Mutagenetix > Incidental Mutation

Incidental Mutation 'R6188:Lingo4'

502301

Institutional Source

Beutler Lab

Gene Symbol

Lingo4

Ensembl Gene

ENSMUSG00000044505

Gene Name

leucine rich repeat and Ig domain containing 4

Synonyms

LERN4, Lrrn6d, A530050P17Rik

MMRRC Submission

044328-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R6188 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

94306526-94311820 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 94310157 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 365 (E365G)

Ref Sequence

ENSEMBL: ENSMUSP00000058050 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050975] [ENSMUST00000197040]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000050975
AA Change: E365G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000058050
Gene: ENSMUSG00000044505
AA Change: E365G

Domain	Start	End	E-Value	Type
LRRNT	55	89	1.23e-4	SMART
LRR	88	107	2.76e2	SMART
LRR_TYP	108	131	1.02e-6	SMART
LRR_TYP	132	155	7.26e-3	SMART
LRR	156	179	1.33e1	SMART
LRR_TYP	180	203	5.42e-2	SMART
LRR	204	227	4.45e1	SMART
LRR	228	251	3.27e1	SMART
LRR	300	323	4.83e0	SMART
LRR	324	347	3.07e-1	SMART
LRR	348	371	3.36e1	SMART
LRRCT	383	436	5.24e-5	SMART
IGc2	451	516	3.53e-13	SMART
transmembrane domain	560	582	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000197040

SMART Domains

Protein: ENSMUSP00000143763
Gene: ENSMUSG00000028150

Domain	Start	End	E-Value	Type
ZnF_C4	7	78	7.2e-37	SMART
low complexity region	95	112	N/A	INTRINSIC
HOLI	299	453	3.78e-22	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000198829

Meta Mutation Damage Score

0.4333

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.5%

Validation Efficiency

98% (61/62)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	A	T	13: 77,331,850 (GRCm39)	I88F	possibly damaging	Het
4930407I10Rik	T	C	15: 81,943,471 (GRCm39)	S28P	probably benign	Het
a	A	T	2: 154,889,602 (GRCm39)	N56I	probably damaging	Het
Apoe	C	A	7: 19,432,305 (GRCm39)		probably benign	Het
Aspm	C	A	1: 139,406,977 (GRCm39)	R1955S	possibly damaging	Het
Boc	G	A	16: 44,319,911 (GRCm39)	L358F	possibly damaging	Het
Cadm2	A	T	16: 66,612,195 (GRCm39)		probably null	Het
Ccdc183	T	C	2: 25,499,764 (GRCm39)	E384G	probably benign	Het
Ccl12	A	G	11: 81,993,943 (GRCm39)	T67A	probably damaging	Het
Cep120	T	C	18: 53,857,529 (GRCm39)	D312G	probably benign	Het
Cmya5	A	G	13: 93,229,952 (GRCm39)	V1712A	possibly damaging	Het
Cmya5	A	G	13: 93,233,784 (GRCm39)	S435P	possibly damaging	Het
Dmbt1	A	T	7: 130,699,361 (GRCm39)	N997Y	probably damaging	Het
Dock2	T	A	11: 34,453,396 (GRCm39)	I86F	probably damaging	Het
Duox1	A	G	2: 122,150,275 (GRCm39)	Q168R	probably benign	Het
Epb41l4a	T	A	18: 33,965,718 (GRCm39)	I370L	probably benign	Het
Erc2	T	A	14: 28,039,208 (GRCm39)	D950E	probably damaging	Het
Exoc6b	A	G	6: 84,832,479 (GRCm39)	V405A	probably damaging	Het
F13a1	T	C	13: 37,209,752 (GRCm39)	D71G	probably benign	Het
Fam151a	A	T	4: 106,602,696 (GRCm39)	Y205F	possibly damaging	Het
Fcnb	C	A	2: 27,969,202 (GRCm39)	R165M	possibly damaging	Het
Fndc3a	C	T	14: 72,827,401 (GRCm39)	V50I	probably damaging	Het
Gm13276	C	T	4: 88,704,096 (GRCm39)	Q51*	probably null	Het
Grik1	T	C	16: 87,852,959 (GRCm39)	T75A	probably benign	Het
Grip2	A	G	6: 91,740,514 (GRCm39)	L1015P	probably damaging	Het
Hnrnpk	A	G	13: 58,541,967 (GRCm39)	F339L	probably benign	Het
Iqgap3	A	G	3: 88,006,200 (GRCm39)	D537G	probably benign	Het
Kars1	C	T	8: 112,735,113 (GRCm39)		probably null	Het
Kpna7	G	T	5: 144,929,654 (GRCm39)	N390K	probably damaging	Het
Krt36	A	T	11: 99,993,246 (GRCm39)	S410T	probably benign	Het
Liph	T	C	16: 21,803,018 (GRCm39)	D17G	probably benign	Het
Lmbrd1	C	A	1: 24,750,626 (GRCm39)	N166K	probably benign	Het
Lypd9	T	C	11: 58,337,182 (GRCm39)	E97G	probably benign	Het
Nup155	T	C	15: 8,139,059 (GRCm39)	S44P	probably damaging	Het
Or2m12	A	G	16: 19,105,307 (GRCm39)	M62T	probably damaging	Het
Or4a72	A	T	2: 89,405,538 (GRCm39)	C177*	probably null	Het
Or5a3	A	G	19: 12,399,974 (GRCm39)	I100M	probably benign	Het
Pcdhga6	T	C	18: 37,841,324 (GRCm39)	V348A	probably benign	Het
Phc3	G	A	3: 30,991,198 (GRCm39)	Q295*	probably null	Het
Phyh	A	G	2: 4,932,301 (GRCm39)	E129G	probably damaging	Het
Polb	A	G	8: 23,137,463 (GRCm39)	S96P	probably damaging	Het
Ppp1r9a	A	T	6: 5,158,113 (GRCm39)	K1174*	probably null	Het
Ppp1r9b	C	T	11: 94,882,662 (GRCm39)	R97W	probably damaging	Het
Pttg1ip	T	C	10: 77,418,342 (GRCm39)		probably null	Het
Pygm	G	A	19: 6,447,967 (GRCm39)		probably null	Het
Rgs20	GGAGAGAG	GGAGAG	1: 5,091,106 (GRCm39)		probably null	Het
Rlf	T	C	4: 121,027,963 (GRCm39)	H111R	probably damaging	Het
Rmdn3	A	G	2: 118,969,831 (GRCm39)		probably null	Het
Ror2	T	A	13: 53,265,347 (GRCm39)	T570S	probably damaging	Het
Sel1l3	A	C	5: 53,313,061 (GRCm39)	I542R	possibly damaging	Het
Serpinb3d	A	G	1: 107,006,237 (GRCm39)	F284L	probably damaging	Het
Slc35e2	C	T	4: 155,694,483 (GRCm39)	P10L	probably benign	Het
Slc38a2	A	G	15: 96,590,397 (GRCm39)		probably null	Het
Spata31e2	T	A	1: 26,724,784 (GRCm39)	Y132F	probably damaging	Het
Spata31h1	A	G	10: 82,121,091 (GRCm39)	I3973T	probably damaging	Het
Tet2	T	C	3: 133,186,087 (GRCm39)	S1117G	probably benign	Het
Trav15-1-dv6-1	C	T	14: 53,797,414 (GRCm39)	A21V	probably damaging	Het
Tsr3	G	T	17: 25,460,835 (GRCm39)	D234Y	probably null	Het
Vmn1r220	A	T	13: 23,368,084 (GRCm39)	L204H	probably damaging	Het
Vmn1r3	A	T	4: 3,185,017 (GRCm39)	S97T	probably damaging	Het
Zfp599	A	G	9: 22,161,286 (GRCm39)	F293S	probably damaging	Het
Zfp983	A	G	17: 21,877,935 (GRCm39)	Y46C	probably damaging	Het

Other mutations in Lingo4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01074:Lingo4	APN	3	94,310,595 (GRCm39)	missense	probably benign	0.00
IGL02662:Lingo4	APN	3	94,309,124 (GRCm39)	unclassified	probably benign
IGL02687:Lingo4	APN	3	94,309,404 (GRCm39)	missense	probably damaging	1.00
IGL02711:Lingo4	APN	3	94,310,700 (GRCm39)	missense	probably benign
IGL03001:Lingo4	APN	3	94,309,703 (GRCm39)	missense	probably damaging	1.00
IGL03260:Lingo4	APN	3	94,309,250 (GRCm39)	missense	probably benign
PIT4449001:Lingo4	UTSW	3	94,309,239 (GRCm39)	missense	probably benign
R0088:Lingo4	UTSW	3	94,309,340 (GRCm39)	missense	probably benign	0.39
R0616:Lingo4	UTSW	3	94,310,388 (GRCm39)	missense	probably benign	0.00
R1455:Lingo4	UTSW	3	94,306,699 (GRCm39)	unclassified	probably benign
R1733:Lingo4	UTSW	3	94,310,485 (GRCm39)	missense	probably benign	0.00
R2001:Lingo4	UTSW	3	94,310,382 (GRCm39)	missense	probably damaging	1.00
R2085:Lingo4	UTSW	3	94,309,552 (GRCm39)	missense	probably damaging	1.00
R3793:Lingo4	UTSW	3	94,309,685 (GRCm39)	missense	probably benign
R3805:Lingo4	UTSW	3	94,309,407 (GRCm39)	missense	probably damaging	1.00
R3806:Lingo4	UTSW	3	94,309,407 (GRCm39)	missense	probably damaging	1.00
R4438:Lingo4	UTSW	3	94,310,204 (GRCm39)	missense	possibly damaging	0.79
R4660:Lingo4	UTSW	3	94,310,672 (GRCm39)	missense	probably benign	0.00
R4724:Lingo4	UTSW	3	94,310,183 (GRCm39)	nonsense	probably null
R4981:Lingo4	UTSW	3	94,306,761 (GRCm39)	missense	probably benign	0.18
R4994:Lingo4	UTSW	3	94,310,308 (GRCm39)	missense	probably benign	0.02
R4994:Lingo4	UTSW	3	94,309,848 (GRCm39)	missense	probably benign
R5600:Lingo4	UTSW	3	94,309,220 (GRCm39)	missense	probably benign
R6267:Lingo4	UTSW	3	94,310,697 (GRCm39)	missense	probably benign	0.02
R6303:Lingo4	UTSW	3	94,310,513 (GRCm39)	missense	probably damaging	1.00
R6304:Lingo4	UTSW	3	94,310,513 (GRCm39)	missense	probably damaging	1.00
R6789:Lingo4	UTSW	3	94,306,662 (GRCm39)	unclassified	probably benign
R7313:Lingo4	UTSW	3	94,310,451 (GRCm39)	missense	possibly damaging	0.95
R7329:Lingo4	UTSW	3	94,310,162 (GRCm39)	missense	probably benign
R7631:Lingo4	UTSW	3	94,306,767 (GRCm39)	missense	possibly damaging	0.93
R7908:Lingo4	UTSW	3	94,309,541 (GRCm39)	missense	probably benign	0.19
R8277:Lingo4	UTSW	3	94,309,931 (GRCm39)	missense	possibly damaging	0.61
R8848:Lingo4	UTSW	3	94,310,840 (GRCm39)	missense	probably benign
R9257:Lingo4	UTSW	3	94,310,676 (GRCm39)	missense	probably benign	0.05
R9753:Lingo4	UTSW	3	94,309,493 (GRCm39)	nonsense	probably null
X0054:Lingo4	UTSW	3	94,310,683 (GRCm39)	missense	possibly damaging	0.54
Z1177:Lingo4	UTSW	3	94,310,301 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGCAATCTGAGCTCAGTACC -3'
(R):5'- AGGCTCTTCCCTTGGACATG -3'

Sequencing Primer
(F):5'- CGGATCTTGGATCTATCTCAGAATC -3'
(R):5'- CTCTTCCCTTGGACATGTTGGG -3'

Posted On

2018-02-27