Incidental Mutation 'R6199:Lgals4'
Institutional Source Beutler Lab
Gene Symbol Lgals4
Ensembl Gene ENSMUSG00000053964
Gene Namelectin, galactose binding, soluble 4
MMRRC Submission 044339-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R6199 (G1)
Quality Score225.009
Status Validated
Chromosomal Location28833854-28841708 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 28835892 bp
Amino Acid Change Arginine to Histidine at position 27 (R27H)
Ref Sequence ENSEMBL: ENSMUSP00000141005 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000066264] [ENSMUST00000066723] [ENSMUST00000132376] [ENSMUST00000151547] [ENSMUST00000208971]
Predicted Effect probably benign
Transcript: ENSMUST00000066264
SMART Domains Protein: ENSMUSP00000066092
Gene: ENSMUSG00000053898

Pfam:ECH_1 61 321 7.2e-50 PFAM
Pfam:ECH_2 66 258 9.6e-29 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000066723
AA Change: R67H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000066461
Gene: ENSMUSG00000053964
AA Change: R67H

GLECT 17 150 1.24e-59 SMART
Gal-bind_lectin 23 149 1.49e-59 SMART
low complexity region 151 162 N/A INTRINSIC
GLECT 196 326 1.49e-53 SMART
Gal-bind_lectin 202 326 2.02e-56 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124017
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125155
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126603
Predicted Effect noncoding transcript
Transcript: ENSMUST00000127093
Predicted Effect probably benign
Transcript: ENSMUST00000132376
SMART Domains Protein: ENSMUSP00000116992
Gene: ENSMUSG00000053898

Pfam:ECH 26 166 2.1e-23 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137834
Predicted Effect noncoding transcript
Transcript: ENSMUST00000143708
Predicted Effect probably damaging
Transcript: ENSMUST00000151547
AA Change: R27H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000141005
Gene: ENSMUSG00000053964
AA Change: R27H

Gal-bind_lectin 1 109 4e-45 SMART
GLECT 1 110 2.3e-38 SMART
low complexity region 111 122 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000208971
AA Change: R67H

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.4%
Validation Efficiency 100% (53/53)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The galectins are a family of beta-galactoside-binding proteins implicated in modulating cell-cell and cell-matrix interactions. The expression of this gene is restricted to small intestine, colon, and rectum, and it is underexpressed in colorectal cancer. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adck1 A T 12: 88,441,117 D206V possibly damaging Het
Ank2 T A 3: 127,004,006 D685V probably damaging Het
Baz2b A G 2: 59,978,675 S77P probably benign Het
C430049E01Rik T C 8: 71,525,465 N83D probably benign Het
Ceacam5 A T 7: 17,714,885 T59S probably benign Het
Ces1e A C 8: 93,217,535 F218L probably damaging Het
Cps1 TGTCCATTGGTC TGTC 1: 67,162,615 probably null Het
Dab1 C T 4: 104,731,751 A524V probably benign Het
Eftud2 A T 11: 102,840,057 V843E probably damaging Het
Fuca2 G T 10: 13,506,039 W232L probably damaging Het
Gdf7 T C 12: 8,298,832 D155G unknown Het
Ggcx G T 6: 72,430,139 V753F possibly damaging Het
Ghrhr A T 6: 55,379,188 T89S probably benign Het
Gpr151 T C 18: 42,578,554 K353R probably benign Het
Gpr75 T C 11: 30,891,527 L144P probably damaging Het
Gsdmc2 A G 15: 63,825,113 I403T probably benign Het
H2-M1 A G 17: 36,671,167 S181P probably benign Het
Ick T C 9: 78,164,639 V531A probably benign Het
Igsf5 C T 16: 96,421,739 S61L possibly damaging Het
Insc A T 7: 114,791,166 probably null Het
Izumo4 G A 10: 80,702,873 G53D probably damaging Het
Ksr1 G A 11: 79,020,441 P693S possibly damaging Het
Lpcat2b A G 5: 107,433,305 R167G probably benign Het
Man1a C T 10: 54,014,456 V288I possibly damaging Het
Map2 T G 1: 66,425,478 S1676A probably damaging Het
Mbl1 G T 14: 41,153,615 V9F unknown Het
Mrgprb8 T A 7: 48,389,303 C241S probably benign Het
Mrpl2 T C 17: 46,649,086 L227P probably damaging Het
Mthfd1 T A 12: 76,288,911 V253E probably damaging Het
Mthfd1 A G 12: 76,303,680 H464R probably damaging Het
Mug2 T A 6: 122,047,439 M490K probably benign Het
Naip6 C T 13: 100,300,600 A472T probably benign Het
Notch1 A G 2: 26,469,899 V1268A probably damaging Het
Olfr1415 A T 1: 92,491,542 I71N possibly damaging Het
Olfr876 C A 9: 37,804,881 probably null Het
Pgm2 A T 4: 99,978,954 I412F probably damaging Het
Plaur A T 7: 24,465,203 Q44L possibly damaging Het
Ppara T C 15: 85,787,233 Y112H probably damaging Het
Ppm1h G A 10: 122,920,739 V430M probably damaging Het
Prpf40a T C 2: 53,157,915 M197V probably benign Het
Prph A G 15: 99,056,832 T35A probably benign Het
Prrc2c C T 1: 162,682,516 G780S probably damaging Het
Ptchd3 T A 11: 121,831,082 N260K probably benign Het
Ptprz1 A G 6: 23,002,471 D1520G probably benign Het
Samd9l T A 6: 3,376,686 I192L probably benign Het
Slc39a10 T C 1: 46,835,833 D103G probably damaging Het
Smndc1 G A 19: 53,383,632 T117M probably benign Het
Tesk2 A G 4: 116,792,170 D159G probably damaging Het
Tmem2 G A 19: 21,844,822 G1194S probably benign Het
Tns2 C T 15: 102,108,934 R281C probably damaging Het
Vmn2r108 A T 17: 20,462,382 N853K probably benign Het
Wdfy3 C T 5: 101,872,965 R2491Q possibly damaging Het
Other mutations in Lgals4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01583:Lgals4 APN 7 28841548 missense probably damaging 0.98
IGL03069:Lgals4 APN 7 28840918 missense probably benign 0.00
IGL03180:Lgals4 APN 7 28837628 missense probably damaging 1.00
R0131:Lgals4 UTSW 7 28834232 unclassified probably null
R4181:Lgals4 UTSW 7 28836012 missense possibly damaging 0.87
R4981:Lgals4 UTSW 7 28841276 missense probably damaging 0.98
R6425:Lgals4 UTSW 7 28834460 nonsense probably null
R6431:Lgals4 UTSW 7 28840692
R7335:Lgals4 UTSW 7 28841146 missense probably benign 0.01
R7359:Lgals4 UTSW 7 28841299 missense probably benign 0.30
R7522:Lgals4 UTSW 7 28837692 missense possibly damaging 0.73
Predicted Primers PCR Primer

Sequencing Primer
Posted On2018-02-27