Incidental Mutation 'R6124:Gm5422'
ID 485880
Institutional Source Beutler Lab
Gene Symbol Gm5422
Ensembl Gene ENSMUSG00000039684
Gene Name predicted pseudogene 5422
Synonyms
MMRRC Submission 044271-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.915) question?
Stock # R6124 (G1)
Quality Score 225.009
Status Not validated
Chromosome 10
Chromosomal Location 31124133-31127039 bp(+) (GRCm39)
Type of Mutation exon
DNA Base Change (assembly) A to G at 31125396 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s):
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000050717
SMART Domains Protein: ENSMUSP00000135967
Gene: ENSMUSG00000039684

DomainStartEndE-ValueType
low complexity region 44 61 N/A INTRINSIC
Pfam:PC_rep 438 474 6.8e-9 PFAM
Pfam:PC_rep 475 509 1.1e-8 PFAM
SCOP:d1gw5a_ 603 760 4e-4 SMART
PDB:4CR4|Z 648 901 1e-50 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000216161
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.0%
  • 20x: 94.4%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2900026A02Rik T C 5: 113,331,622 (GRCm39) N864S probably benign Het
Ank2 C T 3: 127,041,800 (GRCm39) V35M probably benign Het
Apc2 T C 10: 80,142,185 (GRCm39) M368T probably damaging Het
Atp8b3 G A 10: 80,365,515 (GRCm39) T413M probably damaging Het
Cxcr4 A G 1: 128,517,397 (GRCm39) L86P probably damaging Het
Cyfip1 A G 7: 55,547,691 (GRCm39) Y598C probably benign Het
Epg5 A G 18: 78,073,260 (GRCm39) N2428D probably benign Het
Fastkd3 C T 13: 68,738,337 (GRCm39) Q32* probably null Het
Fkbpl G A 17: 34,864,303 (GRCm39) A24T probably benign Het
Gm9913 T A 2: 125,348,393 (GRCm39) probably benign Het
Hgfac A G 5: 35,201,728 (GRCm39) N287S probably benign Het
Hook3 A T 8: 26,549,300 (GRCm39) N181K probably benign Het
Hormad1 A G 3: 95,483,613 (GRCm39) T142A probably benign Het
Klrh1 A T 6: 129,745,098 (GRCm39) F166Y probably benign Het
Kplce G T 3: 92,776,365 (GRCm39) P106Q probably damaging Het
Lonrf1 T A 8: 36,696,354 (GRCm39) N565I probably damaging Het
Mast1 A G 8: 85,651,936 (GRCm39) S349P probably benign Het
Mcee T A 7: 64,050,023 (GRCm39) N51K probably damaging Het
Mfsd6 A C 1: 52,747,411 (GRCm39) F485V probably damaging Het
Mptx2 G A 1: 173,102,414 (GRCm39) L92F probably benign Het
Nlrp6 T A 7: 140,503,160 (GRCm39) V422E probably damaging Het
Nrap A G 19: 56,374,458 (GRCm39) S23P probably damaging Het
Nsd2 T A 5: 34,000,610 (GRCm39) H42Q probably benign Het
Obscn A T 11: 58,969,870 (GRCm39) S91T probably benign Het
Or10ak13 C A 4: 118,639,392 (GRCm39) C130F probably damaging Het
Or10j2 T A 1: 173,097,846 (GRCm39) Y35N probably damaging Het
Or13a20 A T 7: 140,232,507 (GRCm39) D205V probably damaging Het
Or5p72 A T 7: 108,022,725 (GRCm39) probably null Het
Or6c215 G A 10: 129,637,689 (GRCm39) A235V probably damaging Het
Or6c215 C A 10: 129,637,690 (GRCm39) A235S probably damaging Het
Or6d15 T C 6: 116,559,446 (GRCm39) I154V probably benign Het
Papss2 T A 19: 32,614,528 (GRCm39) N81K probably damaging Het
Plekhn1 A G 4: 156,309,696 (GRCm39) I147T possibly damaging Het
Ptgfrn C T 3: 100,980,405 (GRCm39) E312K probably damaging Het
Serpinb1b T C 13: 33,277,796 (GRCm39) V343A probably benign Het
Sis T C 3: 72,860,544 (GRCm39) N261S possibly damaging Het
Slc41a2 T C 10: 83,133,116 (GRCm39) N310S probably damaging Het
Slco3a1 C T 7: 73,968,254 (GRCm39) D489N probably benign Het
Snrnp48 T A 13: 38,400,439 (GRCm39) I182N possibly damaging Het
Tppp2 A T 14: 52,156,937 (GRCm39) T105S probably benign Het
Vav3 C T 3: 109,571,681 (GRCm39) T201M probably damaging Het
Vmn1r19 A C 6: 57,381,602 (GRCm39) M52L probably benign Het
Vmn2r94 T A 17: 18,464,321 (GRCm39) R656S probably benign Het
Other mutations in Gm5422
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01306:Gm5422 APN 10 31,125,432 (GRCm39) exon noncoding transcript
IGL01569:Gm5422 APN 10 31,125,897 (GRCm39) exon noncoding transcript
IGL01645:Gm5422 APN 10 31,126,069 (GRCm39) exon noncoding transcript
IGL02273:Gm5422 APN 10 31,126,003 (GRCm39) exon noncoding transcript
IGL02603:Gm5422 APN 10 31,125,436 (GRCm39) exon noncoding transcript
IGL02928:Gm5422 APN 10 31,126,250 (GRCm39) exon noncoding transcript
IGL03003:Gm5422 APN 10 31,126,840 (GRCm39) exon noncoding transcript
IGL03274:Gm5422 APN 10 31,126,348 (GRCm39) exon noncoding transcript
IGL03297:Gm5422 APN 10 31,125,727 (GRCm39) exon noncoding transcript
ANU23:Gm5422 UTSW 10 31,125,432 (GRCm39) exon noncoding transcript
R0010:Gm5422 UTSW 10 31,125,750 (GRCm39) exon noncoding transcript
R0506:Gm5422 UTSW 10 31,126,318 (GRCm39) exon noncoding transcript
R0560:Gm5422 UTSW 10 31,125,240 (GRCm39) exon noncoding transcript
R0573:Gm5422 UTSW 10 31,126,156 (GRCm39) exon noncoding transcript
R0652:Gm5422 UTSW 10 31,125,277 (GRCm39) exon noncoding transcript
R1210:Gm5422 UTSW 10 31,126,719 (GRCm39) intron noncoding transcript
R1259:Gm5422 UTSW 10 31,125,111 (GRCm39) exon noncoding transcript
R1352:Gm5422 UTSW 10 31,126,731 (GRCm39) intron noncoding transcript
R1631:Gm5422 UTSW 10 31,125,802 (GRCm39) exon noncoding transcript
R1707:Gm5422 UTSW 10 31,124,458 (GRCm39) exon noncoding transcript
R1893:Gm5422 UTSW 10 31,125,609 (GRCm39) exon noncoding transcript
R2011:Gm5422 UTSW 10 31,124,764 (GRCm39) exon noncoding transcript
R2132:Gm5422 UTSW 10 31,124,929 (GRCm39) exon noncoding transcript
R3427:Gm5422 UTSW 10 31,124,842 (GRCm39) exon noncoding transcript
R3772:Gm5422 UTSW 10 31,124,510 (GRCm39) exon noncoding transcript
R4703:Gm5422 UTSW 10 31,125,608 (GRCm39) exon noncoding transcript
R5539:Gm5422 UTSW 10 31,124,646 (GRCm39) exon noncoding transcript
R5603:Gm5422 UTSW 10 31,126,840 (GRCm39) exon noncoding transcript
R5660:Gm5422 UTSW 10 31,126,048 (GRCm39) exon noncoding transcript
R6178:Gm5422 UTSW 10 31,125,688 (GRCm39) exon noncoding transcript
R8263:Gm5422 UTSW 10 31,125,099 (GRCm39) missense noncoding transcript
Predicted Primers PCR Primer
(F):5'- AGTGGCTCTCAAGTGGATTCTG -3'
(R):5'- CCCGATTAGAGCCAGCATAG -3'

Sequencing Primer
(F):5'- CTCTCAAGTGGATTCTGCACGAATG -3'
(R):5'- AGCCAAGTCTCATGGTATTGC -3'
Posted On 2017-08-16