Incidental Mutation 'R6208:Tcea3'
ID503253
Institutional Source Beutler Lab
Gene Symbol Tcea3
Ensembl Gene ENSMUSG00000001604
Gene Nametranscription elongation factor A (SII), 3
SynonymsS-II
MMRRC Submission 044342-MU
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.374) question?
Stock #R6208 (G1)
Quality Score225.009
Status Not validated
Chromosome4
Chromosomal Location136247729-136274898 bp(+) (GRCm38)
Type of Mutationstart codon destroyed
DNA Base Change (assembly) A to T at 136248049 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Leucine at position 1 (M1L)
Ref Sequence ENSEMBL: ENSMUSP00000122718 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047526] [ENSMUST00000102533] [ENSMUST00000143942]
Predicted Effect probably benign
Transcript: ENSMUST00000047526
SMART Domains Protein: ENSMUSP00000041899
Gene: ENSMUSG00000036995

DomainStartEndE-ValueType
low complexity region 22 29 N/A INTRINSIC
Pfam:BAR_3 32 264 5.5e-20 PFAM
PH 303 396 5.61e-17 SMART
ArfGap 425 547 8.33e-31 SMART
ANK 584 616 4.86e1 SMART
ANK 620 649 3.06e-5 SMART
low complexity region 794 806 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000102533
AA Change: M1L

PolyPhen 2 Score 0.705 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000099592
Gene: ENSMUSG00000001604
AA Change: M1L

DomainStartEndE-ValueType
TFS2N 7 81 1.43e-29 SMART
low complexity region 86 100 N/A INTRINSIC
low complexity region 124 144 N/A INTRINSIC
low complexity region 157 168 N/A INTRINSIC
TFS2M 184 285 1.05e-52 SMART
ZnF_C2C2 307 346 6.87e-18 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136812
Predicted Effect probably damaging
Transcript: ENSMUST00000143942
AA Change: M1L

PolyPhen 2 Score 0.965 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000122718
Gene: ENSMUSG00000001604
AA Change: M1L

DomainStartEndE-ValueType
TFS2N 7 81 1.41e-28 SMART
low complexity region 110 124 N/A INTRINSIC
low complexity region 148 168 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency 98% (57/58)
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Actl6a A T 3: 32,711,894 I18F probably benign Het
Apol11a C T 15: 77,517,041 R243C probably damaging Het
Asap3 A G 4: 136,241,197 M687V probably benign Het
Axdnd1 C T 1: 156,392,856 probably benign Het
Baz2b A G 2: 59,924,806 F1026S probably damaging Het
Bsg T C 10: 79,708,838 L70P probably damaging Het
Col10a1 A G 10: 34,394,586 N185D possibly damaging Het
Col6a2 T A 10: 76,615,057 N50I possibly damaging Het
Cux2 G A 5: 121,860,822 P1352S possibly damaging Het
Defa25 A G 8: 21,085,181 probably null Het
Emc1 G T 4: 139,354,271 R70L probably damaging Het
Fat1 T C 8: 45,027,613 F3028S probably damaging Het
Fhit T C 14: 9,573,435 E205G probably benign Het
Gaa C A 11: 119,281,171 A700D probably benign Het
Gm20830 T G Y: 6,916,792 E109A probably benign Homo
Grm1 A T 10: 10,719,946 F646Y probably damaging Het
Hp1bp3 A G 4: 138,217,170 probably benign Het
Lce1d G A 3: 92,686,005 P34S unknown Het
Lpar1 G A 4: 58,504,630 Q13* probably null Het
Lrrc61 C T 6: 48,568,905 R221* probably null Het
Map2 A G 1: 66,431,590 N328D probably damaging Het
Mndal T A 1: 173,857,422 D527V possibly damaging Het
Mycbp2 T G 14: 103,295,228 N430T probably benign Het
Myo1e A G 9: 70,376,605 Y861C probably damaging Het
Nav2 A G 7: 49,564,103 T1622A probably damaging Het
Nom1 A T 5: 29,449,619 H773L possibly damaging Het
Npc2 G T 12: 84,757,145 P144Q probably damaging Het
Npnt A G 3: 132,950,013 probably benign Het
Nxpe4 A T 9: 48,393,378 Y255F probably benign Het
Obscn G A 11: 59,067,648 A3769V possibly damaging Het
Optc T C 1: 133,904,999 D121G probably damaging Het
Pard6a T C 8: 105,702,234 F26L probably damaging Het
Pcdhga4 T A 18: 37,686,709 I437N probably damaging Het
Phf12 G T 11: 78,023,591 V71F probably damaging Het
Phf21b T A 15: 84,795,116 S282C probably damaging Het
Pou5f1 T C 17: 35,510,460 F323S possibly damaging Het
Psmd5 A T 2: 34,867,011 I67N probably damaging Het
Pyroxd1 A G 6: 142,357,456 K273R probably benign Het
Rnd2 C T 11: 101,468,999 L57F probably damaging Het
Rpusd1 A T 17: 25,730,378 H174L probably damaging Het
Ryr2 T C 13: 11,895,220 K94R probably benign Het
Scn2b A G 9: 45,118,030 R3G probably benign Het
Sf3b2 A T 19: 5,275,098 M782K possibly damaging Het
Skint7 A G 4: 111,984,876 probably null Het
Slc43a1 A G 2: 84,856,840 I319V possibly damaging Het
Snupn T A 9: 56,982,963 M356K probably damaging Het
Spata31d1a C A 13: 59,700,564 R1250M probably damaging Het
Sprr2h T C 3: 92,386,909 V21A unknown Het
Srpr A G 9: 35,215,995 T614A possibly damaging Het
Stk36 A T 1: 74,611,432 Q327L probably benign Het
Syne3 A G 12: 104,943,363 I738T probably benign Het
Tead2 G T 7: 45,218,102 R85L probably damaging Het
Thap7 T C 16: 17,528,436 N228D possibly damaging Het
Trip11 T A 12: 101,898,895 E173V probably damaging Het
Ttc38 T A 15: 85,841,497 M187K possibly damaging Het
Vmn1r193 T A 13: 22,218,968 T285S possibly damaging Het
Vmn2r106 T C 17: 20,268,329 T603A probably damaging Het
Vps39 A T 2: 120,333,416 M355K probably damaging Het
Wnt5b G T 6: 119,446,512 L51I probably damaging Het
Xxylt1 A G 16: 31,007,808 Y230H probably benign Het
Other mutations in Tcea3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00588:Tcea3 APN 4 136273692 missense probably damaging 1.00
IGL01647:Tcea3 APN 4 136274776 splice site probably benign
IGL02153:Tcea3 APN 4 136273634 splice site probably benign
IGL02832:Tcea3 APN 4 136268113 missense probably damaging 1.00
IGL02951:Tcea3 APN 4 136257988 critical splice donor site probably null
R0281:Tcea3 UTSW 4 136271366 missense probably damaging 1.00
R0646:Tcea3 UTSW 4 136248071 nonsense probably null
R3937:Tcea3 UTSW 4 136255143 splice site probably benign
R4944:Tcea3 UTSW 4 136268093 missense probably damaging 1.00
R5028:Tcea3 UTSW 4 136257935 missense possibly damaging 0.87
R5169:Tcea3 UTSW 4 136264870 critical splice acceptor site probably null
R5245:Tcea3 UTSW 4 136264502 missense probably benign 0.01
R5511:Tcea3 UTSW 4 136271372 missense probably damaging 1.00
R5730:Tcea3 UTSW 4 136264893 missense probably benign 0.00
R7106:Tcea3 UTSW 4 136271368 missense probably damaging 1.00
Predicted Primers
Posted On2018-02-27