|
Stock # |
R6124 (G1)
|
Quality Score |
225.009 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
57381449-57382375 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to C
at 57381602 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Methionine to Leucine
at position 52
(M52L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000087264
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089830]
|
AlphaFold |
Q8R2C7 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000089830
AA Change: M52L
PolyPhen 2
Score 0.023 (Sensitivity: 0.95; Specificity: 0.81)
|
SMART Domains |
Protein: ENSMUSP00000087264 Gene: ENSMUSG00000115799 AA Change: M52L
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
6.6e-58 |
PFAM |
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.0%
- 20x: 94.4%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 43 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2900026A02Rik |
T |
C |
5: 113,331,622 (GRCm39) |
N864S |
probably benign |
Het |
Ank2 |
C |
T |
3: 127,041,800 (GRCm39) |
V35M |
probably benign |
Het |
Apc2 |
T |
C |
10: 80,142,185 (GRCm39) |
M368T |
probably damaging |
Het |
Atp8b3 |
G |
A |
10: 80,365,515 (GRCm39) |
T413M |
probably damaging |
Het |
Cxcr4 |
A |
G |
1: 128,517,397 (GRCm39) |
L86P |
probably damaging |
Het |
Cyfip1 |
A |
G |
7: 55,547,691 (GRCm39) |
Y598C |
probably benign |
Het |
Epg5 |
A |
G |
18: 78,073,260 (GRCm39) |
N2428D |
probably benign |
Het |
Fastkd3 |
C |
T |
13: 68,738,337 (GRCm39) |
Q32* |
probably null |
Het |
Fkbpl |
G |
A |
17: 34,864,303 (GRCm39) |
A24T |
probably benign |
Het |
Gm5422 |
A |
G |
10: 31,125,396 (GRCm39) |
|
noncoding transcript |
Het |
Gm9913 |
T |
A |
2: 125,348,393 (GRCm39) |
|
probably benign |
Het |
Hgfac |
A |
G |
5: 35,201,728 (GRCm39) |
N287S |
probably benign |
Het |
Hook3 |
A |
T |
8: 26,549,300 (GRCm39) |
N181K |
probably benign |
Het |
Hormad1 |
A |
G |
3: 95,483,613 (GRCm39) |
T142A |
probably benign |
Het |
Klrh1 |
A |
T |
6: 129,745,098 (GRCm39) |
F166Y |
probably benign |
Het |
Kplce |
G |
T |
3: 92,776,365 (GRCm39) |
P106Q |
probably damaging |
Het |
Lonrf1 |
T |
A |
8: 36,696,354 (GRCm39) |
N565I |
probably damaging |
Het |
Mast1 |
A |
G |
8: 85,651,936 (GRCm39) |
S349P |
probably benign |
Het |
Mcee |
T |
A |
7: 64,050,023 (GRCm39) |
N51K |
probably damaging |
Het |
Mfsd6 |
A |
C |
1: 52,747,411 (GRCm39) |
F485V |
probably damaging |
Het |
Mptx2 |
G |
A |
1: 173,102,414 (GRCm39) |
L92F |
probably benign |
Het |
Nlrp6 |
T |
A |
7: 140,503,160 (GRCm39) |
V422E |
probably damaging |
Het |
Nrap |
A |
G |
19: 56,374,458 (GRCm39) |
S23P |
probably damaging |
Het |
Nsd2 |
T |
A |
5: 34,000,610 (GRCm39) |
H42Q |
probably benign |
Het |
Obscn |
A |
T |
11: 58,969,870 (GRCm39) |
S91T |
probably benign |
Het |
Or10ak13 |
C |
A |
4: 118,639,392 (GRCm39) |
C130F |
probably damaging |
Het |
Or10j2 |
T |
A |
1: 173,097,846 (GRCm39) |
Y35N |
probably damaging |
Het |
Or13a20 |
A |
T |
7: 140,232,507 (GRCm39) |
D205V |
probably damaging |
Het |
Or5p72 |
A |
T |
7: 108,022,725 (GRCm39) |
|
probably null |
Het |
Or6c215 |
G |
A |
10: 129,637,689 (GRCm39) |
A235V |
probably damaging |
Het |
Or6c215 |
C |
A |
10: 129,637,690 (GRCm39) |
A235S |
probably damaging |
Het |
Or6d15 |
T |
C |
6: 116,559,446 (GRCm39) |
I154V |
probably benign |
Het |
Papss2 |
T |
A |
19: 32,614,528 (GRCm39) |
N81K |
probably damaging |
Het |
Plekhn1 |
A |
G |
4: 156,309,696 (GRCm39) |
I147T |
possibly damaging |
Het |
Ptgfrn |
C |
T |
3: 100,980,405 (GRCm39) |
E312K |
probably damaging |
Het |
Serpinb1b |
T |
C |
13: 33,277,796 (GRCm39) |
V343A |
probably benign |
Het |
Sis |
T |
C |
3: 72,860,544 (GRCm39) |
N261S |
possibly damaging |
Het |
Slc41a2 |
T |
C |
10: 83,133,116 (GRCm39) |
N310S |
probably damaging |
Het |
Slco3a1 |
C |
T |
7: 73,968,254 (GRCm39) |
D489N |
probably benign |
Het |
Snrnp48 |
T |
A |
13: 38,400,439 (GRCm39) |
I182N |
possibly damaging |
Het |
Tppp2 |
A |
T |
14: 52,156,937 (GRCm39) |
T105S |
probably benign |
Het |
Vav3 |
C |
T |
3: 109,571,681 (GRCm39) |
T201M |
probably damaging |
Het |
Vmn2r94 |
T |
A |
17: 18,464,321 (GRCm39) |
R656S |
probably benign |
Het |
|
Other mutations in Vmn1r19 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00948:Vmn1r19
|
APN |
6 |
57,382,247 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01287:Vmn1r19
|
APN |
6 |
57,382,179 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01516:Vmn1r19
|
APN |
6 |
57,381,857 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01895:Vmn1r19
|
APN |
6 |
57,382,245 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02676:Vmn1r19
|
APN |
6 |
57,382,025 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL03040:Vmn1r19
|
APN |
6 |
57,382,347 (GRCm39) |
missense |
unknown |
|
IGL03087:Vmn1r19
|
APN |
6 |
57,381,476 (GRCm39) |
missense |
probably benign |
0.01 |
PIT4802001:Vmn1r19
|
UTSW |
6 |
57,382,037 (GRCm39) |
missense |
probably damaging |
1.00 |
R0319:Vmn1r19
|
UTSW |
6 |
57,381,600 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1368:Vmn1r19
|
UTSW |
6 |
57,381,656 (GRCm39) |
missense |
probably benign |
0.01 |
R1997:Vmn1r19
|
UTSW |
6 |
57,382,033 (GRCm39) |
missense |
probably damaging |
1.00 |
R2920:Vmn1r19
|
UTSW |
6 |
57,381,909 (GRCm39) |
missense |
probably benign |
0.03 |
R3857:Vmn1r19
|
UTSW |
6 |
57,382,098 (GRCm39) |
missense |
possibly damaging |
0.68 |
R4090:Vmn1r19
|
UTSW |
6 |
57,381,720 (GRCm39) |
missense |
probably damaging |
1.00 |
R4547:Vmn1r19
|
UTSW |
6 |
57,381,774 (GRCm39) |
missense |
possibly damaging |
0.56 |
R4823:Vmn1r19
|
UTSW |
6 |
57,382,219 (GRCm39) |
nonsense |
probably null |
|
R4951:Vmn1r19
|
UTSW |
6 |
57,381,927 (GRCm39) |
missense |
probably benign |
0.36 |
R5077:Vmn1r19
|
UTSW |
6 |
57,382,026 (GRCm39) |
missense |
probably benign |
0.00 |
R5459:Vmn1r19
|
UTSW |
6 |
57,381,475 (GRCm39) |
nonsense |
probably null |
|
R5625:Vmn1r19
|
UTSW |
6 |
57,382,281 (GRCm39) |
missense |
probably damaging |
1.00 |
R5690:Vmn1r19
|
UTSW |
6 |
57,381,780 (GRCm39) |
missense |
probably benign |
0.10 |
R5761:Vmn1r19
|
UTSW |
6 |
57,382,338 (GRCm39) |
missense |
unknown |
|
R6373:Vmn1r19
|
UTSW |
6 |
57,382,317 (GRCm39) |
missense |
unknown |
|
R6476:Vmn1r19
|
UTSW |
6 |
57,381,578 (GRCm39) |
missense |
probably damaging |
0.99 |
R6938:Vmn1r19
|
UTSW |
6 |
57,381,992 (GRCm39) |
missense |
possibly damaging |
0.94 |
R7027:Vmn1r19
|
UTSW |
6 |
57,381,475 (GRCm39) |
nonsense |
probably null |
|
R7359:Vmn1r19
|
UTSW |
6 |
57,382,080 (GRCm39) |
missense |
probably damaging |
0.99 |
R7568:Vmn1r19
|
UTSW |
6 |
57,381,813 (GRCm39) |
missense |
possibly damaging |
0.69 |
R7893:Vmn1r19
|
UTSW |
6 |
57,381,664 (GRCm39) |
missense |
probably damaging |
1.00 |
R8481:Vmn1r19
|
UTSW |
6 |
57,381,932 (GRCm39) |
missense |
probably damaging |
0.99 |
R8487:Vmn1r19
|
UTSW |
6 |
57,382,166 (GRCm39) |
missense |
probably benign |
0.03 |
R8812:Vmn1r19
|
UTSW |
6 |
57,381,436 (GRCm39) |
start gained |
probably benign |
|
R8907:Vmn1r19
|
UTSW |
6 |
57,381,991 (GRCm39) |
missense |
probably benign |
|
R8976:Vmn1r19
|
UTSW |
6 |
57,381,719 (GRCm39) |
missense |
probably benign |
0.01 |
R9277:Vmn1r19
|
UTSW |
6 |
57,382,322 (GRCm39) |
missense |
unknown |
|
|
Predicted Primers |
PCR Primer
(F):5'- CACTGTCCAATGAATCACACATTTC -3'
(R):5'- CTGGGACTGATTGTGATAGCC -3'
Sequencing Primer
(F):5'- ACTACAGTTCTACTATGGTCTTAGGG -3'
(R):5'- GTGATAGCCTGGGATACACTC -3'
|
Posted On |
2017-08-16 |