Mutagenetix > Incidental Mutation

Incidental Mutation 'R6038:Lrp12'

486707

Institutional Source

Beutler Lab

Gene Symbol

Lrp12

Ensembl Gene

ENSMUSG00000022305

Gene Name

low density lipoprotein-related protein 12

Synonyms

C820005L12Rik

MMRRC Submission

044208-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.124) question?

Stock #

R6038 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

39733985-39807390 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 39735776 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Glycine at position 738 (W738G)

Ref Sequence

ENSEMBL: ENSMUSP00000022916 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022916] [ENSMUST00000110305]

AlphaFold

Q8BUJ9

Predicted Effect

probably damaging
Transcript: ENSMUST00000022916
AA Change: W738G

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000022916
Gene: ENSMUSG00000022305
AA Change: W738G

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
CUB	47	159	3.23e-28	SMART
LDLa	167	202	1.27e-11	SMART
LDLa	214	256	1.04e-7	SMART
CUB	259	372	9.88e-24	SMART
LDLa	374	412	2.6e-3	SMART
LDLa	413	450	2.36e-6	SMART
LDLa	451	487	5.1e-11	SMART
low complexity region	630	646	N/A	INTRINSIC
low complexity region	653	664	N/A	INTRINSIC
low complexity region	708	722	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110305
AA Change: W719G

PolyPhen 2 Score 0.931 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000105934
Gene: ENSMUSG00000022305
AA Change: W719G

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
CUB	28	140	3.23e-28	SMART
LDLa	148	183	1.27e-11	SMART
LDLa	195	237	1.04e-7	SMART
CUB	240	353	9.88e-24	SMART
LDLa	355	393	2.6e-3	SMART
LDLa	394	431	2.36e-6	SMART
LDLa	432	468	5.1e-11	SMART
low complexity region	611	627	N/A	INTRINSIC
low complexity region	634	645	N/A	INTRINSIC
low complexity region	689	703	N/A	INTRINSIC

Meta Mutation Damage Score

0.1323

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.4%
20x: 95.7%

Validation Efficiency

100% (65/65)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the low-density lipoprotein receptor related protein family. The product of this gene is a transmembrane protein that is differentially expressed in many cancer cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc10	A	G	17: 46,615,286 (GRCm39)	C1327R	probably damaging	Het
Adcy7	A	G	8: 89,049,608 (GRCm39)	T704A	probably benign	Het
Adgra3	A	T	5: 50,156,487 (GRCm39)	Y414*	probably null	Het
Adgrf1	T	C	17: 43,606,100 (GRCm39)	S75P	probably benign	Het
Akirin1	A	G	4: 123,643,956 (GRCm39)	M1T	probably null	Het
Antxr1	C	A	6: 87,263,982 (GRCm39)		probably null	Het
Arid1b	A	T	17: 5,386,957 (GRCm39)	Y1470F	probably benign	Het
Baiap3	T	C	17: 25,465,308 (GRCm39)	D649G	probably damaging	Het
Cabin1	A	G	10: 75,575,200 (GRCm39)	V615A	probably benign	Het
Cntnap1	G	A	11: 101,075,462 (GRCm39)	R880Q	probably benign	Het
Col28a1	T	C	6: 8,013,140 (GRCm39)	T971A	probably benign	Het
Coro7	A	T	16: 4,497,414 (GRCm39)		probably null	Het
Cspg4b	G	A	13: 113,455,153 (GRCm39)	V400M	possibly damaging	Het
Defb19	T	G	2: 152,418,187 (GRCm39)		probably null	Het
Dnah17	T	C	11: 117,946,715 (GRCm39)	D3045G	probably benign	Het
Dock4	A	T	12: 40,783,350 (GRCm39)		probably null	Het
Egln3	A	G	12: 54,228,476 (GRCm39)	V210A	probably damaging	Het
Epb41l4a	T	C	18: 33,987,388 (GRCm39)	S330G	probably benign	Het
Epha7	G	A	4: 28,821,521 (GRCm39)	E229K	probably damaging	Het
Fetub	C	T	16: 22,751,081 (GRCm39)	R143C	probably damaging	Het
Garin4	C	T	1: 190,894,919 (GRCm39)	E575K	probably damaging	Het
Garin5a	C	T	7: 44,149,719 (GRCm39)	R147W	probably damaging	Het
Garin5b	T	C	7: 4,756,594 (GRCm39)		probably null	Het
Gm29587	G	A	12: 74,269,309 (GRCm39)		probably null	Het
Gxylt2	T	A	6: 100,781,555 (GRCm39)	L410Q	probably damaging	Het
H2-M10.3	C	A	17: 36,679,287 (GRCm39)	C6F	probably benign	Het
Hecw1	G	T	13: 14,520,647 (GRCm39)	Q197K	probably benign	Het
Hk3	T	C	13: 55,154,373 (GRCm39)	M778V	probably benign	Het
Hydin	A	G	8: 111,325,663 (GRCm39)	T4691A	probably benign	Het
Larp1	A	G	11: 57,932,431 (GRCm39)	E204G	possibly damaging	Het
Mdga2	A	T	12: 66,676,827 (GRCm39)	D488E	probably damaging	Het
Mrc1	G	C	2: 14,261,882 (GRCm39)	W290C	probably damaging	Het
Mtrex	A	T	13: 113,027,824 (GRCm39)	S679T	probably benign	Het
Nhp2	T	C	11: 51,510,912 (GRCm39)	V55A	probably benign	Het
Nrm	T	C	17: 36,172,397 (GRCm39)	S41P	possibly damaging	Het
Or10ag54	T	A	2: 87,099,611 (GRCm39)	I141N	possibly damaging	Het
Or11g25	T	C	14: 50,723,677 (GRCm39)	L254P	probably damaging	Het
Or7e165	A	G	9: 19,694,858 (GRCm39)	Y143C	probably benign	Het
Osbpl7	C	T	11: 96,941,542 (GRCm39)	P22S	probably benign	Het
Pebp1	A	T	5: 117,422,170 (GRCm39)	L124Q	probably benign	Het
Pfkp	G	T	13: 6,648,005 (GRCm39)	H524N	probably benign	Het
Pnmt	G	A	11: 98,278,594 (GRCm39)	D187N	probably damaging	Het
Ppl	A	T	16: 4,920,445 (GRCm39)	I355K	possibly damaging	Het
Prom1	A	T	5: 44,159,135 (GRCm39)	Y836N	probably damaging	Het
Rubcnl	T	C	14: 75,269,410 (GRCm39)	S23P	probably benign	Het
Sap130	T	A	18: 31,813,539 (GRCm39)	I532N	probably damaging	Het
Serpina1e	A	T	12: 103,913,095 (GRCm39)		probably null	Het
Slc12a3	T	G	8: 95,057,100 (GRCm39)	S124R	probably benign	Het
Slc24a5	A	G	2: 124,927,651 (GRCm39)	T317A	probably benign	Het
Smarcad1	T	C	6: 65,050,232 (GRCm39)	S284P	possibly damaging	Het
Spag9	C	G	11: 94,002,918 (GRCm39)	R724G	probably damaging	Het
Speg	T	C	1: 75,395,103 (GRCm39)		probably null	Het
Steap3	A	G	1: 120,169,371 (GRCm39)	Y271H	probably damaging	Het
Syne2	C	T	12: 75,925,158 (GRCm39)	Q44*	probably null	Het
Tas2r114	A	T	6: 131,666,444 (GRCm39)	C195S	possibly damaging	Het
Tcl1b4	T	C	12: 105,168,766 (GRCm39)	M10T	possibly damaging	Het
Tln1	G	C	4: 43,555,052 (GRCm39)	F259L	probably damaging	Het
Vmn2r60	C	A	7: 41,844,386 (GRCm39)	A583D	probably benign	Het
Wdhd1	T	C	14: 47,501,037 (GRCm39)	Q455R	possibly damaging	Het
Wdr17	A	G	8: 55,085,346 (GRCm39)		probably null	Het
Xbp1	T	C	11: 5,474,798 (GRCm39)	L233P	probably benign	Het
Zbtb17	A	G	4: 141,191,752 (GRCm39)	E288G	probably benign	Het

Other mutations in Lrp12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01953:Lrp12	APN	15	39,741,497 (GRCm39)	missense	probably damaging	1.00
IGL02501:Lrp12	APN	15	39,741,300 (GRCm39)	missense	probably damaging	1.00
IGL02850:Lrp12	APN	15	39,741,971 (GRCm39)	missense	probably damaging	1.00
IGL03365:Lrp12	APN	15	39,735,917 (GRCm39)	missense	probably benign
R0010:Lrp12	UTSW	15	39,741,672 (GRCm39)	missense	probably damaging	1.00
R0047:Lrp12	UTSW	15	39,741,635 (GRCm39)	missense	probably damaging	1.00
R0416:Lrp12	UTSW	15	39,742,307 (GRCm39)	splice site	probably benign
R0840:Lrp12	UTSW	15	39,739,554 (GRCm39)	missense	probably damaging	1.00
R1053:Lrp12	UTSW	15	39,741,377 (GRCm39)	missense	probably damaging	1.00
R1158:Lrp12	UTSW	15	39,741,827 (GRCm39)	missense	probably damaging	1.00
R1288:Lrp12	UTSW	15	39,741,799 (GRCm39)	missense	probably damaging	1.00
R1350:Lrp12	UTSW	15	39,741,646 (GRCm39)	nonsense	probably null
R1416:Lrp12	UTSW	15	39,742,019 (GRCm39)	missense	probably damaging	1.00
R1548:Lrp12	UTSW	15	39,735,902 (GRCm39)	missense	probably damaging	0.99
R1691:Lrp12	UTSW	15	39,735,661 (GRCm39)	missense	probably damaging	1.00
R1696:Lrp12	UTSW	15	39,741,757 (GRCm39)	missense	probably damaging	0.99
R2050:Lrp12	UTSW	15	39,735,985 (GRCm39)	missense	probably damaging	0.99
R2513:Lrp12	UTSW	15	39,739,507 (GRCm39)	missense	probably damaging	1.00
R3415:Lrp12	UTSW	15	39,741,678 (GRCm39)	missense	probably damaging	1.00
R3417:Lrp12	UTSW	15	39,741,678 (GRCm39)	missense	probably damaging	1.00
R4118:Lrp12	UTSW	15	39,741,361 (GRCm39)	nonsense	probably null
R4167:Lrp12	UTSW	15	39,748,409 (GRCm39)	missense	probably damaging	1.00
R4214:Lrp12	UTSW	15	39,735,976 (GRCm39)	missense	probably benign	0.33
R4643:Lrp12	UTSW	15	39,735,418 (GRCm39)	missense	probably damaging	1.00
R5008:Lrp12	UTSW	15	39,741,852 (GRCm39)	missense	probably damaging	1.00
R5061:Lrp12	UTSW	15	39,741,650 (GRCm39)	missense	probably damaging	1.00
R5165:Lrp12	UTSW	15	39,735,857 (GRCm39)	missense	probably benign
R5910:Lrp12	UTSW	15	39,739,439 (GRCm39)	splice site	probably null
R6038:Lrp12	UTSW	15	39,735,776 (GRCm39)	missense	probably damaging	0.99
R6047:Lrp12	UTSW	15	39,735,463 (GRCm39)	missense	probably damaging	1.00
R6351:Lrp12	UTSW	15	39,741,584 (GRCm39)	missense	probably damaging	1.00
R6392:Lrp12	UTSW	15	39,735,415 (GRCm39)	missense	probably damaging	1.00
R7026:Lrp12	UTSW	15	39,743,566 (GRCm39)	missense	probably damaging	1.00
R8306:Lrp12	UTSW	15	39,741,450 (GRCm39)	missense	probably damaging	1.00
R8469:Lrp12	UTSW	15	39,735,791 (GRCm39)	missense	probably damaging	0.99
R8544:Lrp12	UTSW	15	39,741,970 (GRCm39)	nonsense	probably null
R9320:Lrp12	UTSW	15	39,741,357 (GRCm39)	missense	probably damaging	1.00
Z1176:Lrp12	UTSW	15	39,741,519 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGTCTGGAGCAGTCATTGG -3'
(R):5'- AGTCCGATGACACTGACACAG -3'

Sequencing Primer
(F):5'- TTGGCATCAATGTCCGAAGC -3'
(R):5'- GTCCGATGACACTGACACAGAAAATG -3'

Posted On

2017-08-16