Mutagenetix > Incidental Mutation

Incidental Mutation 'R5950:Lrrc14'

501936

Institutional Source

Beutler Lab

Gene Symbol

Lrrc14

Ensembl Gene

ENSMUSG00000033728

Gene Name

leucine rich repeat containing 14

Synonyms

E130306I01Rik

MMRRC Submission

044140-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.091) question?

Stock #

R5950 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

76594820-76599297 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to T at 76599510 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000154957 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036423] [ENSMUST00000036852] [ENSMUST00000049956] [ENSMUST00000127208] [ENSMUST00000136840] [ENSMUST00000137649] [ENSMUST00000230544] [ENSMUST00000230724] [ENSMUST00000155735] [ENSMUST00000142610] [ENSMUST00000155225]

AlphaFold

Q8VC16

Predicted Effect

probably benign
Transcript: ENSMUST00000036423

SMART Domains

Protein: ENSMUSP00000049466
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC
SCOP:d1a4ya_	222	413	2e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000036852

SMART Domains

Protein: ENSMUSP00000044363
Gene: ENSMUSG00000033762

Domain	Start	End	E-Value	Type
Pfam:Drc1-Sld2	4	132	2.8e-14	PFAM
low complexity region	169	187	N/A	INTRINSIC
low complexity region	368	379	N/A	INTRINSIC
ZnF_C2HC	394	410	5.67e-5	SMART
DEXDc	494	701	5.86e-28	SMART
HELICc	736	831	1.48e-24	SMART
Blast:DEXDc	902	1117	3e-46	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000049956

SMART Domains

Protein: ENSMUSP00000061906
Gene: ENSMUSG00000033707

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
LRRNT	30	62	1.04e-2	SMART
LRR	61	80	3.18e2	SMART
LRR_TYP	81	104	2.99e-4	SMART
LRR	106	128	3.87e1	SMART
LRR_TYP	129	152	8.22e-2	SMART
LRR_TYP	153	176	5.06e-2	SMART
LRR	177	200	2.02e-1	SMART
LRRCT	212	266	2e-10	SMART
IGc2	280	360	1.02e-9	SMART
transmembrane domain	409	431	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127208

SMART Domains

Protein: ENSMUSP00000114921
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC
SCOP:d1a4ya_	222	413	2e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136840

SMART Domains

Protein: ENSMUSP00000119670
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000137649

SMART Domains

Protein: ENSMUSP00000121982
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC
SCOP:d1a4ya_	222	413	2e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138132

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142506

Predicted Effect

probably benign
Transcript: ENSMUST00000230544

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154531

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146855

Predicted Effect

probably benign
Transcript: ENSMUST00000230724

Predicted Effect

probably benign
Transcript: ENSMUST00000155735

SMART Domains

Protein: ENSMUSP00000115446
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC
SCOP:d1a4ya_	222	413	2e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146725

Predicted Effect

probably benign
Transcript: ENSMUST00000142610

SMART Domains

Protein: ENSMUSP00000117780
Gene: ENSMUSG00000033728

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
low complexity region	55	66	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000155225

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.6%

Validation Efficiency

93% (75/81)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a leucine-rich repeat-containing protein. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Dec 2012]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca15	G	A	7: 119,981,879 (GRCm39)	G1065R	probably damaging	Het
Acox2	A	T	14: 8,255,793 (GRCm38)	Y113N	probably benign	Het
Arid4b	T	A	13: 14,365,849 (GRCm39)		probably benign	Het
Atf6	C	T	1: 170,662,448 (GRCm39)	G271R	probably damaging	Het
Bnip5	T	A	17: 29,124,729 (GRCm39)	Q256L	possibly damaging	Het
Cct8l1	C	A	5: 25,722,741 (GRCm39)	F485L	probably benign	Het
Cdk5r2	A	G	1: 74,894,561 (GRCm39)	E102G	probably damaging	Het
Celsr1	A	T	15: 85,916,701 (GRCm39)	V424E	probably damaging	Het
Ces1h	T	C	8: 94,089,587 (GRCm39)	T271A	probably benign	Het
Cfap44	T	C	16: 44,300,210 (GRCm39)	I1738T	probably damaging	Het
Cntnap3	G	A	13: 64,935,583 (GRCm39)	L427F	probably damaging	Het
Crybg3	T	C	16: 59,313,934 (GRCm39)		probably benign	Het
Dis3l2	A	G	1: 86,948,830 (GRCm39)	D589G	probably damaging	Het
Dlg1	A	G	16: 31,484,401 (GRCm39)	R10G	probably damaging	Het
Dnajc1	A	C	2: 18,311,752 (GRCm39)		probably benign	Het
Dpy19l2	T	A	9: 24,492,430 (GRCm39)	T723S	probably benign	Het
Dsg3	A	T	18: 20,671,586 (GRCm39)	N764Y	probably damaging	Het
Dst	G	T	1: 34,301,141 (GRCm39)	R3654L	probably damaging	Het
Dynlt5	T	G	4: 102,861,447 (GRCm39)	L147R	probably damaging	Het
Evl	C	T	12: 108,641,812 (GRCm39)	T198I	probably benign	Het
Hectd2	A	G	19: 36,574,639 (GRCm39)		probably benign	Het
Hsp90b1	A	G	10: 86,537,609 (GRCm39)	V232A	possibly damaging	Het
Igsf5	T	C	16: 96,174,072 (GRCm39)	V34A	probably benign	Het
Ikzf2	A	T	1: 69,722,403 (GRCm39)	N41K	probably damaging	Het
Kif6	G	T	17: 50,022,116 (GRCm39)	A339S	probably damaging	Het
Klhl1	T	A	14: 96,477,790 (GRCm39)	D426V	probably damaging	Het
Knop1	A	C	7: 118,452,557 (GRCm39)	V54G	probably damaging	Het
Lama4	T	A	10: 38,906,444 (GRCm39)	V270D	probably benign	Het
Lnx2	A	G	5: 146,961,160 (GRCm39)		probably null	Het
Lrp5	A	T	19: 3,652,333 (GRCm39)	V1179E	probably benign	Het
Lrpprc	T	G	17: 85,047,598 (GRCm39)	D878A	possibly damaging	Het
Ltbp1	A	T	17: 75,580,865 (GRCm39)	D660V	probably damaging	Het
Macf1	C	G	4: 123,333,229 (GRCm39)		probably null	Het
Map3k21	C	A	8: 126,668,499 (GRCm39)	T695K	possibly damaging	Het
Mcm3ap	T	A	10: 76,324,253 (GRCm39)	D895E	possibly damaging	Het
Mink1	T	A	11: 70,500,412 (GRCm39)	D779E	possibly damaging	Het
Mkrn3	T	C	7: 62,069,467 (GRCm39)	E108G	probably damaging	Het
Mtcl3	T	C	10: 29,019,644 (GRCm39)		probably benign	Het
Nars1	A	G	18: 64,643,556 (GRCm39)	V141A	possibly damaging	Het
Or8g34	T	C	9: 39,373,633 (GRCm39)	V299A	probably benign	Het
Pard3b	T	A	1: 62,255,690 (GRCm39)	Y572N	probably benign	Het
Pcnx3	A	C	19: 5,717,186 (GRCm39)	M1599R	possibly damaging	Het
Pitx2	A	G	3: 129,012,169 (GRCm39)	S180G	probably damaging	Het
Pkd2l1	A	C	19: 44,140,529 (GRCm39)	V608G	probably benign	Het
Pkhd1l1	A	G	15: 44,396,361 (GRCm39)	D1961G	probably benign	Het
Pxylp1	T	C	9: 96,721,179 (GRCm39)	T109A	probably damaging	Het
Rai1	T	A	11: 60,078,419 (GRCm39)	C828S	probably damaging	Het
Ralgapa1	T	A	12: 55,785,050 (GRCm39)	T737S	possibly damaging	Het
Scn11a	A	G	9: 119,640,190 (GRCm39)	V235A	probably damaging	Het
Sfxn1	A	T	13: 54,245,306 (GRCm39)	T134S	probably benign	Het
Skint1	A	G	4: 111,876,532 (GRCm39)	Y151C	probably benign	Het
Slc11a1	G	T	1: 74,416,335 (GRCm39)	W54L	probably benign	Het
Slc49a3	A	T	5: 108,593,351 (GRCm39)	H162Q	probably damaging	Het
Synpo2l	T	A	14: 20,716,003 (GRCm39)	Q191L	probably benign	Het
Tank	A	G	2: 61,483,913 (GRCm39)		probably benign	Het
Terb1	A	T	8: 105,215,117 (GRCm39)		probably null	Het
Trdc	T	C	14: 54,381,768 (GRCm39)		probably benign	Het
Tsen34	A	G	7: 3,697,787 (GRCm39)	I63V	probably null	Het
Ust	T	C	10: 8,123,865 (GRCm39)	H257R	probably benign	Het
Vmn2r6	T	C	3: 64,472,652 (GRCm39)	Q23R	probably benign	Het
Wdr93	A	T	7: 79,423,179 (GRCm39)	H481L	probably damaging	Het
Xirp2	A	G	2: 67,341,664 (GRCm39)	T1302A	possibly damaging	Het
Zc3h6	C	A	2: 128,839,710 (GRCm39)	Y174*	probably null	Het
Zcchc7	T	G	4: 44,931,244 (GRCm39)	D144E	possibly damaging	Het
Zfp472	T	A	17: 33,196,481 (GRCm39)	H185Q	possibly damaging	Het
Zfp523	C	A	17: 28,421,532 (GRCm39)	P66H	probably benign	Het
Zfp712	A	T	13: 67,192,881 (GRCm39)	L57Q	probably damaging	Het
Zik1	G	A	7: 10,224,498 (GRCm39)	Q200*	probably null	Het

Other mutations in Lrrc14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02017:Lrrc14	APN	15	76,597,942 (GRCm39)	missense	probably damaging	0.99
IGL03213:Lrrc14	APN	15	76,597,983 (GRCm39)	missense	possibly damaging	0.95
Sojourn	UTSW	15	76,597,646 (GRCm39)	missense	possibly damaging	0.91
Sumo	UTSW	15	76,597,765 (GRCm39)	missense	probably benign	0.17
R0302:Lrrc14	UTSW	15	76,598,552 (GRCm39)	missense	probably benign	0.28
R2417:Lrrc14	UTSW	15	76,597,621 (GRCm39)	missense	probably damaging	1.00
R3423:Lrrc14	UTSW	15	76,597,318 (GRCm39)	splice site	probably null
R3930:Lrrc14	UTSW	15	76,597,765 (GRCm39)	missense	probably benign	0.17
R3931:Lrrc14	UTSW	15	76,597,765 (GRCm39)	missense	probably benign	0.17
R4622:Lrrc14	UTSW	15	76,600,540 (GRCm39)	unclassified	probably benign
R4863:Lrrc14	UTSW	15	76,597,562 (GRCm39)	splice site	probably null
R5290:Lrrc14	UTSW	15	76,598,143 (GRCm39)	missense	probably benign	0.17
R5451:Lrrc14	UTSW	15	76,598,173 (GRCm39)	missense	probably benign	0.01
R6561:Lrrc14	UTSW	15	76,597,646 (GRCm39)	missense	possibly damaging	0.91
R6609:Lrrc14	UTSW	15	76,598,453 (GRCm39)	missense	probably benign
R7341:Lrrc14	UTSW	15	76,598,711 (GRCm39)	missense	probably damaging	1.00
R7638:Lrrc14	UTSW	15	76,598,173 (GRCm39)	missense	probably benign	0.01
R8046:Lrrc14	UTSW	15	76,598,731 (GRCm39)	missense	possibly damaging	0.78
R8223:Lrrc14	UTSW	15	76,598,756 (GRCm39)	missense	probably damaging	1.00
R8393:Lrrc14	UTSW	15	76,598,398 (GRCm39)	missense	probably damaging	1.00
R8707:Lrrc14	UTSW	15	76,597,416 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GTTGCTTTATCATGACCAATCTGTC -3'
(R):5'- CGTCATTGACCGATCCAAGC -3'

Sequencing Primer
(F):5'- TGACCAATCTGTCACCCAATATACTG -3'
(R):5'- TTGACCGATCCAAGCCCCTG -3'

Posted On

2018-01-10