Incidental Mutation 'IGL01065:Garin4'
| ID |
50178 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Garin4
|
| Ensembl Gene |
ENSMUSG00000091017 |
| Gene Name |
golgi associated RAB2 interactor family member 4 |
| Synonyms |
4933417M04Rik, Fam71a |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.065)
|
| Stock # |
IGL01065
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
1 |
| Chromosomal Location |
190894781-190897014 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 190895224 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 473
(D473G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000127945
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000171798]
|
| AlphaFold |
B7XG49 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000171798
AA Change: D473G
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000127945
Gene: ENSMUSG00000091017
AA Change: D473G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF3699
|
120 |
193 |
3.6e-31 |
PFAM |
|
low complexity region
|
214 |
227 |
N/A |
INTRINSIC |
|
low complexity region
|
505 |
513 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that interacts with the Rab2B small GTPase and may be important for integrity of the Golgi body. A knockdown of this gene induces fragmentation of the Golgi, similar to the effect seen with a knockdown of the Rab2B small GTPase. The encoded protein has an N-terminal Rab-binding domain specific for Rab2B. [provided by RefSeq, Feb 2017]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 42 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1110038F14Rik |
G |
A |
15: 76,834,475 (GRCm39) |
V124I |
probably damaging |
Het |
| Aen |
G |
A |
7: 78,557,050 (GRCm39) |
M299I |
probably damaging |
Het |
| Apob |
A |
G |
12: 8,053,299 (GRCm39) |
Y1247C |
probably damaging |
Het |
| Atg16l1 |
A |
T |
1: 87,713,653 (GRCm39) |
N401I |
probably damaging |
Het |
| Bcam |
T |
C |
7: 19,490,724 (GRCm39) |
H591R |
probably benign |
Het |
| Bcat1 |
T |
C |
6: 144,946,015 (GRCm39) |
S446G |
possibly damaging |
Het |
| C2cd5 |
A |
G |
6: 143,024,005 (GRCm39) |
S262P |
probably damaging |
Het |
| Clrn1 |
T |
C |
3: 58,792,446 (GRCm39) |
K6E |
probably damaging |
Het |
| D17H6S53E |
A |
T |
17: 35,346,259 (GRCm39) |
K57* |
probably null |
Het |
| Dennd1a |
T |
A |
2: 37,734,917 (GRCm39) |
I17F |
probably benign |
Het |
| Depdc7 |
A |
C |
2: 104,552,426 (GRCm39) |
Y460* |
probably null |
Het |
| Disp3 |
T |
C |
4: 148,345,640 (GRCm39) |
Y400C |
probably damaging |
Het |
| Edem3 |
T |
C |
1: 151,653,302 (GRCm39) |
Y203H |
probably damaging |
Het |
| Fbxl5 |
A |
G |
5: 43,902,676 (GRCm39) |
C679R |
probably damaging |
Het |
| Fhad1 |
T |
C |
4: 141,632,923 (GRCm39) |
T1194A |
probably benign |
Het |
| Gipc2 |
A |
G |
3: 151,808,294 (GRCm39) |
L253P |
possibly damaging |
Het |
| Gpr26 |
T |
C |
7: 131,569,230 (GRCm39) |
Y192H |
probably damaging |
Het |
| Hoxb6 |
A |
G |
11: 96,191,635 (GRCm39) |
T186A |
probably damaging |
Het |
| Kif24 |
A |
G |
4: 41,423,639 (GRCm39) |
|
probably benign |
Het |
| Lonp1 |
T |
C |
17: 56,922,500 (GRCm39) |
|
probably benign |
Het |
| Lrp1 |
A |
G |
10: 127,410,907 (GRCm39) |
I1427T |
probably benign |
Het |
| Lrp2 |
C |
T |
2: 69,299,780 (GRCm39) |
E3091K |
possibly damaging |
Het |
| Lzts1 |
T |
C |
8: 69,588,744 (GRCm39) |
N404S |
probably benign |
Het |
| Map3k4 |
A |
T |
17: 12,451,877 (GRCm39) |
D1470E |
probably damaging |
Het |
| Med30 |
A |
T |
15: 52,584,456 (GRCm39) |
N125Y |
probably benign |
Het |
| Mgam |
G |
A |
6: 40,639,644 (GRCm39) |
|
probably null |
Het |
| Mrps33 |
G |
A |
6: 39,779,447 (GRCm39) |
R83* |
probably null |
Het |
| Notch3 |
A |
T |
17: 32,365,390 (GRCm39) |
Y1107* |
probably null |
Het |
| Rc3h2 |
T |
A |
2: 37,267,856 (GRCm39) |
|
probably benign |
Het |
| Rev1 |
T |
C |
1: 38,138,090 (GRCm39) |
E65G |
possibly damaging |
Het |
| Rgl1 |
T |
C |
1: 152,394,893 (GRCm39) |
N760S |
probably damaging |
Het |
| Slc16a4 |
T |
C |
3: 107,210,416 (GRCm39) |
I362T |
possibly damaging |
Het |
| Slc25a24 |
G |
A |
3: 109,065,967 (GRCm39) |
|
probably benign |
Het |
| Slc2a4 |
G |
T |
11: 69,836,782 (GRCm39) |
|
probably benign |
Het |
| Slc39a13 |
T |
A |
2: 90,894,051 (GRCm39) |
I256F |
probably damaging |
Het |
| Spdya |
A |
T |
17: 71,863,320 (GRCm39) |
N23I |
possibly damaging |
Het |
| Srpra |
T |
A |
9: 35,124,734 (GRCm39) |
W112R |
probably damaging |
Het |
| Tbc1d4 |
A |
C |
14: 101,686,629 (GRCm39) |
|
probably benign |
Het |
| Ttc39d |
G |
A |
17: 80,523,703 (GRCm39) |
G121R |
probably damaging |
Het |
| Tuba3a |
C |
T |
6: 125,259,920 (GRCm39) |
V9M |
possibly damaging |
Het |
| Upf2 |
A |
G |
2: 5,966,111 (GRCm39) |
K244E |
unknown |
Het |
| Usp39 |
T |
C |
6: 72,316,958 (GRCm39) |
Y141C |
probably damaging |
Het |
|
| Other mutations in Garin4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01541:Garin4
|
APN |
1 |
190,896,606 (GRCm39) |
nonsense |
probably null |
|
|
IGL02364:Garin4
|
APN |
1 |
190,895,713 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02573:Garin4
|
APN |
1 |
190,896,067 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02705:Garin4
|
APN |
1 |
190,896,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03057:Garin4
|
APN |
1 |
190,895,141 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03283:Garin4
|
APN |
1 |
190,895,029 (GRCm39) |
missense |
probably benign |
0.08 |
|
R0234:Garin4
|
UTSW |
1 |
190,895,105 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0234:Garin4
|
UTSW |
1 |
190,895,105 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0402:Garin4
|
UTSW |
1 |
190,896,637 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0635:Garin4
|
UTSW |
1 |
190,895,924 (GRCm39) |
missense |
probably benign |
|
|
R0750:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1118:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1521:Garin4
|
UTSW |
1 |
190,896,219 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1573:Garin4
|
UTSW |
1 |
190,896,682 (GRCm39) |
start gained |
probably benign |
|
|
R1654:Garin4
|
UTSW |
1 |
190,895,678 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1699:Garin4
|
UTSW |
1 |
190,896,018 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1900:Garin4
|
UTSW |
1 |
190,896,631 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R2912:Garin4
|
UTSW |
1 |
190,895,425 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2939:Garin4
|
UTSW |
1 |
190,896,103 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R3747:Garin4
|
UTSW |
1 |
190,896,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4133:Garin4
|
UTSW |
1 |
190,895,205 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6038:Garin4
|
UTSW |
1 |
190,894,919 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6038:Garin4
|
UTSW |
1 |
190,894,919 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7179:Garin4
|
UTSW |
1 |
190,896,218 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7182:Garin4
|
UTSW |
1 |
190,895,548 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7261:Garin4
|
UTSW |
1 |
190,896,308 (GRCm39) |
missense |
unknown |
|
|
R7326:Garin4
|
UTSW |
1 |
190,896,550 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7363:Garin4
|
UTSW |
1 |
190,895,910 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7960:Garin4
|
UTSW |
1 |
190,895,645 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8120:Garin4
|
UTSW |
1 |
190,895,022 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8916:Garin4
|
UTSW |
1 |
190,895,857 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9011:Garin4
|
UTSW |
1 |
190,895,258 (GRCm39) |
missense |
probably benign |
0.08 |
|
R9090:Garin4
|
UTSW |
1 |
190,895,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9165:Garin4
|
UTSW |
1 |
190,895,258 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9189:Garin4
|
UTSW |
1 |
190,894,900 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R9271:Garin4
|
UTSW |
1 |
190,895,153 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Garin4
|
UTSW |
1 |
190,895,942 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Posted On |
2013-06-21 |
Incidental Mutation