Incidental Mutation 'R5872:Msh5'
ID |
490519 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Msh5
|
Ensembl Gene |
ENSMUSG00000007035 |
Gene Name |
mutS homolog 5 |
Synonyms |
G7, Mut5 |
MMRRC Submission |
044079-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R5872 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
17 |
Chromosomal Location |
35247581-35265721 bp(-) (GRCm39) |
Type of Mutation |
critical splice donor site (1 bp from exon) |
DNA Base Change (assembly) |
C to T
at 35248628 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000094951
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000007245]
[ENSMUST00000007250]
[ENSMUST00000007250]
[ENSMUST00000040151]
[ENSMUST00000097338]
[ENSMUST00000172499]
[ENSMUST00000172536]
[ENSMUST00000174603]
[ENSMUST00000174117]
[ENSMUST00000174037]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably benign
Transcript: ENSMUST00000007245
|
SMART Domains |
Protein: ENSMUSP00000007245 Gene: ENSMUSG00000007030
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
VWA
|
314 |
499 |
2.59e0 |
SMART |
low complexity region
|
683 |
701 |
N/A |
INTRINSIC |
low complexity region
|
840 |
861 |
N/A |
INTRINSIC |
low complexity region
|
864 |
877 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000007250
|
SMART Domains |
Protein: ENSMUSP00000007250 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
22 |
N/A |
INTRINSIC |
low complexity region
|
33 |
49 |
N/A |
INTRINSIC |
MUTSd
|
248 |
568 |
9.72e-72 |
SMART |
MUTSac
|
584 |
775 |
2.2e-61 |
SMART |
Blast:MUTSac
|
795 |
833 |
3e-11 |
BLAST |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000007250
|
SMART Domains |
Protein: ENSMUSP00000007250 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
22 |
N/A |
INTRINSIC |
low complexity region
|
33 |
49 |
N/A |
INTRINSIC |
MUTSd
|
248 |
568 |
9.72e-72 |
SMART |
MUTSac
|
584 |
775 |
2.2e-61 |
SMART |
Blast:MUTSac
|
795 |
833 |
3e-11 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000040151
|
SMART Domains |
Protein: ENSMUSP00000047448 Gene: ENSMUSG00000036185
Domain | Start | End | E-Value | Type |
Pfam:Suppressor_APC
|
35 |
114 |
2.1e-28 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000097338
|
SMART Domains |
Protein: ENSMUSP00000094951 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
22 |
N/A |
INTRINSIC |
low complexity region
|
33 |
49 |
N/A |
INTRINSIC |
MUTSd
|
248 |
568 |
9.72e-72 |
SMART |
MUTSac
|
584 |
775 |
2.2e-61 |
SMART |
Blast:MUTSac
|
795 |
833 |
3e-11 |
BLAST |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000172499
|
SMART Domains |
Protein: ENSMUSP00000133418 Gene: ENSMUSG00000007030
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
VWA
|
314 |
478 |
7.28e0 |
SMART |
low complexity region
|
662 |
680 |
N/A |
INTRINSIC |
low complexity region
|
819 |
840 |
N/A |
INTRINSIC |
low complexity region
|
843 |
856 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000172536
|
SMART Domains |
Protein: ENSMUSP00000134426 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
22 |
N/A |
INTRINSIC |
low complexity region
|
33 |
49 |
N/A |
INTRINSIC |
MUTSd
|
248 |
568 |
9.72e-72 |
SMART |
low complexity region
|
604 |
615 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174603
|
SMART Domains |
Protein: ENSMUSP00000134065 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
low complexity region
|
6 |
22 |
N/A |
INTRINSIC |
low complexity region
|
33 |
49 |
N/A |
INTRINSIC |
MUTSd
|
248 |
493 |
1.67e-11 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174026
|
SMART Domains |
Protein: ENSMUSP00000134295 Gene: ENSMUSG00000007035
Domain | Start | End | E-Value | Type |
MUTSac
|
1 |
166 |
4e-36 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174117
|
SMART Domains |
Protein: ENSMUSP00000134423 Gene: ENSMUSG00000036185
Domain | Start | End | E-Value | Type |
low complexity region
|
55 |
65 |
N/A |
INTRINSIC |
low complexity region
|
70 |
84 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000173211
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174037
|
SMART Domains |
Protein: ENSMUSP00000133881 Gene: ENSMUSG00000036185
Domain | Start | End | E-Value | Type |
low complexity region
|
55 |
65 |
N/A |
INTRINSIC |
low complexity region
|
70 |
84 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000173124
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 97.8%
- 20x: 93.6%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: This gene encodes a member of the MutS family of proteins that play critical roles in DNA mismatch repair and meiotic homologous recombination processes. Mice lacking the encoded protein are viable but sterile, with severe defects in spermatogenesis in males and complete loss of ovarian structures in females. Mutations in a similar gene in humans have been shown to cause common variable immune deficiency (CVID) and immunoglobulin A deficiency. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2015] PHENOTYPE: Homozygotes for targeted null mutations exhibit disrupted chromosome pairing in meiosis I resulting in cell death and sterility. In males, testes size is reduced, and in females, there is a total loss of ovarian structure. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 66 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
3425401B19Rik |
A |
G |
14: 32,382,309 (GRCm39) |
S1219P |
possibly damaging |
Het |
A2ml1 |
A |
G |
6: 128,538,489 (GRCm39) |
Y644H |
probably damaging |
Het |
Abca9 |
T |
G |
11: 110,007,902 (GRCm39) |
R1232S |
possibly damaging |
Het |
Acsf2 |
C |
T |
11: 94,463,975 (GRCm39) |
V70M |
probably benign |
Het |
Ampd1 |
A |
G |
3: 102,986,446 (GRCm39) |
I42V |
probably benign |
Het |
Arhgap10 |
A |
G |
8: 78,071,267 (GRCm39) |
|
probably null |
Het |
Atp1a4 |
A |
T |
1: 172,071,975 (GRCm39) |
L432Q |
probably damaging |
Het |
Bbs12 |
T |
A |
3: 37,374,598 (GRCm39) |
C349S |
possibly damaging |
Het |
Bnc2 |
A |
G |
4: 84,211,007 (GRCm39) |
V479A |
possibly damaging |
Het |
Cald1 |
A |
T |
6: 34,748,043 (GRCm39) |
K761* |
probably null |
Het |
Cd177 |
C |
T |
7: 24,451,688 (GRCm39) |
G443R |
probably null |
Het |
Cdc42bpb |
T |
C |
12: 111,292,410 (GRCm39) |
D375G |
probably damaging |
Het |
Chsy3 |
T |
C |
18: 59,309,268 (GRCm39) |
Y174H |
probably damaging |
Het |
Cmya5 |
T |
C |
13: 93,233,943 (GRCm39) |
M382V |
probably benign |
Het |
Col1a2 |
G |
A |
6: 4,531,926 (GRCm39) |
S782N |
unknown |
Het |
Crtac1 |
C |
T |
19: 42,297,629 (GRCm39) |
|
probably null |
Het |
Csmd3 |
T |
A |
15: 47,445,923 (GRCm39) |
D3683V |
probably damaging |
Het |
Ctrc |
A |
G |
4: 141,572,354 (GRCm39) |
L62P |
probably damaging |
Het |
Cyp3a57 |
A |
T |
5: 145,307,867 (GRCm39) |
K208* |
probably null |
Het |
Dnaaf2 |
A |
T |
12: 69,244,122 (GRCm39) |
L313Q |
probably damaging |
Het |
Dtl |
A |
G |
1: 191,278,680 (GRCm39) |
L394P |
probably benign |
Het |
Ehhadh |
T |
C |
16: 21,585,305 (GRCm39) |
E192G |
probably benign |
Het |
Fads2 |
T |
C |
19: 10,059,997 (GRCm39) |
I226V |
probably benign |
Het |
Fat2 |
T |
C |
11: 55,161,208 (GRCm39) |
E3174G |
probably damaging |
Het |
Galnt14 |
C |
T |
17: 73,881,826 (GRCm39) |
R91Q |
probably damaging |
Het |
Hdhd5 |
G |
T |
6: 120,487,252 (GRCm39) |
D368E |
probably benign |
Het |
Hk3 |
T |
A |
13: 55,158,617 (GRCm39) |
I528F |
probably damaging |
Het |
Il10ra |
A |
C |
9: 45,166,951 (GRCm39) |
S533R |
possibly damaging |
Het |
Itpr3 |
G |
T |
17: 27,305,950 (GRCm39) |
K169N |
probably benign |
Het |
Lrrc17 |
A |
G |
5: 21,780,264 (GRCm39) |
T413A |
probably benign |
Het |
Mcm2 |
C |
T |
6: 88,861,053 (GRCm39) |
D882N |
probably benign |
Het |
Met |
T |
C |
6: 17,562,197 (GRCm39) |
V1186A |
probably damaging |
Het |
Nav3 |
T |
C |
10: 109,600,648 (GRCm39) |
I1326M |
probably damaging |
Het |
Nek10 |
A |
G |
14: 14,850,896 (GRCm38) |
I314V |
probably benign |
Het |
Or10g1 |
A |
C |
14: 52,648,225 (GRCm39) |
F35V |
probably damaging |
Het |
Or8b53 |
T |
A |
9: 38,667,412 (GRCm39) |
Y143N |
probably benign |
Het |
Pim1 |
A |
G |
17: 29,712,720 (GRCm39) |
E211G |
probably damaging |
Het |
Plaat1 |
T |
A |
16: 29,039,189 (GRCm39) |
Y90N |
probably benign |
Het |
Ppp1r12b |
A |
T |
1: 134,704,144 (GRCm39) |
D903E |
probably benign |
Het |
Ptpn14 |
T |
C |
1: 189,583,229 (GRCm39) |
L692P |
probably benign |
Het |
Ptprt |
A |
G |
2: 161,977,138 (GRCm39) |
C387R |
probably damaging |
Het |
Qrfprl |
A |
G |
6: 65,418,369 (GRCm39) |
|
probably benign |
Het |
Scarb1 |
A |
G |
5: 125,381,341 (GRCm39) |
Y68H |
possibly damaging |
Het |
Shisa6 |
T |
A |
11: 66,108,800 (GRCm39) |
D359V |
probably damaging |
Het |
Shprh |
T |
C |
10: 11,063,817 (GRCm39) |
S1297P |
probably damaging |
Het |
Sik1 |
T |
C |
17: 32,069,125 (GRCm39) |
D250G |
probably damaging |
Het |
Slamf7 |
A |
G |
1: 171,466,635 (GRCm39) |
L190S |
probably damaging |
Het |
Slc22a3 |
G |
A |
17: 12,652,355 (GRCm39) |
P423L |
probably damaging |
Het |
Slc35e2 |
A |
T |
4: 155,697,137 (GRCm39) |
E217V |
probably damaging |
Het |
Spocd1 |
A |
T |
4: 129,850,254 (GRCm39) |
N760I |
probably damaging |
Het |
Tas2r136 |
G |
T |
6: 132,754,294 (GRCm39) |
P278T |
possibly damaging |
Het |
Tchhl1 |
A |
T |
3: 93,377,836 (GRCm39) |
Q180L |
probably benign |
Het |
Tmem151b |
T |
A |
17: 45,858,010 (GRCm39) |
T79S |
probably benign |
Het |
Tomm70a |
T |
A |
16: 56,965,105 (GRCm39) |
C430S |
probably benign |
Het |
Trbv16 |
T |
A |
6: 41,128,936 (GRCm39) |
L40Q |
probably damaging |
Het |
Trmt1l |
T |
G |
1: 151,316,594 (GRCm39) |
I32S |
probably damaging |
Het |
Ubr4 |
A |
G |
4: 139,152,641 (GRCm39) |
T2011A |
probably damaging |
Het |
Urb1 |
C |
T |
16: 90,569,652 (GRCm39) |
W1358* |
probably null |
Het |
Usp31 |
T |
G |
7: 121,248,698 (GRCm39) |
H915P |
probably benign |
Het |
Vmn2r10 |
A |
T |
5: 109,151,377 (GRCm39) |
M79K |
possibly damaging |
Het |
Vmn2r14 |
A |
G |
5: 109,369,222 (GRCm39) |
I117T |
probably benign |
Het |
Vps13b |
A |
G |
15: 35,869,497 (GRCm39) |
H2667R |
possibly damaging |
Het |
Vwa5b1 |
G |
A |
4: 138,305,962 (GRCm39) |
T912M |
possibly damaging |
Het |
Zfp709 |
G |
A |
8: 72,643,363 (GRCm39) |
C264Y |
probably benign |
Het |
Zkscan5 |
A |
G |
5: 145,156,898 (GRCm39) |
I467V |
probably benign |
Het |
Zxdc |
A |
T |
6: 90,347,281 (GRCm39) |
D214V |
probably damaging |
Het |
|
Other mutations in Msh5 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00226:Msh5
|
APN |
17 |
35,248,857 (GRCm39) |
nonsense |
probably null |
|
IGL00491:Msh5
|
APN |
17 |
35,249,706 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL01364:Msh5
|
APN |
17 |
35,247,745 (GRCm39) |
missense |
possibly damaging |
0.70 |
R0189:Msh5
|
UTSW |
17 |
35,248,630 (GRCm39) |
missense |
probably null |
0.97 |
R0257:Msh5
|
UTSW |
17 |
35,251,840 (GRCm39) |
missense |
probably damaging |
0.99 |
R0346:Msh5
|
UTSW |
17 |
35,248,864 (GRCm39) |
missense |
probably benign |
0.09 |
R0449:Msh5
|
UTSW |
17 |
35,260,458 (GRCm39) |
missense |
probably benign |
0.09 |
R0645:Msh5
|
UTSW |
17 |
35,258,199 (GRCm39) |
missense |
probably damaging |
1.00 |
R1925:Msh5
|
UTSW |
17 |
35,248,928 (GRCm39) |
missense |
probably benign |
0.00 |
R1929:Msh5
|
UTSW |
17 |
35,263,366 (GRCm39) |
missense |
probably benign |
0.24 |
R1970:Msh5
|
UTSW |
17 |
35,252,576 (GRCm39) |
missense |
probably damaging |
0.99 |
R2025:Msh5
|
UTSW |
17 |
35,251,768 (GRCm39) |
missense |
possibly damaging |
0.90 |
R2038:Msh5
|
UTSW |
17 |
35,265,016 (GRCm39) |
missense |
probably benign |
0.12 |
R2058:Msh5
|
UTSW |
17 |
35,248,732 (GRCm39) |
missense |
probably damaging |
0.99 |
R2271:Msh5
|
UTSW |
17 |
35,263,366 (GRCm39) |
missense |
probably benign |
0.24 |
R2408:Msh5
|
UTSW |
17 |
35,264,095 (GRCm39) |
missense |
probably damaging |
1.00 |
R3079:Msh5
|
UTSW |
17 |
35,265,208 (GRCm39) |
missense |
probably benign |
0.41 |
R4409:Msh5
|
UTSW |
17 |
35,258,226 (GRCm39) |
missense |
probably damaging |
0.98 |
R4513:Msh5
|
UTSW |
17 |
35,249,664 (GRCm39) |
missense |
possibly damaging |
0.89 |
R4878:Msh5
|
UTSW |
17 |
35,257,432 (GRCm39) |
missense |
probably damaging |
1.00 |
R4951:Msh5
|
UTSW |
17 |
35,257,396 (GRCm39) |
nonsense |
probably null |
|
R5037:Msh5
|
UTSW |
17 |
35,251,369 (GRCm39) |
missense |
possibly damaging |
0.80 |
R5063:Msh5
|
UTSW |
17 |
35,261,164 (GRCm39) |
splice site |
probably null |
|
R5064:Msh5
|
UTSW |
17 |
35,262,759 (GRCm39) |
intron |
probably benign |
|
R5103:Msh5
|
UTSW |
17 |
35,248,215 (GRCm39) |
missense |
possibly damaging |
0.96 |
R6320:Msh5
|
UTSW |
17 |
35,248,900 (GRCm39) |
missense |
probably damaging |
0.97 |
R6869:Msh5
|
UTSW |
17 |
35,260,810 (GRCm39) |
splice site |
probably null |
|
R6997:Msh5
|
UTSW |
17 |
35,248,978 (GRCm39) |
missense |
probably damaging |
1.00 |
R7895:Msh5
|
UTSW |
17 |
35,263,355 (GRCm39) |
missense |
probably benign |
0.04 |
R8030:Msh5
|
UTSW |
17 |
35,248,724 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8354:Msh5
|
UTSW |
17 |
35,250,742 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8384:Msh5
|
UTSW |
17 |
35,249,613 (GRCm39) |
missense |
probably damaging |
1.00 |
R8671:Msh5
|
UTSW |
17 |
35,264,909 (GRCm39) |
nonsense |
probably null |
|
R8804:Msh5
|
UTSW |
17 |
35,251,830 (GRCm39) |
missense |
probably benign |
0.00 |
R9572:Msh5
|
UTSW |
17 |
35,250,369 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- TACAAGTCCAGAGTTTCAAGAGG -3'
(R):5'- AGGCACAGGGTCCTTGTTTG -3'
Sequencing Primer
(F):5'- TCAGCAGCTAAGAGCACTGACTG -3'
(R):5'- GTTCTCTTTACAGACCATGGAGAC -3'
|
Posted On |
2017-10-20 |