Mutagenetix > Incidental Mutation

Incidental Mutation 'R4206:Ubxn2b'

500501

Institutional Source

Beutler Lab

Gene Symbol

Ubxn2b

Ensembl Gene

ENSMUSG00000028243

Gene Name

UBX domain protein 2B

Synonyms

6430407D20Rik, 3110003A22Rik

MMRRC Submission

041035-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.277) question?

Stock #

R4206 (G1)

Quality Score

222

Status

Not validated

Chromosome

Chromosomal Location

6191105-6219788 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 6204565 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 142 (V142A)

Ref Sequence

ENSEMBL: ENSMUSP00000029907 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029907]

AlphaFold

Q0KL01

Predicted Effect

probably damaging
Transcript: ENSMUST00000029907
AA Change: V142A

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000029907
Gene: ENSMUSG00000028243
AA Change: V142A

Domain	Start	End	E-Value	Type
low complexity region	8	25	N/A	INTRINSIC
SEP	138	232	3.5e-39	SMART
UBX	251	330	1.05e-8	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921509C19Rik	T	C	2: 151,315,435 (GRCm39)	K81R	probably benign	Het
Acacb	T	C	5: 114,351,712 (GRCm39)	F1150L	probably benign	Het
Acat3	A	G	17: 13,146,273 (GRCm39)	Y237H	possibly damaging	Het
Arfgap3	T	C	15: 83,206,869 (GRCm39)	T240A	probably benign	Het
Arl6ip1	AAAATAAATAAATAAATAAATAAATA	AAAATAAATAAATAAATAAATAAATAAATA	7: 117,721,122 (GRCm39)		probably benign	Het
Cabin1	T	C	10: 75,590,675 (GRCm39)	S23G	possibly damaging	Het
Cemip2	G	T	19: 21,819,479 (GRCm39)	R1090L	probably damaging	Het
Clasp1	A	G	1: 118,506,636 (GRCm39)	N949S	probably damaging	Het
Csrp1	T	G	1: 135,673,065 (GRCm39)	C61G	probably damaging	Het
Dgka	A	T	10: 128,557,064 (GRCm39)	L637Q	probably damaging	Het
Dst	G	A	1: 34,251,328 (GRCm39)	R1801H	probably damaging	Het
Edil3	T	C	13: 89,328,397 (GRCm39)	S284P	probably damaging	Het
Eif2d	A	G	1: 131,082,100 (GRCm39)	Y64C	probably damaging	Het
Ell2	A	G	13: 75,910,067 (GRCm39)	D139G	probably damaging	Het
Fam187a	A	G	11: 102,777,038 (GRCm39)	R281G	probably damaging	Het
Gin1	A	G	1: 97,720,145 (GRCm39)	D380G	possibly damaging	Het
Gpr149	T	G	3: 62,511,924 (GRCm39)	D25A	possibly damaging	Het
Gyg1	A	G	3: 20,206,901 (GRCm39)	S90P	probably benign	Het
Hpx	C	T	7: 105,244,354 (GRCm39)	M190I	probably null	Het
Irf2bpl	C	T	12: 86,929,810 (GRCm39)	V288I	probably benign	Het
Lyst	A	G	13: 13,810,574 (GRCm39)	H748R	probably benign	Het
Mmrn1	G	A	6: 60,935,164 (GRCm39)	G220D	probably damaging	Het
Mpdz	A	T	4: 81,299,999 (GRCm39)	M333K	probably benign	Het
Muc5ac	C	T	7: 141,370,847 (GRCm39)	S2556F	possibly damaging	Het
Nfix	CAAAAA	CAAAA	8: 85,442,876 (GRCm39)		probably null	Het
Ntsr1	A	G	2: 180,142,545 (GRCm39)	D112G	probably damaging	Het
Or56b1	T	A	7: 104,285,356 (GRCm39)	N158K	possibly damaging	Het
Or7a42	T	C	10: 78,791,117 (GRCm39)	F26S	probably benign	Het
Or9s14	A	C	1: 92,536,317 (GRCm39)	T253P	possibly damaging	Het
Parg	A	G	14: 31,976,493 (GRCm39)	K178R	probably benign	Het
Pde8b	C	A	13: 95,359,053 (GRCm39)	C90F	probably benign	Het
Pld1	G	A	3: 28,174,932 (GRCm39)	V857I	probably benign	Het
Rad54l2	A	C	9: 106,594,994 (GRCm39)	V321G	probably damaging	Het
Rcn2	A	G	9: 55,952,491 (GRCm39)	Y112C	possibly damaging	Het
Rnf123	A	T	9: 107,941,162 (GRCm39)	D639E	probably benign	Het
Rufy2	C	T	10: 62,840,551 (GRCm39)	Q441*	probably null	Het
Scgb2b12	T	C	7: 32,026,063 (GRCm39)	Y43C	probably damaging	Het
Scrn3	T	A	2: 73,149,845 (GRCm39)		probably null	Het
Shroom3	G	T	5: 93,090,945 (GRCm39)	V1151F	probably damaging	Het
Slc22a8	T	C	19: 8,585,597 (GRCm39)	S321P	probably benign	Het
Tex11	C	A	X: 99,977,021 (GRCm39)	A487S	possibly damaging	Het
Tex2	A	G	11: 106,458,398 (GRCm39)		probably benign	Het
Trip13	A	G	13: 74,081,009 (GRCm39)	I119T	probably benign	Het
Tsku	C	T	7: 98,002,205 (GRCm39)	R42H	probably damaging	Het
Ttn	A	G	2: 76,602,911 (GRCm39)	I16691T	possibly damaging	Het
Tyr	A	G	7: 87,078,276 (GRCm39)	L528P	possibly damaging	Het
Uggt2	C	T	14: 119,286,674 (GRCm39)	D221N	probably damaging	Het
Wnt4	A	G	4: 137,023,654 (GRCm39)	K207R	possibly damaging	Het
Zfp608	T	C	18: 55,121,267 (GRCm39)	R107G	probably damaging	Het

Other mutations in Ubxn2b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01912:Ubxn2b	APN	4	6,203,767 (GRCm39)	splice site	probably null
IGL02096:Ubxn2b	APN	4	6,214,749 (GRCm39)	missense	probably damaging	1.00
IGL02272:Ubxn2b	APN	4	6,216,071 (GRCm39)	missense	probably damaging	1.00
R0081:Ubxn2b	UTSW	4	6,203,875 (GRCm39)	splice site	probably benign
R0482:Ubxn2b	UTSW	4	6,196,404 (GRCm39)	splice site	probably null
R1903:Ubxn2b	UTSW	4	6,208,889 (GRCm39)	missense	possibly damaging	0.82
R5071:Ubxn2b	UTSW	4	6,214,746 (GRCm39)	missense	probably damaging	1.00
R7622:Ubxn2b	UTSW	4	6,214,692 (GRCm39)	missense	probably damaging	0.98
R8034:Ubxn2b	UTSW	4	6,191,167 (GRCm39)	missense	probably benign	0.06
R8836:Ubxn2b	UTSW	4	6,216,061 (GRCm39)	missense	probably damaging	1.00
R9156:Ubxn2b	UTSW	4	6,214,646 (GRCm39)	missense	probably damaging	1.00
R9413:Ubxn2b	UTSW	4	6,204,607 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGGGCCTTCGATATTTGCAG -3'
(R):5'- GAGAGAAGCTATTTTGTCCAACTG -3'

Sequencing Primer
(F):5'- GCAGCTATTATCAGAGCTTTAAGC -3'
(R):5'- CCTATTTGGCGAATTCTCAGCAAGTG -3'

Posted On

2017-12-01