Mutagenetix > Incidental Mutation

Incidental Mutation 'R6261:Tbata'

506711

Institutional Source

Beutler Lab

Gene Symbol

Tbata

Ensembl Gene

ENSMUSG00000020096

Gene Name

thymus, brain and testes associated

Synonyms

1700021K02Rik, Spatial

MMRRC Submission

044404-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.130) question?

Stock #

R6261 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

61007743-61024620 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 61011644 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Lysine at position 60 (T60K)

Ref Sequence

ENSEMBL: ENSMUSP00000118942 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035894] [ENSMUST00000079235] [ENSMUST00000121297] [ENSMUST00000122261] [ENSMUST00000126831] [ENSMUST00000131879] [ENSMUST00000140456] [ENSMUST00000143207] [ENSMUST00000148181] [ENSMUST00000151886]

AlphaFold

Q7TSD4

Predicted Effect

probably benign
Transcript: ENSMUST00000035894
AA Change: T60K

PolyPhen 2 Score 0.294 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000036422
Gene: ENSMUSG00000020096
AA Change: T60K

Domain	Start	End	E-Value	Type
low complexity region	58	70	N/A	INTRINSIC
low complexity region	73	87	N/A	INTRINSIC
Pfam:SPATIAL	123	316	2.8e-64	PFAM
low complexity region	335	346	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000079235
AA Change: T65K

PolyPhen 2 Score 0.793 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000078227
Gene: ENSMUSG00000020096
AA Change: T65K

Domain	Start	End	E-Value	Type
low complexity region	63	75	N/A	INTRINSIC
low complexity region	78	92	N/A	INTRINSIC
Pfam:SPATIAL	128	230	2.4e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000121297
AA Change: T60K

PolyPhen 2 Score 0.294 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113253
Gene: ENSMUSG00000020096
AA Change: T60K

Domain	Start	End	E-Value	Type
low complexity region	58	70	N/A	INTRINSIC
Pfam:SPATIAL	82	191	2.2e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000122261
AA Change: T60K

PolyPhen 2 Score 0.294 (Sensitivity: 0.91; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000113902
Gene: ENSMUSG00000020096
AA Change: T60K

Domain	Start	End	E-Value	Type
low complexity region	58	70	N/A	INTRINSIC
Pfam:SPATIAL	82	282	6.7e-76	PFAM
low complexity region	301	312	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000126831

SMART Domains

Protein: ENSMUSP00000119957
Gene: ENSMUSG00000020096

Domain	Start	End	E-Value	Type
Pfam:SPATIAL	1	155	1.9e-45	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000131879
AA Change: T60K

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000118942
Gene: ENSMUSG00000020096
AA Change: T60K

Domain	Start	End	E-Value	Type
low complexity region	58	70	N/A	INTRINSIC
low complexity region	73	87	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000140456

Predicted Effect

probably benign
Transcript: ENSMUST00000143207

Predicted Effect

probably benign
Transcript: ENSMUST00000148181

Predicted Effect

probably benign
Transcript: ENSMUST00000151886

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.7%

Validation Efficiency

100% (65/65)

MGI Phenotype

FUNCTION: This gene encodes a putative transcription factor that is highly expressed in thymic cortical stromal cells, and may be involved in T-cell development. Its expression is developmentally regulated in the testis, where it is restricted to the haploid round spermatids during spermatogenesis, and thus this gene may also have a role in the control of male germ cell development. Alternative splicing of this gene results in two sets of transcript variants: the variants containing 5 additional exons at the 3' end encode long isoforms that are highly expressed in the testis, while the variants lacking the 3' end exons encode short isoforms that are highly expressed in the thymus. Most of the transcripts encoding the short isoforms have been shown to initiate translation from non-AUG (CUG) start sites. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased thymic pithelial cells and total thymocyte numbers without altering T cell development and function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot8	T	C	2: 164,636,979 (GRCm39)	D257G	probably damaging	Het
Adamtsl1	T	C	4: 86,255,115 (GRCm39)	V736A	probably benign	Het
Anln	A	G	9: 22,275,342 (GRCm39)	L521S	probably damaging	Het
Arfgap2	T	G	2: 91,100,627 (GRCm39)	S311A	probably benign	Het
Brdt	A	T	5: 107,496,369 (GRCm39)	E160D	probably benign	Het
Ccdc187	A	G	2: 26,166,215 (GRCm39)	I738T	probably damaging	Het
Cd59a	G	C	2: 103,934,550 (GRCm39)	G6A	probably damaging	Het
Cd5l	C	T	3: 87,275,915 (GRCm39)	P295L	probably benign	Het
Cdhr17	T	C	5: 17,017,183 (GRCm39)		noncoding transcript	Het
Cnot1	A	G	8: 96,468,549 (GRCm39)	S1432P	probably benign	Het
Cnot8	T	A	11: 58,004,877 (GRCm39)	I192N	probably damaging	Het
Col4a1	G	T	8: 11,257,409 (GRCm39)		probably null	Het
Cuta	A	G	17: 27,158,301 (GRCm39)	L11P	possibly damaging	Het
Cyp2c39	G	A	19: 39,556,463 (GRCm39)	R433H	probably damaging	Het
Cyp4a12b	T	A	4: 115,271,740 (GRCm39)	Y150*	probably null	Het
Dcaf15	G	A	8: 84,825,734 (GRCm39)	A291V	probably benign	Het
Dcstamp	A	T	15: 39,618,131 (GRCm39)	H180L	possibly damaging	Het
Egfr	A	G	11: 16,839,964 (GRCm39)	I659M	probably benign	Het
Fzd8	A	G	18: 9,214,598 (GRCm39)	E560G	possibly damaging	Het
Gm5111	A	T	6: 48,566,526 (GRCm39)		probably benign	Het
Gm7945	T	C	14: 41,104,780 (GRCm39)	T214A	unknown	Het
Gpi1	T	C	7: 33,920,170 (GRCm39)	T168A	possibly damaging	Het
Gys2	T	C	6: 142,405,134 (GRCm39)	I218V	probably benign	Het
Gzmf	T	A	14: 56,443,949 (GRCm39)	I74L	probably benign	Het
Hacl1	G	A	14: 31,357,728 (GRCm39)	A70V	probably damaging	Het
Herc2	T	A	7: 55,846,820 (GRCm39)	L3590*	probably null	Het
Idh2	GGTCCCAG	GG	7: 79,748,077 (GRCm39)		probably benign	Het
Igfals	G	T	17: 25,100,339 (GRCm39)	V477F	possibly damaging	Het
Igkv8-28	A	T	6: 70,120,874 (GRCm39)	V23E	probably benign	Het
Isg20l2	T	A	3: 87,839,395 (GRCm39)	V202E	probably damaging	Het
Jakmip2	A	G	18: 43,708,599 (GRCm39)	I288T	probably benign	Het
Kansl3	A	G	1: 36,404,686 (GRCm39)	V88A	probably benign	Het
Kcna3	A	G	3: 106,945,266 (GRCm39)	T510A	possibly damaging	Het
Map2k5	G	T	9: 63,245,380 (GRCm39)	L140I	probably benign	Het
Map3k19	A	G	1: 127,750,336 (GRCm39)	I1005T	possibly damaging	Het
Mmp25	G	A	17: 23,849,768 (GRCm39)	A541V	possibly damaging	Het
Ms4a14	T	A	19: 11,281,384 (GRCm39)	E391D	probably benign	Het
Mtrf1l	A	G	10: 5,765,550 (GRCm39)		probably null	Het
Myom1	A	G	17: 71,433,132 (GRCm39)	N1591S	probably damaging	Het
Nos1	G	A	5: 118,074,635 (GRCm39)	V1060M	probably benign	Het
Nsun5	C	T	5: 135,400,385 (GRCm39)	T142M	probably damaging	Het
Odc1	A	G	12: 17,600,655 (GRCm39)	E430G	probably benign	Het
Or8g36	C	A	9: 39,422,105 (GRCm39)	V304F	probably benign	Het
P2ry12	T	C	3: 59,125,328 (GRCm39)	I116V	probably null	Het
Patl1	T	A	19: 11,897,695 (GRCm39)	V94E	probably damaging	Het
Plin3	A	T	17: 56,588,488 (GRCm39)	Y255*	probably null	Het
Pou6f1	T	C	15: 100,477,827 (GRCm39)	T439A	probably damaging	Het
Prdm13	T	C	4: 21,678,366 (GRCm39)	K708R	probably damaging	Het
Prr14l	A	G	5: 32,986,748 (GRCm39)	S916P	possibly damaging	Het
Rab34	T	A	11: 78,082,028 (GRCm39)		probably null	Het
Rps7	A	G	12: 28,685,593 (GRCm39)	S21P	possibly damaging	Het
Scn9a	A	T	2: 66,314,240 (GRCm39)	L1815Q	probably damaging	Het
Sesn3	A	G	9: 14,232,459 (GRCm39)	Y244C	probably benign	Het
Slc15a2	A	G	16: 36,581,973 (GRCm39)	F284L	probably benign	Het
Slc25a44	C	T	3: 88,328,218 (GRCm39)	G72D	probably damaging	Het
Slco6d1	A	G	1: 98,427,588 (GRCm39)	T640A	probably benign	Het
Sspo	A	T	6: 48,439,125 (GRCm39)	E1591V	possibly damaging	Het
Tbc1d2	T	A	4: 46,637,692 (GRCm39)	T185S	possibly damaging	Het
Tlcd4	T	A	3: 121,028,708 (GRCm39)	I60F	possibly damaging	Het
Tmem87a	A	G	2: 120,234,502 (GRCm39)	S14P	possibly damaging	Het
Tnnt2	C	A	1: 135,778,292 (GRCm39)		probably null	Het
Trex1	A	G	9: 108,887,709 (GRCm39)	V94A	probably benign	Het
Ubtfl1	A	C	9: 18,320,592 (GRCm39)	D40A	possibly damaging	Het
Zc3hav1	A	T	6: 38,309,935 (GRCm39)	Y296N	probably benign	Het
Zfp521	T	A	18: 13,977,684 (GRCm39)	N910Y	probably damaging	Het
Zfp53	A	G	17: 21,728,975 (GRCm39)	E336G	possibly damaging	Het

Other mutations in Tbata

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01569:Tbata	APN	10	61,011,739 (GRCm39)	nonsense	probably null
IGL02311:Tbata	APN	10	61,015,234 (GRCm39)	nonsense	probably null
R0417:Tbata	UTSW	10	61,016,118 (GRCm39)	missense	probably damaging	1.00
R1537:Tbata	UTSW	10	61,019,270 (GRCm39)	splice site	probably null
R1956:Tbata	UTSW	10	61,019,256 (GRCm39)	missense	probably damaging	0.99
R1959:Tbata	UTSW	10	61,011,623 (GRCm39)	missense	possibly damaging	0.86
R2138:Tbata	UTSW	10	61,015,063 (GRCm39)	missense	probably benign	0.40
R4835:Tbata	UTSW	10	61,019,132 (GRCm39)	missense	probably damaging	1.00
R6667:Tbata	UTSW	10	61,021,142 (GRCm39)	missense	probably damaging	1.00
R7355:Tbata	UTSW	10	61,010,099 (GRCm39)	unclassified	probably benign
R7863:Tbata	UTSW	10	61,011,521 (GRCm39)	missense	probably benign	0.02
R9607:Tbata	UTSW	10	61,011,626 (GRCm39)	missense	probably benign
X0066:Tbata	UTSW	10	61,024,384 (GRCm39)	missense	probably damaging	1.00
Z1191:Tbata	UTSW	10	61,022,172 (GRCm39)	missense	probably benign	0.12

Predicted Primers

PCR Primer
(F):5'- ACCACGGGCCTCTCTTTAAC -3'
(R):5'- TGATCAATCAGCGATCGACC -3'

Sequencing Primer
(F):5'- TAACTATCCCTGCTTCAGTCCAAAGG -3'
(R):5'- TGTGGCCAGATCTTGCGC -3'

Posted On

2018-03-15