Incidental Mutation 'R6247:Ptprd'
ID |
505671 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Ptprd
|
Ensembl Gene |
ENSMUSG00000028399 |
Gene Name |
protein tyrosine phosphatase receptor type D |
Synonyms |
1110002J03Rik, B230219D21Rik, 3000002J10Rik |
MMRRC Submission |
044366-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R6247 (G1)
|
Quality Score |
225.009 |
Status
|
Not validated
|
Chromosome |
4 |
Chromosomal Location |
75859475-78130198 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 75984528 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glutamic Acid
at position 780
(D780E)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000134229
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000050757]
[ENSMUST00000098005]
[ENSMUST00000102834]
[ENSMUST00000107289]
[ENSMUST00000173376]
[ENSMUST00000174023]
[ENSMUST00000174180]
[ENSMUST00000174531]
[ENSMUST00000174831]
[ENSMUST00000212365]
|
AlphaFold |
Q64487 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000050757
AA Change: D776E
PolyPhen 2
Score 0.028 (Sensitivity: 0.95; Specificity: 0.81)
|
SMART Domains |
Protein: ENSMUSP00000058466 Gene: ENSMUSG00000028399 AA Change: D776E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
208 |
1.38e-15 |
SMART |
IGc2
|
238 |
299 |
8.13e-4 |
SMART |
FN3
|
313 |
392 |
7.92e-14 |
SMART |
FN3
|
408 |
491 |
5.73e-11 |
SMART |
IG_like
|
499 |
593 |
8.34e1 |
SMART |
FN3
|
506 |
584 |
9.1e-14 |
SMART |
FN3
|
597 |
674 |
1.21e0 |
SMART |
transmembrane domain
|
847 |
869 |
N/A |
INTRINSIC |
low complexity region
|
870 |
882 |
N/A |
INTRINSIC |
PTPc
|
949 |
1207 |
6.38e-134 |
SMART |
PTPc
|
1236 |
1498 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000098005
AA Change: D786E
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000095614 Gene: ENSMUSG00000028399 AA Change: D786E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
214 |
8.5e-16 |
SMART |
low complexity region
|
225 |
237 |
N/A |
INTRINSIC |
IGc2
|
248 |
309 |
8.13e-4 |
SMART |
FN3
|
323 |
402 |
7.92e-14 |
SMART |
FN3
|
418 |
501 |
5.73e-11 |
SMART |
IG_like
|
509 |
603 |
8.34e1 |
SMART |
FN3
|
516 |
594 |
9.1e-14 |
SMART |
FN3
|
607 |
684 |
1.21e0 |
SMART |
transmembrane domain
|
857 |
879 |
N/A |
INTRINSIC |
low complexity region
|
886 |
897 |
N/A |
INTRINSIC |
PTPc
|
950 |
1208 |
6.38e-134 |
SMART |
PTPc
|
1237 |
1499 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000102834
AA Change: D539E
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000099898 Gene: ENSMUSG00000028399 AA Change: D539E
Domain | Start | End | E-Value | Type |
IGc2
|
1 |
62 |
8.13e-4 |
SMART |
FN3
|
76 |
155 |
7.92e-14 |
SMART |
FN3
|
171 |
254 |
5.73e-11 |
SMART |
IG_like
|
262 |
356 |
8.34e1 |
SMART |
FN3
|
269 |
347 |
9.1e-14 |
SMART |
FN3
|
360 |
437 |
1.21e0 |
SMART |
transmembrane domain
|
610 |
632 |
N/A |
INTRINSIC |
low complexity region
|
633 |
645 |
N/A |
INTRINSIC |
PTPc
|
698 |
956 |
6.38e-134 |
SMART |
PTPc
|
985 |
1247 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000107289
AA Change: D1197E
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000102910 Gene: ENSMUSG00000028399 AA Change: D1197E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
214 |
8.5e-16 |
SMART |
low complexity region
|
225 |
237 |
N/A |
INTRINSIC |
IGc2
|
248 |
309 |
8.13e-4 |
SMART |
FN3
|
323 |
402 |
7.92e-14 |
SMART |
FN3
|
418 |
501 |
5.73e-11 |
SMART |
IG_like
|
509 |
603 |
8.34e1 |
SMART |
FN3
|
516 |
594 |
9.1e-14 |
SMART |
FN3
|
609 |
696 |
2.72e-12 |
SMART |
FN3
|
712 |
809 |
2.87e-11 |
SMART |
FN3
|
824 |
904 |
4.96e-6 |
SMART |
FN3
|
919 |
1003 |
4.12e-12 |
SMART |
FN3
|
1018 |
1095 |
1.95e0 |
SMART |
transmembrane domain
|
1268 |
1290 |
N/A |
INTRINSIC |
low complexity region
|
1291 |
1303 |
N/A |
INTRINSIC |
PTPc
|
1356 |
1614 |
6.38e-134 |
SMART |
PTPc
|
1643 |
1905 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000173376
AA Change: D793E
PolyPhen 2
Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
|
SMART Domains |
Protein: ENSMUSP00000133468 Gene: ENSMUSG00000028399 AA Change: D793E
Domain | Start | End | E-Value | Type |
IGc2
|
43 |
112 |
8.57e-12 |
SMART |
IGc2
|
145 |
221 |
8.5e-16 |
SMART |
low complexity region
|
232 |
244 |
N/A |
INTRINSIC |
IGc2
|
255 |
316 |
8.13e-4 |
SMART |
FN3
|
330 |
409 |
7.92e-14 |
SMART |
FN3
|
425 |
508 |
5.73e-11 |
SMART |
IG_like
|
516 |
610 |
8.34e1 |
SMART |
FN3
|
523 |
601 |
9.1e-14 |
SMART |
FN3
|
614 |
691 |
1.21e0 |
SMART |
transmembrane domain
|
864 |
886 |
N/A |
INTRINSIC |
low complexity region
|
887 |
899 |
N/A |
INTRINSIC |
PTPc
|
952 |
1210 |
6.38e-134 |
SMART |
PTPc
|
1239 |
1501 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174023
AA Change: D783E
PolyPhen 2
Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000133562 Gene: ENSMUSG00000028399 AA Change: D783E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
211 |
4.88e-16 |
SMART |
low complexity region
|
222 |
234 |
N/A |
INTRINSIC |
IGc2
|
245 |
306 |
8.13e-4 |
SMART |
FN3
|
320 |
399 |
7.92e-14 |
SMART |
FN3
|
415 |
498 |
5.73e-11 |
SMART |
IG_like
|
506 |
600 |
8.34e1 |
SMART |
FN3
|
513 |
591 |
9.1e-14 |
SMART |
FN3
|
604 |
681 |
1.21e0 |
SMART |
transmembrane domain
|
853 |
875 |
N/A |
INTRINSIC |
low complexity region
|
882 |
893 |
N/A |
INTRINSIC |
PTPc
|
946 |
1204 |
6.38e-134 |
SMART |
PTPc
|
1233 |
1495 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174180
AA Change: D1175E
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000133973 Gene: ENSMUSG00000028399 AA Change: D1175E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
205 |
2.09e-15 |
SMART |
IGc2
|
235 |
296 |
8.13e-4 |
SMART |
FN3
|
310 |
389 |
7.92e-14 |
SMART |
FN3
|
405 |
488 |
5.73e-11 |
SMART |
IG_like
|
496 |
590 |
8.34e1 |
SMART |
FN3
|
503 |
581 |
9.1e-14 |
SMART |
FN3
|
596 |
683 |
2.72e-12 |
SMART |
FN3
|
699 |
787 |
6.15e-11 |
SMART |
FN3
|
802 |
882 |
4.96e-6 |
SMART |
FN3
|
897 |
981 |
4.12e-12 |
SMART |
FN3
|
996 |
1073 |
1.95e0 |
SMART |
transmembrane domain
|
1246 |
1268 |
N/A |
INTRINSIC |
low complexity region
|
1269 |
1281 |
N/A |
INTRINSIC |
PTPc
|
1334 |
1592 |
6.38e-134 |
SMART |
PTPc
|
1621 |
1883 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174531
AA Change: D780E
PolyPhen 2
Score 0.062 (Sensitivity: 0.94; Specificity: 0.84)
|
SMART Domains |
Protein: ENSMUSP00000134229 Gene: ENSMUSG00000028399 AA Change: D780E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
208 |
1.38e-15 |
SMART |
low complexity region
|
219 |
231 |
N/A |
INTRINSIC |
IGc2
|
242 |
303 |
8.13e-4 |
SMART |
FN3
|
317 |
396 |
7.92e-14 |
SMART |
FN3
|
412 |
495 |
5.73e-11 |
SMART |
IG_like
|
503 |
597 |
8.34e1 |
SMART |
FN3
|
510 |
588 |
9.1e-14 |
SMART |
FN3
|
601 |
678 |
1.21e0 |
SMART |
transmembrane domain
|
851 |
873 |
N/A |
INTRINSIC |
low complexity region
|
874 |
886 |
N/A |
INTRINSIC |
PTPc
|
939 |
1197 |
6.38e-134 |
SMART |
PTPc
|
1226 |
1488 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000174831
AA Change: D786E
PolyPhen 2
Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)
|
SMART Domains |
Protein: ENSMUSP00000133328 Gene: ENSMUSG00000028399 AA Change: D786E
Domain | Start | End | E-Value | Type |
IGc2
|
36 |
105 |
8.57e-12 |
SMART |
IGc2
|
138 |
214 |
8.5e-16 |
SMART |
low complexity region
|
225 |
237 |
N/A |
INTRINSIC |
IGc2
|
248 |
309 |
8.13e-4 |
SMART |
FN3
|
323 |
402 |
7.92e-14 |
SMART |
FN3
|
418 |
501 |
5.73e-11 |
SMART |
IG_like
|
509 |
603 |
8.34e1 |
SMART |
FN3
|
516 |
594 |
9.1e-14 |
SMART |
FN3
|
607 |
684 |
1.21e0 |
SMART |
transmembrane domain
|
856 |
878 |
N/A |
INTRINSIC |
low complexity region
|
885 |
896 |
N/A |
INTRINSIC |
PTPc
|
949 |
1207 |
6.38e-134 |
SMART |
PTPc
|
1236 |
1498 |
9.17e-135 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000212365
AA Change: D106E
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.7%
- 10x: 98.4%
- 20x: 95.4%
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: Homozygotes for a targeted null mutation exhibit impaired learning of spatial tasks, enhanced long-term potentiation at hippocampal synapses, and high mortality associated with reduced food intake. [provided by MGI curators]
|
Allele List at MGI |
All alleles(9) : Targeted(4) Gene trapped(5)
|
Other mutations in this stock |
Total: 86 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4933427D14Rik |
T |
C |
11: 72,049,768 (GRCm39) |
D871G |
probably benign |
Het |
A4galt |
G |
T |
15: 83,112,020 (GRCm39) |
H254Q |
probably damaging |
Het |
AA986860 |
C |
A |
1: 130,670,780 (GRCm39) |
T334K |
possibly damaging |
Het |
Abca13 |
T |
C |
11: 9,353,874 (GRCm39) |
I3732T |
probably benign |
Het |
Abcf1 |
C |
T |
17: 36,271,956 (GRCm39) |
D353N |
probably damaging |
Het |
Adss1 |
A |
G |
12: 112,594,790 (GRCm39) |
H83R |
probably damaging |
Het |
Amer2 |
C |
A |
14: 60,616,321 (GRCm39) |
A172E |
probably damaging |
Het |
Ankhd1 |
A |
G |
18: 36,787,199 (GRCm39) |
T2300A |
probably benign |
Het |
Ano5 |
G |
A |
7: 51,215,879 (GRCm39) |
|
probably null |
Het |
Apob |
G |
A |
12: 8,051,801 (GRCm39) |
G1109D |
probably damaging |
Het |
Arhgef26 |
A |
T |
3: 62,288,381 (GRCm39) |
N484Y |
probably damaging |
Het |
C6 |
A |
G |
15: 4,793,023 (GRCm39) |
D376G |
probably damaging |
Het |
Caml |
T |
C |
13: 55,772,986 (GRCm39) |
|
probably null |
Het |
Capn12 |
T |
C |
7: 28,588,077 (GRCm39) |
L473S |
probably benign |
Het |
Cdk6 |
G |
A |
5: 3,394,553 (GRCm39) |
|
probably null |
Het |
Cers5 |
A |
T |
15: 99,643,805 (GRCm39) |
C153S |
probably benign |
Het |
Cfap206 |
T |
C |
4: 34,692,530 (GRCm39) |
M499V |
probably benign |
Het |
Chd6 |
A |
G |
2: 160,791,968 (GRCm39) |
M2463T |
probably damaging |
Het |
Chn1 |
T |
C |
2: 73,537,350 (GRCm39) |
E58G |
possibly damaging |
Het |
Clec4a1 |
T |
C |
6: 122,905,001 (GRCm39) |
V100A |
probably benign |
Het |
Col7a1 |
G |
C |
9: 108,810,130 (GRCm39) |
|
probably benign |
Het |
Csmd1 |
A |
G |
8: 16,246,249 (GRCm39) |
V1050A |
possibly damaging |
Het |
Dab1 |
C |
T |
4: 104,588,948 (GRCm39) |
A524V |
probably benign |
Het |
Dennd5a |
A |
T |
7: 109,497,889 (GRCm39) |
C1044S |
probably damaging |
Het |
Dnah7b |
A |
G |
1: 46,265,048 (GRCm39) |
T2181A |
probably benign |
Het |
Dnai1 |
T |
C |
4: 41,605,775 (GRCm39) |
V255A |
probably benign |
Het |
Dync2h1 |
A |
G |
9: 7,135,078 (GRCm39) |
C1518R |
probably damaging |
Het |
Dysf |
T |
C |
6: 84,043,981 (GRCm39) |
V273A |
probably damaging |
Het |
Eif1 |
C |
T |
11: 100,211,223 (GRCm39) |
|
probably benign |
Het |
Eml3 |
T |
C |
19: 8,908,313 (GRCm39) |
I58T |
probably benign |
Het |
Fam171b |
T |
A |
2: 83,709,552 (GRCm39) |
I408N |
probably damaging |
Het |
Fchsd2 |
A |
G |
7: 100,902,747 (GRCm39) |
E351G |
probably benign |
Het |
Focad |
G |
A |
4: 88,325,377 (GRCm39) |
A81T |
possibly damaging |
Het |
Fpr-rs4 |
G |
A |
17: 18,242,748 (GRCm39) |
V252I |
probably benign |
Het |
Fryl |
A |
G |
5: 73,222,824 (GRCm39) |
L1919P |
probably damaging |
Het |
Gm12185 |
C |
T |
11: 48,806,735 (GRCm39) |
R152H |
probably damaging |
Het |
Gm14410 |
C |
T |
2: 176,885,517 (GRCm39) |
G249E |
probably damaging |
Het |
Gm6685 |
A |
T |
11: 28,289,706 (GRCm39) |
S37T |
possibly damaging |
Het |
Greb1 |
G |
A |
12: 16,766,676 (GRCm39) |
P374L |
probably damaging |
Het |
Hdac4 |
A |
T |
1: 91,940,560 (GRCm39) |
|
probably null |
Het |
Hecw1 |
A |
T |
13: 14,409,010 (GRCm39) |
L1099* |
probably null |
Het |
Hivep1 |
T |
C |
13: 42,310,966 (GRCm39) |
S1069P |
probably benign |
Het |
Itgad |
T |
C |
7: 127,784,959 (GRCm39) |
I288T |
possibly damaging |
Het |
Kif9 |
A |
G |
9: 110,317,612 (GRCm39) |
M96V |
possibly damaging |
Het |
Kncn |
T |
A |
4: 115,741,987 (GRCm39) |
V18E |
probably damaging |
Het |
Lrrc74a |
G |
A |
12: 86,805,330 (GRCm39) |
G384D |
probably damaging |
Het |
Ltb4r2 |
T |
C |
14: 56,000,108 (GRCm39) |
V243A |
probably damaging |
Het |
Mtnr1b |
T |
A |
9: 15,774,082 (GRCm39) |
I326L |
probably benign |
Het |
Mylip |
C |
T |
13: 45,561,957 (GRCm39) |
T253I |
probably damaging |
Het |
Necap1 |
T |
A |
6: 122,857,611 (GRCm39) |
|
probably null |
Het |
Nedd4 |
C |
T |
9: 72,633,720 (GRCm39) |
P409S |
probably damaging |
Het |
Npat |
A |
T |
9: 53,456,538 (GRCm39) |
E36D |
probably damaging |
Het |
Ovch2 |
C |
T |
7: 107,384,648 (GRCm39) |
V490M |
probably damaging |
Het |
Pax9 |
T |
C |
12: 56,756,480 (GRCm39) |
S273P |
probably benign |
Het |
Plce1 |
A |
G |
19: 38,734,289 (GRCm39) |
E1563G |
probably damaging |
Het |
Podxl2 |
C |
A |
6: 88,826,299 (GRCm39) |
G336* |
probably null |
Het |
Prdm1 |
A |
G |
10: 44,322,782 (GRCm39) |
|
probably null |
Het |
Psme4 |
T |
C |
11: 30,803,245 (GRCm39) |
I29T |
possibly damaging |
Het |
Retsat |
T |
C |
6: 72,581,918 (GRCm39) |
M294T |
probably benign |
Het |
Robo2 |
A |
T |
16: 73,764,672 (GRCm39) |
V652D |
probably damaging |
Het |
Rptn |
C |
G |
3: 93,305,437 (GRCm39) |
H923Q |
possibly damaging |
Het |
Serpinb3d |
G |
T |
1: 107,010,490 (GRCm39) |
T66K |
probably benign |
Het |
Setd1b |
A |
T |
5: 123,296,461 (GRCm39) |
|
probably benign |
Het |
Slc7a10 |
G |
T |
7: 34,886,012 (GRCm39) |
A36S |
possibly damaging |
Het |
Sstr3 |
T |
A |
15: 78,423,788 (GRCm39) |
I320F |
probably damaging |
Het |
Syne1 |
G |
T |
10: 5,299,071 (GRCm39) |
A1005E |
probably damaging |
Het |
Syngap1 |
C |
A |
17: 27,181,931 (GRCm39) |
S975* |
probably null |
Het |
Tinagl1 |
C |
T |
4: 130,066,725 (GRCm39) |
C124Y |
probably null |
Het |
Tm9sf1 |
C |
T |
14: 55,873,827 (GRCm39) |
R557H |
probably damaging |
Het |
Tmed2 |
T |
A |
5: 124,685,055 (GRCm39) |
I68K |
possibly damaging |
Het |
Tmem104 |
A |
G |
11: 115,134,819 (GRCm39) |
T451A |
probably benign |
Het |
Tmem141 |
T |
C |
2: 25,511,693 (GRCm39) |
|
probably null |
Het |
Tmem184a |
C |
A |
5: 139,798,827 (GRCm39) |
V41L |
probably benign |
Het |
Tmem39b |
C |
T |
4: 129,580,584 (GRCm39) |
V303I |
possibly damaging |
Het |
Tsn |
T |
C |
1: 118,232,939 (GRCm39) |
I122V |
probably benign |
Het |
Ttc41 |
G |
T |
10: 86,612,527 (GRCm39) |
V1267L |
probably benign |
Het |
Uggt1 |
A |
T |
1: 36,202,309 (GRCm39) |
L1096Q |
probably damaging |
Het |
Usp50 |
A |
T |
2: 126,617,713 (GRCm39) |
I244N |
probably benign |
Het |
Vil1 |
A |
G |
1: 74,471,498 (GRCm39) |
S760G |
probably benign |
Het |
Wasf1 |
T |
A |
10: 40,813,741 (GRCm39) |
V541E |
unknown |
Het |
Zc3h13 |
G |
T |
14: 75,581,176 (GRCm39) |
S1721I |
probably benign |
Het |
Zfp180 |
G |
T |
7: 23,804,530 (GRCm39) |
K316N |
probably damaging |
Het |
Zfp582 |
T |
C |
7: 6,356,945 (GRCm39) |
C253R |
probably damaging |
Het |
Zfp709 |
TCGACG |
TCG |
8: 72,644,552 (GRCm39) |
|
probably benign |
Het |
Zfp759 |
A |
G |
13: 67,288,524 (GRCm39) |
T692A |
probably benign |
Het |
Zfyve26 |
A |
G |
12: 79,329,758 (GRCm39) |
V476A |
probably benign |
Het |
|
Other mutations in Ptprd |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00964:Ptprd
|
APN |
4 |
75,916,793 (GRCm39) |
nonsense |
probably null |
|
IGL01067:Ptprd
|
APN |
4 |
75,977,922 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01121:Ptprd
|
APN |
4 |
75,872,438 (GRCm39) |
splice site |
probably benign |
|
IGL01531:Ptprd
|
APN |
4 |
76,003,757 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01661:Ptprd
|
APN |
4 |
75,872,320 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01723:Ptprd
|
APN |
4 |
76,161,910 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01735:Ptprd
|
APN |
4 |
76,055,057 (GRCm39) |
splice site |
probably null |
|
IGL01810:Ptprd
|
APN |
4 |
76,058,744 (GRCm39) |
splice site |
probably benign |
|
IGL01834:Ptprd
|
APN |
4 |
76,046,832 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01835:Ptprd
|
APN |
4 |
76,165,058 (GRCm39) |
missense |
probably benign |
0.02 |
IGL01867:Ptprd
|
APN |
4 |
76,161,884 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02582:Ptprd
|
APN |
4 |
75,865,361 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02591:Ptprd
|
APN |
4 |
75,900,287 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02741:Ptprd
|
APN |
4 |
76,051,521 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02866:Ptprd
|
APN |
4 |
75,968,674 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02960:Ptprd
|
APN |
4 |
76,047,105 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03155:Ptprd
|
APN |
4 |
75,984,456 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL03230:Ptprd
|
APN |
4 |
75,968,654 (GRCm39) |
nonsense |
probably null |
|
IGL03343:Ptprd
|
APN |
4 |
75,977,966 (GRCm39) |
missense |
probably damaging |
1.00 |
unhurried
|
UTSW |
4 |
76,018,870 (GRCm39) |
nonsense |
probably null |
|
ANU22:Ptprd
|
UTSW |
4 |
76,018,693 (GRCm39) |
missense |
probably damaging |
0.99 |
F5493:Ptprd
|
UTSW |
4 |
76,002,645 (GRCm39) |
missense |
probably damaging |
1.00 |
P0033:Ptprd
|
UTSW |
4 |
76,047,091 (GRCm39) |
nonsense |
probably null |
|
R0044:Ptprd
|
UTSW |
4 |
76,004,566 (GRCm39) |
missense |
probably benign |
0.08 |
R0044:Ptprd
|
UTSW |
4 |
76,004,566 (GRCm39) |
missense |
probably benign |
0.08 |
R0076:Ptprd
|
UTSW |
4 |
75,865,276 (GRCm39) |
splice site |
probably benign |
|
R0137:Ptprd
|
UTSW |
4 |
76,055,140 (GRCm39) |
missense |
probably benign |
0.24 |
R0358:Ptprd
|
UTSW |
4 |
75,863,226 (GRCm39) |
missense |
probably damaging |
1.00 |
R0365:Ptprd
|
UTSW |
4 |
76,055,083 (GRCm39) |
missense |
probably damaging |
1.00 |
R0385:Ptprd
|
UTSW |
4 |
76,046,902 (GRCm39) |
missense |
probably damaging |
1.00 |
R0601:Ptprd
|
UTSW |
4 |
76,018,711 (GRCm39) |
missense |
probably benign |
|
R0646:Ptprd
|
UTSW |
4 |
76,002,640 (GRCm39) |
missense |
probably damaging |
0.99 |
R0667:Ptprd
|
UTSW |
4 |
75,875,583 (GRCm39) |
missense |
probably damaging |
1.00 |
R0707:Ptprd
|
UTSW |
4 |
75,875,476 (GRCm39) |
missense |
probably damaging |
1.00 |
R0734:Ptprd
|
UTSW |
4 |
76,058,834 (GRCm39) |
missense |
probably damaging |
1.00 |
R0827:Ptprd
|
UTSW |
4 |
76,047,152 (GRCm39) |
missense |
probably damaging |
0.98 |
R0932:Ptprd
|
UTSW |
4 |
76,055,122 (GRCm39) |
missense |
probably damaging |
1.00 |
R1069:Ptprd
|
UTSW |
4 |
76,018,870 (GRCm39) |
nonsense |
probably null |
|
R1069:Ptprd
|
UTSW |
4 |
75,916,724 (GRCm39) |
splice site |
probably benign |
|
R1086:Ptprd
|
UTSW |
4 |
76,051,495 (GRCm39) |
missense |
probably damaging |
1.00 |
R1439:Ptprd
|
UTSW |
4 |
75,984,437 (GRCm39) |
missense |
probably damaging |
1.00 |
R1440:Ptprd
|
UTSW |
4 |
76,002,789 (GRCm39) |
missense |
probably damaging |
0.98 |
R1688:Ptprd
|
UTSW |
4 |
75,900,921 (GRCm39) |
missense |
probably damaging |
1.00 |
R1858:Ptprd
|
UTSW |
4 |
75,865,384 (GRCm39) |
missense |
probably damaging |
1.00 |
R2001:Ptprd
|
UTSW |
4 |
75,872,359 (GRCm39) |
missense |
probably damaging |
1.00 |
R2020:Ptprd
|
UTSW |
4 |
76,051,398 (GRCm39) |
missense |
probably damaging |
1.00 |
R2023:Ptprd
|
UTSW |
4 |
75,875,341 (GRCm39) |
missense |
probably damaging |
1.00 |
R2413:Ptprd
|
UTSW |
4 |
76,051,437 (GRCm39) |
missense |
probably damaging |
1.00 |
R2510:Ptprd
|
UTSW |
4 |
76,004,248 (GRCm39) |
critical splice donor site |
probably null |
|
R2914:Ptprd
|
UTSW |
4 |
75,865,338 (GRCm39) |
missense |
probably damaging |
1.00 |
R2971:Ptprd
|
UTSW |
4 |
76,025,561 (GRCm39) |
missense |
probably benign |
0.10 |
R3051:Ptprd
|
UTSW |
4 |
76,018,867 (GRCm39) |
missense |
probably damaging |
1.00 |
R3433:Ptprd
|
UTSW |
4 |
76,004,248 (GRCm39) |
critical splice donor site |
probably null |
|
R3964:Ptprd
|
UTSW |
4 |
75,978,073 (GRCm39) |
splice site |
probably benign |
|
R4009:Ptprd
|
UTSW |
4 |
75,874,634 (GRCm39) |
missense |
possibly damaging |
0.94 |
R4394:Ptprd
|
UTSW |
4 |
76,046,922 (GRCm39) |
missense |
probably damaging |
1.00 |
R4420:Ptprd
|
UTSW |
4 |
75,957,614 (GRCm39) |
missense |
possibly damaging |
0.92 |
R4424:Ptprd
|
UTSW |
4 |
76,021,200 (GRCm39) |
missense |
probably benign |
0.22 |
R4575:Ptprd
|
UTSW |
4 |
76,162,023 (GRCm39) |
missense |
possibly damaging |
0.55 |
R4578:Ptprd
|
UTSW |
4 |
76,162,023 (GRCm39) |
missense |
possibly damaging |
0.55 |
R4715:Ptprd
|
UTSW |
4 |
76,025,570 (GRCm39) |
missense |
probably benign |
0.03 |
R4782:Ptprd
|
UTSW |
4 |
76,009,769 (GRCm39) |
missense |
probably benign |
0.01 |
R4785:Ptprd
|
UTSW |
4 |
76,058,790 (GRCm39) |
missense |
probably benign |
0.05 |
R4799:Ptprd
|
UTSW |
4 |
76,009,769 (GRCm39) |
missense |
probably benign |
0.01 |
R4944:Ptprd
|
UTSW |
4 |
76,047,136 (GRCm39) |
missense |
probably damaging |
1.00 |
R4950:Ptprd
|
UTSW |
4 |
76,058,752 (GRCm39) |
splice site |
probably null |
|
R4969:Ptprd
|
UTSW |
4 |
76,051,542 (GRCm39) |
missense |
probably damaging |
1.00 |
R5153:Ptprd
|
UTSW |
4 |
75,930,339 (GRCm39) |
missense |
probably damaging |
1.00 |
R5164:Ptprd
|
UTSW |
4 |
76,018,995 (GRCm39) |
splice site |
probably null |
|
R5287:Ptprd
|
UTSW |
4 |
75,872,405 (GRCm39) |
nonsense |
probably null |
|
R5305:Ptprd
|
UTSW |
4 |
75,900,863 (GRCm39) |
missense |
probably damaging |
1.00 |
R5362:Ptprd
|
UTSW |
4 |
76,047,050 (GRCm39) |
missense |
probably damaging |
1.00 |
R5403:Ptprd
|
UTSW |
4 |
75,872,405 (GRCm39) |
nonsense |
probably null |
|
R5531:Ptprd
|
UTSW |
4 |
75,977,904 (GRCm39) |
critical splice donor site |
probably null |
|
R5543:Ptprd
|
UTSW |
4 |
75,977,990 (GRCm39) |
missense |
probably damaging |
1.00 |
R5634:Ptprd
|
UTSW |
4 |
75,990,255 (GRCm39) |
missense |
probably benign |
0.01 |
R5719:Ptprd
|
UTSW |
4 |
75,972,839 (GRCm39) |
critical splice acceptor site |
probably null |
|
R5884:Ptprd
|
UTSW |
4 |
75,900,927 (GRCm39) |
missense |
probably damaging |
1.00 |
R6250:Ptprd
|
UTSW |
4 |
76,047,232 (GRCm39) |
missense |
probably damaging |
1.00 |
R6335:Ptprd
|
UTSW |
4 |
75,872,420 (GRCm39) |
missense |
probably damaging |
1.00 |
R6352:Ptprd
|
UTSW |
4 |
76,009,789 (GRCm39) |
splice site |
probably null |
|
R6533:Ptprd
|
UTSW |
4 |
76,046,765 (GRCm39) |
missense |
probably damaging |
1.00 |
R6756:Ptprd
|
UTSW |
4 |
75,873,536 (GRCm39) |
missense |
probably damaging |
1.00 |
R6782:Ptprd
|
UTSW |
4 |
76,243,377 (GRCm39) |
splice site |
probably null |
|
R7131:Ptprd
|
UTSW |
4 |
75,984,577 (GRCm39) |
missense |
probably damaging |
1.00 |
R7170:Ptprd
|
UTSW |
4 |
75,990,199 (GRCm39) |
missense |
probably benign |
0.06 |
R7233:Ptprd
|
UTSW |
4 |
75,978,020 (GRCm39) |
missense |
probably benign |
0.00 |
R7246:Ptprd
|
UTSW |
4 |
76,046,913 (GRCm39) |
missense |
probably damaging |
1.00 |
R7413:Ptprd
|
UTSW |
4 |
76,165,076 (GRCm39) |
missense |
probably benign |
0.00 |
R7428:Ptprd
|
UTSW |
4 |
76,004,705 (GRCm39) |
missense |
probably benign |
0.03 |
R7442:Ptprd
|
UTSW |
4 |
75,978,058 (GRCm39) |
nonsense |
probably null |
|
R7491:Ptprd
|
UTSW |
4 |
76,051,392 (GRCm39) |
missense |
probably benign |
0.23 |
R7526:Ptprd
|
UTSW |
4 |
75,984,564 (GRCm39) |
missense |
probably benign |
0.00 |
R7609:Ptprd
|
UTSW |
4 |
75,990,240 (GRCm39) |
missense |
probably benign |
0.03 |
R7612:Ptprd
|
UTSW |
4 |
76,004,696 (GRCm39) |
missense |
probably benign |
0.45 |
R7659:Ptprd
|
UTSW |
4 |
76,047,153 (GRCm39) |
missense |
probably benign |
0.03 |
R7743:Ptprd
|
UTSW |
4 |
76,004,326 (GRCm39) |
missense |
probably damaging |
1.00 |
R7748:Ptprd
|
UTSW |
4 |
76,017,741 (GRCm39) |
missense |
probably null |
0.39 |
R7788:Ptprd
|
UTSW |
4 |
75,916,841 (GRCm39) |
missense |
probably damaging |
1.00 |
R7836:Ptprd
|
UTSW |
4 |
75,900,881 (GRCm39) |
missense |
probably damaging |
0.99 |
R7937:Ptprd
|
UTSW |
4 |
76,013,772 (GRCm39) |
missense |
probably benign |
0.00 |
R8000:Ptprd
|
UTSW |
4 |
75,984,479 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8018:Ptprd
|
UTSW |
4 |
76,003,757 (GRCm39) |
missense |
probably damaging |
0.98 |
R8072:Ptprd
|
UTSW |
4 |
76,004,273 (GRCm39) |
missense |
probably benign |
0.01 |
R8119:Ptprd
|
UTSW |
4 |
76,047,263 (GRCm39) |
missense |
probably benign |
0.00 |
R8350:Ptprd
|
UTSW |
4 |
75,868,898 (GRCm39) |
missense |
probably damaging |
1.00 |
R8387:Ptprd
|
UTSW |
4 |
75,873,526 (GRCm39) |
missense |
probably damaging |
1.00 |
R8458:Ptprd
|
UTSW |
4 |
75,984,496 (GRCm39) |
missense |
probably benign |
0.00 |
R8529:Ptprd
|
UTSW |
4 |
76,047,262 (GRCm39) |
missense |
probably damaging |
1.00 |
R8699:Ptprd
|
UTSW |
4 |
75,959,629 (GRCm39) |
missense |
probably benign |
|
R8924:Ptprd
|
UTSW |
4 |
75,916,736 (GRCm39) |
critical splice donor site |
probably null |
|
R8984:Ptprd
|
UTSW |
4 |
75,863,251 (GRCm39) |
missense |
probably damaging |
1.00 |
R9024:Ptprd
|
UTSW |
4 |
75,874,567 (GRCm39) |
missense |
probably damaging |
1.00 |
R9204:Ptprd
|
UTSW |
4 |
75,872,315 (GRCm39) |
missense |
possibly damaging |
0.46 |
R9206:Ptprd
|
UTSW |
4 |
75,872,315 (GRCm39) |
missense |
possibly damaging |
0.46 |
R9259:Ptprd
|
UTSW |
4 |
75,990,200 (GRCm39) |
missense |
probably damaging |
0.99 |
R9311:Ptprd
|
UTSW |
4 |
76,051,320 (GRCm39) |
missense |
probably benign |
0.25 |
R9417:Ptprd
|
UTSW |
4 |
75,865,335 (GRCm39) |
missense |
probably damaging |
0.99 |
R9427:Ptprd
|
UTSW |
4 |
76,051,440 (GRCm39) |
missense |
probably benign |
0.01 |
R9579:Ptprd
|
UTSW |
4 |
75,872,315 (GRCm39) |
missense |
possibly damaging |
0.46 |
R9580:Ptprd
|
UTSW |
4 |
75,872,315 (GRCm39) |
missense |
possibly damaging |
0.46 |
R9701:Ptprd
|
UTSW |
4 |
75,916,896 (GRCm39) |
missense |
probably damaging |
1.00 |
RF016:Ptprd
|
UTSW |
4 |
76,046,892 (GRCm39) |
missense |
probably benign |
0.01 |
RF023:Ptprd
|
UTSW |
4 |
76,046,802 (GRCm39) |
missense |
probably damaging |
0.98 |
Z1176:Ptprd
|
UTSW |
4 |
76,051,451 (GRCm39) |
missense |
probably benign |
0.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GGGTATGTTGCAGGCACATC -3'
(R):5'- TGCTGCAGGAAAGGTGAACC -3'
Sequencing Primer
(F):5'- TGTTGCAGGCACATCCTCAAATAAAC -3'
(R):5'- ACCAATTGTATTAGGTTCTTCCCAG -3'
|
Posted On |
2018-02-28 |