Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01110:Sardh'

50541

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Sardh

Ensembl Gene

ENSMUSG00000009614

Gene Name

sarcosine dehydrogenase

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.109) question?

Stock #

IGL01110

Quality Score

Status

Chromosome

Chromosomal Location

27078405-27138344 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 27105125 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 666 (Q666L)

Ref Sequence

ENSEMBL: ENSMUSP00000099950 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102886]

AlphaFold

Q99LB7

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000091224

Predicted Effect

probably benign
Transcript: ENSMUST00000102886
AA Change: Q666L

PolyPhen 2 Score 0.073 (Sensitivity: 0.93; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000099950
Gene: ENSMUSG00000009614
AA Change: Q666L

Domain	Start	End	E-Value	Type
Pfam:DAO	69	428	1.7e-63	PFAM
Pfam:FAO_M	431	486	9.2e-22	PFAM
Pfam:GCV_T	489	799	3.1e-64	PFAM
Pfam:GCV_T_C	807	904	4.7e-16	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127805

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144448

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147089

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170435

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme localized to the mitochondrial matrix which catalyzes the oxidative demethylation of sarcosine. This enzyme is distinct from another mitochondrial matrix enzyme, dimethylglycine dehydrogenase, which catalyzes a reaction resulting in the formation of sarcosine. Mutations in this gene are associated with sarcosinemia. Alternatively spliced transcript variants have been described. [provided by RefSeq, Oct 2008]

Allele List at MGI

Other mutations in this stock

Total: 23 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Bbs1	G	A	19: 4,942,953 (GRCm39)	S479L	possibly damaging	Het
Capn6	G	T	X: 142,590,246 (GRCm39)	P385H	probably damaging	Het
Cavin1	C	A	11: 100,861,300 (GRCm39)		probably benign	Het
Cdh9	A	G	15: 16,856,012 (GRCm39)	D684G	possibly damaging	Het
Dlgap5	A	G	14: 47,631,783 (GRCm39)		probably benign	Het
Doc2g	A	G	19: 4,056,577 (GRCm39)	E321G	probably damaging	Het
Eef1akmt1	A	C	14: 57,787,247 (GRCm39)	F210V	probably damaging	Het
Eya1	A	G	1: 14,353,354 (GRCm39)	S65P	probably damaging	Het
Gpx8	C	T	13: 113,182,218 (GRCm39)	V72I	probably benign	Het
Gria1	A	G	11: 57,180,207 (GRCm39)	E650G	probably damaging	Het
Hic1	A	T	11: 75,056,345 (GRCm39)	L848Q	possibly damaging	Het
Mmp1b	C	T	9: 7,384,921 (GRCm39)	D243N	probably benign	Het
Mov10l1	G	T	15: 88,905,460 (GRCm39)	V872L	probably benign	Het
Or8g50	T	C	9: 39,648,693 (GRCm39)	V194A	probably benign	Het
Or8h9	C	T	2: 86,789,265 (GRCm39)	C179Y	possibly damaging	Het
Otof	A	G	5: 30,619,069 (GRCm39)	F25S	probably damaging	Het
Patj	A	C	4: 98,301,261 (GRCm39)	N182T	probably damaging	Het
Pik3r6	G	A	11: 68,419,652 (GRCm39)		probably null	Het
Ppil6	G	A	10: 41,374,406 (GRCm39)	V96I	probably benign	Het
Tasp1	A	G	2: 139,819,538 (GRCm39)	S222P	probably damaging	Het
Tln2	G	T	9: 67,157,864 (GRCm39)	C1158*	probably null	Het
Zfp707	T	A	15: 75,847,044 (GRCm39)	C292S	probably damaging	Het
Zfp956	A	G	6: 47,940,346 (GRCm39)	E235G	probably benign	Het

Other mutations in Sardh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01686:Sardh	APN	2	27,079,625 (GRCm39)	missense	probably damaging	1.00
IGL01868:Sardh	APN	2	27,117,159 (GRCm39)	missense	probably benign	0.35
IGL02167:Sardh	APN	2	27,081,987 (GRCm39)	missense	probably damaging	0.98
IGL02272:Sardh	APN	2	27,115,003 (GRCm39)	missense	probably benign	0.00
IGL02870:Sardh	APN	2	27,125,503 (GRCm39)	missense	possibly damaging	0.93
IGL03117:Sardh	APN	2	27,129,458 (GRCm39)	missense	probably damaging	1.00
PIT4305001:Sardh	UTSW	2	27,118,326 (GRCm39)	missense	probably damaging	1.00
PIT4791001:Sardh	UTSW	2	27,087,660 (GRCm39)	missense	probably damaging	1.00
R0265:Sardh	UTSW	2	27,117,078 (GRCm39)	splice site	probably benign
R0781:Sardh	UTSW	2	27,081,931 (GRCm39)	missense	possibly damaging	0.82
R1110:Sardh	UTSW	2	27,081,931 (GRCm39)	missense	possibly damaging	0.82
R1242:Sardh	UTSW	2	27,125,575 (GRCm39)	missense	probably damaging	1.00
R1404:Sardh	UTSW	2	27,129,473 (GRCm39)	missense	probably damaging	1.00
R1404:Sardh	UTSW	2	27,129,473 (GRCm39)	missense	probably damaging	1.00
R1514:Sardh	UTSW	2	27,087,702 (GRCm39)	missense	possibly damaging	0.95
R1565:Sardh	UTSW	2	27,132,731 (GRCm39)	missense	probably damaging	1.00
R1832:Sardh	UTSW	2	27,125,581 (GRCm39)	missense	possibly damaging	0.95
R1836:Sardh	UTSW	2	27,105,194 (GRCm39)	missense	possibly damaging	0.65
R1997:Sardh	UTSW	2	27,134,409 (GRCm39)	missense	probably damaging	0.97
R2006:Sardh	UTSW	2	27,118,351 (GRCm39)	missense	probably damaging	1.00
R2046:Sardh	UTSW	2	27,105,094 (GRCm39)	missense	possibly damaging	0.95
R2242:Sardh	UTSW	2	27,125,527 (GRCm39)	missense	possibly damaging	0.93
R2897:Sardh	UTSW	2	27,079,559 (GRCm39)	missense	probably benign	0.00
R4332:Sardh	UTSW	2	27,105,126 (GRCm39)	missense	possibly damaging	0.85
R4807:Sardh	UTSW	2	27,079,539 (GRCm39)	missense	probably benign	0.00
R4841:Sardh	UTSW	2	27,081,967 (GRCm39)	missense	probably benign	0.09
R4842:Sardh	UTSW	2	27,081,967 (GRCm39)	missense	probably benign	0.09
R4856:Sardh	UTSW	2	27,134,489 (GRCm39)	missense	probably benign	0.02
R4936:Sardh	UTSW	2	27,118,253 (GRCm39)	splice site	probably null
R5089:Sardh	UTSW	2	27,129,625 (GRCm39)	critical splice donor site	probably null
R5110:Sardh	UTSW	2	27,079,559 (GRCm39)	missense	probably benign	0.00
R5257:Sardh	UTSW	2	27,134,271 (GRCm39)	missense	probably damaging	0.98
R5406:Sardh	UTSW	2	27,101,096 (GRCm39)	missense	possibly damaging	0.72
R5450:Sardh	UTSW	2	27,129,710 (GRCm39)	missense	possibly damaging	0.65
R5594:Sardh	UTSW	2	27,110,735 (GRCm39)	missense	probably damaging	1.00
R5870:Sardh	UTSW	2	27,110,653 (GRCm39)	critical splice donor site	probably null
R6014:Sardh	UTSW	2	27,087,540 (GRCm39)	critical splice donor site	probably null
R6021:Sardh	UTSW	2	27,079,655 (GRCm39)	missense	probably benign	0.44
R6470:Sardh	UTSW	2	27,134,384 (GRCm39)	missense	probably damaging	1.00
R6577:Sardh	UTSW	2	27,108,867 (GRCm39)	missense	possibly damaging	0.95
R6750:Sardh	UTSW	2	27,118,269 (GRCm39)	missense	probably benign	0.04
R7035:Sardh	UTSW	2	27,120,854 (GRCm39)	missense	probably damaging	1.00
R7162:Sardh	UTSW	2	27,087,702 (GRCm39)	missense	possibly damaging	0.95
R7256:Sardh	UTSW	2	27,108,824 (GRCm39)	missense	probably benign
R7692:Sardh	UTSW	2	27,087,651 (GRCm39)	missense	probably benign	0.01
R7709:Sardh	UTSW	2	27,131,529 (GRCm39)	missense	possibly damaging	0.62
R7884:Sardh	UTSW	2	27,129,383 (GRCm39)	missense	probably damaging	0.99
R8028:Sardh	UTSW	2	27,120,467 (GRCm39)	missense	probably damaging	1.00
R8095:Sardh	UTSW	2	27,132,730 (GRCm39)	missense	probably damaging	1.00
R8120:Sardh	UTSW	2	27,108,863 (GRCm39)	missense	possibly damaging	0.62
R8302:Sardh	UTSW	2	27,105,122 (GRCm39)	missense	probably benign	0.03
R8323:Sardh	UTSW	2	27,125,576 (GRCm39)	missense	probably damaging	1.00
R8535:Sardh	UTSW	2	27,129,657 (GRCm39)	missense	probably damaging	1.00
R8704:Sardh	UTSW	2	27,120,477 (GRCm39)	missense	possibly damaging	0.50
R8781:Sardh	UTSW	2	27,086,715 (GRCm39)	missense	possibly damaging	0.95
R8858:Sardh	UTSW	2	27,118,302 (GRCm39)	missense	probably null	1.00
R9265:Sardh	UTSW	2	27,105,065 (GRCm39)	missense	probably damaging	0.99
R9337:Sardh	UTSW	2	27,086,678 (GRCm39)	missense	probably benign	0.11
R9342:Sardh	UTSW	2	27,120,869 (GRCm39)	missense	possibly damaging	0.95
R9539:Sardh	UTSW	2	27,134,298 (GRCm39)	missense	probably damaging	0.99
R9600:Sardh	UTSW	2	27,120,513 (GRCm39)	missense	probably benign
R9714:Sardh	UTSW	2	27,079,641 (GRCm39)	missense	possibly damaging	0.64
X0011:Sardh	UTSW	2	27,132,758 (GRCm39)	missense	probably damaging	1.00
Z1176:Sardh	UTSW	2	27,108,902 (GRCm39)	missense	possibly damaging	0.52
Z1176:Sardh	UTSW	2	27,108,846 (GRCm39)	missense	possibly damaging	0.88
Z1176:Sardh	UTSW	2	27,086,685 (GRCm39)	missense	probably benign	0.08
Z1177:Sardh	UTSW	2	27,125,525 (GRCm39)	missense	probably damaging	1.00

Posted On

2013-06-21