Mutagenetix > Incidental Mutation

Incidental Mutation 'R6127:Trav19'

487464

Institutional Source

Beutler Lab

Gene Symbol

Trav19

Ensembl Gene

ENSMUSG00000076862

Gene Name

T cell receptor alpha variable 19

Synonyms

Gm13893

MMRRC Submission

044274-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R6127 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

54082779-54083284 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 54082999 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 25 (T25A)

Ref Sequence

ENSEMBL: ENSMUSP00000100451 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000103674]

AlphaFold

A0A0B4J1K4

Predicted Effect

probably benign
Transcript: ENSMUST00000103674
AA Change: T25A

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000100451
Gene: ENSMUSG00000076862
AA Change: T25A

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
IGv	44	118	4.26e-7	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.3%
20x: 95.2%

Validation Efficiency

98% (49/50)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700003F12Rik	A	G	2: 154,391,509 (GRCm39)	E92G	probably damaging	Het
4931429L15Rik	T	A	9: 46,220,220 (GRCm39)	D104V	probably damaging	Het
Actl9	T	C	17: 33,652,354 (GRCm39)	V138A	probably benign	Het
Agl	T	A	3: 116,551,978 (GRCm39)	I1204F	probably damaging	Het
Akna	G	T	4: 63,286,356 (GRCm39)	T1381N	possibly damaging	Het
Atm	A	C	9: 53,435,809 (GRCm39)	L167W	probably damaging	Het
Atp2b2	C	T	6: 113,790,838 (GRCm39)	E189K	probably damaging	Het
Bend7	A	G	2: 4,768,088 (GRCm39)	D348G	probably damaging	Het
Cactin	G	A	10: 81,160,143 (GRCm39)	R412H	possibly damaging	Het
Carmil1	T	C	13: 24,220,335 (GRCm39)	T726A	probably benign	Het
Csmd3	T	A	15: 47,513,624 (GRCm39)	I2829F	probably damaging	Het
Ddx50	A	T	10: 62,457,342 (GRCm39)		probably null	Het
Epha5	T	G	5: 84,218,953 (GRCm39)	K937N	probably damaging	Het
Fblim1	G	A	4: 141,312,033 (GRCm39)	R231C	probably damaging	Het
Fuca1	T	A	4: 135,662,122 (GRCm39)	I350N	probably damaging	Het
Hagh	G	T	17: 25,079,978 (GRCm39)	M152I	probably damaging	Het
Hexd	T	C	11: 121,107,825 (GRCm39)	V185A	possibly damaging	Het
Ireb2	A	G	9: 54,789,652 (GRCm39)	T109A	probably benign	Het
Kcnh2	A	G	5: 24,530,001 (GRCm39)	Y702H	probably damaging	Het
Leng1	G	A	7: 3,665,866 (GRCm39)	P157L	probably damaging	Het
Maea	C	T	5: 33,492,862 (GRCm39)		probably benign	Het
Mertk	G	T	2: 128,580,211 (GRCm39)	V222F	probably damaging	Het
Mroh2a	T	C	1: 88,162,334 (GRCm39)		probably null	Het
Muc13	G	A	16: 33,619,317 (GRCm39)	A22T	unknown	Het
Muc16	T	A	9: 18,569,174 (GRCm39)	H1115L	unknown	Het
Or2y1d	C	A	11: 49,321,633 (GRCm39)	T110K	probably damaging	Het
Or5ae2	T	A	7: 84,506,410 (GRCm39)	L278M	probably damaging	Het
Or5l13	T	A	2: 87,779,705 (GRCm39)	S291C	probably damaging	Het
Or6c69	A	G	10: 129,747,284 (GRCm39)	Y288H	probably damaging	Het
Pak5	G	A	2: 135,929,326 (GRCm39)	P619L	probably damaging	Het
Pcdh17	A	G	14: 84,770,500 (GRCm39)	K993E	probably damaging	Het
Pcdhga3	A	T	18: 37,807,757 (GRCm39)	Q70L	probably damaging	Het
Pcdhgb5	C	A	18: 37,865,932 (GRCm39)	R576S	probably damaging	Het
Pold1	T	C	7: 44,191,545 (GRCm39)	Y147C	probably damaging	Het
Prag1	T	C	8: 36,614,555 (GRCm39)	L1369P	unknown	Het
Psg29	T	A	7: 16,945,671 (GRCm39)	F414I	probably benign	Het
Robo1	A	T	16: 72,809,956 (GRCm39)	M1235L	probably benign	Het
Rp1	C	A	1: 4,419,534 (GRCm39)	S526I	possibly damaging	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Setd7	G	A	3: 51,437,502 (GRCm39)	T251I	probably damaging	Het
Slc25a41	T	A	17: 57,341,914 (GRCm39)	Y145F	probably damaging	Het
Stag1	T	C	9: 100,833,750 (GRCm39)	V1121A	probably benign	Het
Svip	T	C	7: 51,653,201 (GRCm39)	T38A	probably benign	Het
Tacc2	A	T	7: 130,227,845 (GRCm39)	H1510L	possibly damaging	Het
Trip4	A	T	9: 65,773,752 (GRCm39)		probably null	Het
Tulp1	T	A	17: 28,575,124 (GRCm39)	H447L	probably benign	Het
Vmn1r200	A	T	13: 22,579,373 (GRCm39)	T59S	probably benign	Het
Vmn2r51	A	T	7: 9,839,558 (GRCm39)	L10H	probably damaging	Het
Wee2	T	C	6: 40,426,701 (GRCm39)	Y157H	probably damaging	Het
Xrn1	T	C	9: 95,851,542 (GRCm39)	S187P	probably damaging	Het
Zfp647	G	A	15: 76,796,285 (GRCm39)	P125L	probably damaging	Het

Other mutations in Trav19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00426:Trav19	APN	14	54,083,141 (GRCm39)	missense	probably damaging	0.99
IGL01413:Trav19	APN	14	54,083,072 (GRCm39)	missense	probably damaging	1.00
IGL01873:Trav19	APN	14	54,083,173 (GRCm39)	missense	probably benign	0.00
R5725:Trav19	UTSW	14	54,082,999 (GRCm39)	missense	possibly damaging	0.55
R6272:Trav19	UTSW	14	54,083,255 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCTGAAGGCCTTGCTGTTG -3'
(R):5'- AAAACTGTGAGTCTTCCGTCTTC -3'

Sequencing Primer
(F):5'- CCTGCGGCCAGAATGTAAGTTG -3'
(R):5'- CCCTCTTATCCACATTTGAGCGTAC -3'

Posted On

2017-10-10