Mutagenetix > Incidental Mutation

Incidental Mutation 'R6258:Zfp709'

506478

Institutional Source

Beutler Lab

Gene Symbol

Zfp709

Ensembl Gene

ENSMUSG00000056019

Gene Name

zinc finger protein 709

Synonyms

GIOT-4

MMRRC Submission

044375-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R6258 (G1)

Quality Score

217.468

Status

Validated

Chromosome

Chromosomal Location

72635912-72646409 bp(+) (GRCm39)

Type of Mutation

small deletion (1 aa in frame mutation)

DNA Base Change (assembly)

TCGACG to TCG at 72644552 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000140285 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034259] [ENSMUST00000188374] [ENSMUST00000188685]

AlphaFold

Q8VC29

Predicted Effect

probably benign
Transcript: ENSMUST00000034259

SMART Domains

Protein: ENSMUSP00000034259
Gene: ENSMUSG00000056019

Domain	Start	End	E-Value	Type
KRAB	3	68	3.08e-15	SMART
ZnF_C2H2	224	246	6.78e-3	SMART
ZnF_C2H2	252	274	2.09e-3	SMART
ZnF_C2H2	280	302	2.05e-2	SMART
ZnF_C2H2	308	330	2.4e-3	SMART
ZnF_C2H2	336	358	1.36e-2	SMART
ZnF_C2H2	364	386	1.36e-2	SMART
ZnF_C2H2	392	414	1.69e-3	SMART
ZnF_C2H2	420	442	5.14e-3	SMART
ZnF_C2H2	448	470	1.67e-2	SMART
ZnF_C2H2	476	498	1.1e-2	SMART
ZnF_C2H2	504	526	2.86e-1	SMART
ZnF_C2H2	532	554	7.26e-3	SMART
ZnF_C2H2	560	582	8.34e-3	SMART
ZnF_C2H2	588	610	1.5e-4	SMART
ZnF_C2H2	616	638	1.18e-2	SMART
ZnF_C2H2	644	666	1.06e-4	SMART
ZnF_C2H2	672	694	1.18e-2	SMART
ZnF_C2H2	700	722	8.94e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000188374

SMART Domains

Protein: ENSMUSP00000141000
Gene: ENSMUSG00000056019

Domain	Start	End	E-Value	Type
KRAB	4	56	9.2e-17	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000188685

SMART Domains

Protein: ENSMUSP00000140285
Gene: ENSMUSG00000056019

Domain	Start	End	E-Value	Type
KRAB	4	69	3.08e-15	SMART
ZnF_C2H2	225	247	6.78e-3	SMART
ZnF_C2H2	253	275	2.09e-3	SMART
ZnF_C2H2	281	303	2.05e-2	SMART
ZnF_C2H2	309	331	2.4e-3	SMART
ZnF_C2H2	337	359	1.36e-2	SMART
ZnF_C2H2	365	387	1.36e-2	SMART
ZnF_C2H2	393	415	1.69e-3	SMART
ZnF_C2H2	421	443	5.14e-3	SMART
ZnF_C2H2	449	471	1.67e-2	SMART
ZnF_C2H2	477	499	1.1e-2	SMART
ZnF_C2H2	505	527	2.86e-1	SMART
ZnF_C2H2	533	555	7.26e-3	SMART
ZnF_C2H2	561	583	8.34e-3	SMART
ZnF_C2H2	589	611	1.5e-4	SMART
ZnF_C2H2	617	639	1.18e-2	SMART
ZnF_C2H2	645	667	1.06e-4	SMART
ZnF_C2H2	673	695	1.18e-2	SMART
ZnF_C2H2	701	723	8.94e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203585

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.7%

Validation Efficiency

99% (74/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Zinc finger proteins (ZNFs) bind DNA and, through this binding, regulate gene transcription. Most ZNFs contain conserved C2H2 motifs and are classified as Kruppel-type zinc fingers. For a general description of these proteins, see ZNF91 (MIM 603971).[supplied by OMIM, Jul 2002]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl3	T	C	7: 82,178,191 (GRCm39)		probably null	Het
Alms1	A	T	6: 85,605,717 (GRCm39)	K2456*	probably null	Het
Alppl2	A	T	1: 87,016,184 (GRCm39)	M225K	probably damaging	Het
AU041133	A	G	10: 81,986,992 (GRCm39)	E215G	probably damaging	Het
Carmil3	T	A	14: 55,737,889 (GRCm39)	L815Q	probably damaging	Het
Casr	A	G	16: 36,337,971 (GRCm39)	C60R	probably damaging	Het
Cdc7	A	G	5: 107,117,093 (GRCm39)	K84E	probably damaging	Het
Cdc73	G	A	1: 143,567,211 (GRCm39)	T104I	probably benign	Het
Clcc1	G	A	3: 108,580,624 (GRCm39)	V313I	possibly damaging	Het
Cntn3	A	G	6: 102,254,178 (GRCm39)		probably null	Het
Crocc2	A	G	1: 93,141,360 (GRCm39)	K1171R	possibly damaging	Het
Ctsa	T	C	2: 164,676,281 (GRCm39)	V86A	probably damaging	Het
Cyp2s1	ACAGCAGCAGCAGCAGCAGCAGCAG	ACAGCAGCAGCAGCAGCAGCAG	7: 25,515,867 (GRCm39)		probably benign	Het
Dab1	C	T	4: 104,588,948 (GRCm39)	A524V	probably benign	Het
Dnah17	C	A	11: 118,017,148 (GRCm39)	W197C	probably damaging	Het
Dnah17	A	T	11: 118,017,150 (GRCm39)	W197R	probably damaging	Het
Dnah17	C	T	11: 118,017,149 (GRCm39)	W197*	probably null	Het
Egflam	T	A	15: 7,263,773 (GRCm39)	T726S	probably damaging	Het
Eml2	T	G	7: 18,913,289 (GRCm39)		probably null	Het
Ercc6	T	A	14: 32,279,813 (GRCm39)	D609E	probably benign	Het
Erg	C	A	16: 95,181,100 (GRCm39)	R147L	probably damaging	Het
Faiml	T	C	9: 99,114,513 (GRCm39)	I125M	possibly damaging	Het
Fbxo41	A	T	6: 85,455,537 (GRCm39)	L549H	probably damaging	Het
Fbxw2	A	T	2: 34,702,825 (GRCm39)		probably null	Het
Fgd6	T	A	10: 93,880,161 (GRCm39)	N338K	probably benign	Het
Gaa	C	A	11: 119,171,997 (GRCm39)	A700D	probably benign	Het
Gm32742	T	A	9: 51,068,862 (GRCm39)	I200F	probably damaging	Het
Gm4924	T	G	10: 82,213,307 (GRCm39)		probably benign	Het
Gm8369	G	A	19: 11,488,973 (GRCm39)	A87T	possibly damaging	Het
H2-M10.1	T	A	17: 36,634,994 (GRCm39)	I304F	unknown	Het
Ighv5-8	A	G	12: 113,618,611 (GRCm39)	T9A	possibly damaging	Het
Itgb4	C	T	11: 115,874,983 (GRCm39)	R447W	probably benign	Het
Jakmip1	G	T	5: 37,299,104 (GRCm39)	E775*	probably null	Het
Klhl40	T	C	9: 121,607,026 (GRCm39)	F62S	probably damaging	Het
Krtcap3	A	T	5: 31,409,572 (GRCm39)	R84W	probably damaging	Het
Lgr6	C	T	1: 134,921,748 (GRCm39)	A199T	probably damaging	Het
Lins1	T	C	7: 66,360,496 (GRCm39)		probably null	Het
Magi3	A	G	3: 103,996,912 (GRCm39)	L211P	probably damaging	Het
Map2k5	T	A	9: 63,124,647 (GRCm39)	I359F	probably benign	Het
Map4k5	C	A	12: 69,878,336 (GRCm39)	R355L	probably benign	Het
Mef2c	T	A	13: 83,801,057 (GRCm39)	D252E	probably damaging	Het
Methig1	T	C	15: 100,251,422 (GRCm39)	V111A	possibly damaging	Het
Mical3	A	T	6: 120,985,991 (GRCm39)	L150Q	probably damaging	Het
Nf1	A	T	11: 79,456,581 (GRCm39)		probably null	Het
Nisch	T	A	14: 30,899,085 (GRCm39)		probably benign	Het
Or4f15	C	T	2: 111,814,396 (GRCm39)	V8I	probably benign	Het
Or5p61	T	C	7: 107,758,181 (GRCm39)	N300D	probably damaging	Het
Pcdhb12	T	C	18: 37,569,892 (GRCm39)	V346A	probably benign	Het
Pde7b	T	C	10: 20,316,546 (GRCm39)	D168G	possibly damaging	Het
Pdzrn4	A	T	15: 92,655,562 (GRCm39)	E485V	probably damaging	Het
Pla2g4a	A	G	1: 149,733,238 (GRCm39)	S504P	probably benign	Het
Plin2	G	T	4: 86,575,526 (GRCm39)	A341D	probably damaging	Het
Psma8	A	G	18: 14,854,324 (GRCm39)	D68G	probably damaging	Het
Rcor3	G	A	1: 191,808,559 (GRCm39)	H207Y	probably benign	Het
Rptn	C	G	3: 93,305,437 (GRCm39)	H923Q	possibly damaging	Het
Ryr3	A	G	2: 112,490,449 (GRCm39)	F3795S	probably damaging	Het
Samm50	C	G	15: 84,084,512 (GRCm39)	P150A	probably damaging	Het
Samm50	C	A	15: 84,084,513 (GRCm39)	P150H	probably damaging	Het
Slc28a2b	A	T	2: 122,353,963 (GRCm39)	I530F	probably damaging	Het
Slc6a18	A	T	13: 73,818,164 (GRCm39)	C284*	probably null	Het
Smc3	T	A	19: 53,616,162 (GRCm39)		probably null	Het
Snrnp200	G	A	2: 127,060,343 (GRCm39)	G529D	possibly damaging	Het
Sord	T	A	2: 122,089,613 (GRCm39)		probably null	Het
Spdl1	T	A	11: 34,710,713 (GRCm39)	N345I	probably damaging	Het
Sucnr1	T	C	3: 59,993,778 (GRCm39)	L102P	probably damaging	Het
Tbc1d9	T	C	8: 83,937,145 (GRCm39)	W76R	probably damaging	Het
Tcerg1	T	A	18: 42,686,530 (GRCm39)	Y696N	probably damaging	Het
Thsd7b	A	G	1: 129,595,655 (GRCm39)	T492A	probably benign	Het
Trdmt1	T	A	2: 13,524,870 (GRCm39)	Q195L	probably benign	Het
Ubr3	A	G	2: 69,813,208 (GRCm39)		probably null	Het
Ung	A	T	5: 114,275,361 (GRCm39)	Y250F	probably benign	Het
Vezf1	A	G	11: 87,972,326 (GRCm39)	N229S	probably damaging	Het
Wdfy3	C	T	5: 102,020,831 (GRCm39)	R2491Q	possibly damaging	Het
Wdr97	C	A	15: 76,239,895 (GRCm39)	S277*	probably null	Het
Zfp1007	T	C	5: 109,824,433 (GRCm39)	H339R	probably benign	Het
Zscan4-ps1	C	A	7: 10,799,829 (GRCm39)	E353D	probably benign	Het

Other mutations in Zfp709

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03174:Zfp709	APN	8	72,642,870 (GRCm39)	missense	probably benign	0.03
IGL03187:Zfp709	APN	8	72,643,126 (GRCm39)	missense	probably benign	0.41
BB007:Zfp709	UTSW	8	72,644,684 (GRCm39)	missense	probably damaging	0.97
BB017:Zfp709	UTSW	8	72,644,684 (GRCm39)	missense	probably damaging	0.97
R0336:Zfp709	UTSW	8	72,644,449 (GRCm39)	missense	probably damaging	1.00
R1386:Zfp709	UTSW	8	72,644,506 (GRCm39)	missense	probably damaging	0.99
R1878:Zfp709	UTSW	8	72,643,891 (GRCm39)	missense	probably damaging	1.00
R2279:Zfp709	UTSW	8	72,642,934 (GRCm39)	missense	probably benign	0.31
R2320:Zfp709	UTSW	8	72,641,136 (GRCm39)	missense	probably damaging	1.00
R2885:Zfp709	UTSW	8	72,643,549 (GRCm39)	missense	probably benign	0.08
R3833:Zfp709	UTSW	8	72,642,906 (GRCm39)	missense	probably benign	0.00
R3926:Zfp709	UTSW	8	72,644,397 (GRCm39)	missense	probably damaging	1.00
R4165:Zfp709	UTSW	8	72,644,649 (GRCm39)	nonsense	probably null
R4179:Zfp709	UTSW	8	72,643,750 (GRCm39)	missense	probably damaging	1.00
R4963:Zfp709	UTSW	8	72,643,632 (GRCm39)	missense	probably benign	0.27
R5340:Zfp709	UTSW	8	72,643,596 (GRCm39)	missense	probably damaging	1.00
R5427:Zfp709	UTSW	8	72,642,976 (GRCm39)	missense	probably benign	0.27
R5513:Zfp709	UTSW	8	72,643,900 (GRCm39)	missense	probably damaging	1.00
R5639:Zfp709	UTSW	8	72,643,835 (GRCm39)	splice site	probably null
R5692:Zfp709	UTSW	8	72,643,999 (GRCm39)	missense	probably damaging	1.00
R5872:Zfp709	UTSW	8	72,643,363 (GRCm39)	missense	probably benign	0.03
R5940:Zfp709	UTSW	8	72,644,064 (GRCm39)	missense	possibly damaging	0.85
R6192:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6210:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6225:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6227:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6228:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6246:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6247:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6248:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6249:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6250:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6259:Zfp709	UTSW	8	72,644,552 (GRCm39)	small deletion	probably benign
R6371:Zfp709	UTSW	8	72,643,329 (GRCm39)	missense	probably damaging	1.00
R6875:Zfp709	UTSW	8	72,642,851 (GRCm39)	missense	possibly damaging	0.93
R7871:Zfp709	UTSW	8	72,643,308 (GRCm39)	missense	probably benign	0.02
R7930:Zfp709	UTSW	8	72,644,684 (GRCm39)	missense	probably damaging	0.97
R7943:Zfp709	UTSW	8	72,643,933 (GRCm39)	missense	probably damaging	1.00
R8202:Zfp709	UTSW	8	72,642,760 (GRCm39)	splice site	probably null
R8555:Zfp709	UTSW	8	72,643,476 (GRCm39)	missense	probably benign	0.04
R8735:Zfp709	UTSW	8	72,643,027 (GRCm39)	missense	probably benign	0.01
R9109:Zfp709	UTSW	8	72,644,648 (GRCm39)	missense	possibly damaging	0.86
R9298:Zfp709	UTSW	8	72,644,648 (GRCm39)	missense	possibly damaging	0.86
R9485:Zfp709	UTSW	8	72,643,669 (GRCm39)	missense	possibly damaging	0.77
R9740:Zfp709	UTSW	8	72,643,134 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TCTCTTCTTTGAGTGGTTGTCAAA -3'
(R):5'- TGCCTTTCCATGTTCTATACTTAGG -3'

Sequencing Primer
(F):5'- GGGAAAGCCTTTACTAATCCCAGTG -3'
(R):5'- ATACTTAGGGACTTCTACTGTGAGTC -3'

Posted On

2018-03-15