Mutagenetix > Incidental Mutation

Incidental Mutation 'R6329:Ccdc66'

509422

Institutional Source

Beutler Lab

Gene Symbol

Ccdc66

Ensembl Gene

ENSMUSG00000046753

Gene Name

coiled-coil domain containing 66

Synonyms

E230015L20Rik

MMRRC Submission

044483-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.153) question?

Stock #

R6329 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

27203047-27230417 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 27208441 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 760 (S760R)

Ref Sequence

ENSEMBL: ENSMUSP00000153023 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022450] [ENSMUST00000050480] [ENSMUST00000223689]

AlphaFold

Q6NS45

Predicted Effect

probably benign
Transcript: ENSMUST00000022450

SMART Domains

Protein: ENSMUSP00000022450
Gene: ENSMUSG00000040651

Domain	Start	End	E-Value	Type
low complexity region	20	27	N/A	INTRINSIC
low complexity region	42	61	N/A	INTRINSIC
low complexity region	74	88	N/A	INTRINSIC
Pfam:DUF3715	153	314	1.5e-55	PFAM
low complexity region	442	457	N/A	INTRINSIC
low complexity region	1087	1102	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000050480
AA Change: S604R

PolyPhen 2 Score 0.153 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000052546
Gene: ENSMUSG00000046753
AA Change: S604R

Domain	Start	End	E-Value	Type
coiled coil region	252	284	N/A	INTRINSIC
Pfam:CCDC66	409	561	1e-49	PFAM
low complexity region	715	721	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000157990

Predicted Effect

probably benign
Transcript: ENSMUST00000223689
AA Change: S760R

PolyPhen 2 Score 0.202 (Sensitivity: 0.92; Specificity: 0.88)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224837

Predicted Effect

probably benign
Transcript: ENSMUST00000225139

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a null mutation display slowly progressing photoreceptor degeneration. [provided by MGI curators]

Allele List at MGI

All alleles(6) : Gene trapped(6)

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579F01Rik	T	C	3: 137,879,457 (GRCm39)	H72R	probably damaging	Het
Abca13	A	T	11: 9,227,937 (GRCm39)	N660I	probably damaging	Het
Actr8	C	T	14: 29,715,041 (GRCm39)	R619*	probably null	Het
Adam18	C	A	8: 25,104,843 (GRCm39)	G657V	probably damaging	Het
Adcyap1	A	G	17: 93,510,227 (GRCm39)	E85G	probably benign	Het
Akr1c14	A	G	13: 4,137,302 (GRCm39)	Y305C	probably damaging	Het
Ankdd1b	T	A	13: 96,591,388 (GRCm39)	H37L	possibly damaging	Het
Ap4e1	T	C	2: 126,903,636 (GRCm39)	L846P	probably benign	Het
Aqp9	A	T	9: 71,039,966 (GRCm39)	Y105*	probably null	Het
Arid1b	C	T	17: 5,387,538 (GRCm39)	Q1664*	probably null	Het
Aup1	A	G	6: 83,031,588 (GRCm39)		probably benign	Het
Bnip1	C	A	17: 27,005,684 (GRCm39)	S64*	probably null	Het
Calcr	T	A	6: 3,687,621 (GRCm39)	Q422L	probably damaging	Het
Ccdc162	T	A	10: 41,539,147 (GRCm39)	D407V	possibly damaging	Het
Cd22	T	A	7: 30,577,193 (GRCm39)	E38V	probably damaging	Het
Cggbp1	T	C	16: 64,676,383 (GRCm39)	Y150H	probably damaging	Het
Chd3	T	C	11: 69,252,510 (GRCm39)	K263R	possibly damaging	Het
Col4a2	T	A	8: 11,496,238 (GRCm39)	F1620I	probably damaging	Het
Col6a2	T	C	10: 76,435,662 (GRCm39)	T858A	probably benign	Het
Dnah7a	T	A	1: 53,580,273 (GRCm39)	D1554V	probably damaging	Het
Dnajc25	A	T	4: 59,013,678 (GRCm39)	Q132L	probably benign	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Homo
Ehbp1l1	A	C	19: 5,768,795 (GRCm39)	I836S	possibly damaging	Het
Elf1	A	G	14: 79,810,779 (GRCm39)	Q288R	possibly damaging	Het
Fbn1	C	A	2: 125,150,393 (GRCm39)	V2608L	possibly damaging	Het
Frmpd1	T	C	4: 45,268,551 (GRCm39)	I232T	possibly damaging	Het
Fuca1	T	A	4: 135,662,137 (GRCm39)	I355N	probably damaging	Het
Gcnt4	A	G	13: 97,083,781 (GRCm39)	D359G	probably damaging	Het
Gm5134	T	C	10: 75,790,494 (GRCm39)	M30T	possibly damaging	Het
Grk1	T	G	8: 13,455,704 (GRCm39)	L196R	probably damaging	Het
Igkv14-126	A	C	6: 67,873,548 (GRCm39)	D92A	probably damaging	Het
Kmt2c	A	G	5: 25,520,600 (GRCm39)	S1837P	probably benign	Het
Lhx4	T	A	1: 155,578,300 (GRCm39)	T281S	probably benign	Het
Lrrc55	G	T	2: 85,026,653 (GRCm39)	H124N	probably benign	Het
Marchf8	T	A	6: 116,383,277 (GRCm39)	I566N	possibly damaging	Het
Mycbp2	G	A	14: 103,393,288 (GRCm39)	A3091V	probably benign	Het
Nlrp4b	A	G	7: 10,458,847 (GRCm39)	N355S	probably benign	Het
Nmur2	A	G	11: 55,920,411 (GRCm39)	V278A	probably benign	Het
Nod1	T	C	6: 54,921,689 (GRCm39)	M210V	probably benign	Het
Nt5c1b	T	A	12: 10,422,138 (GRCm39)	C63*	probably null	Het
Or1e1f	A	G	11: 73,855,568 (GRCm39)	I45V	possibly damaging	Het
Or1j17	A	T	2: 36,578,694 (GRCm39)	K227*	probably null	Het
Or4g7	C	T	2: 111,309,573 (GRCm39)	A148V	possibly damaging	Het
Or5d37	G	A	2: 87,924,008 (GRCm39)	P91S	probably damaging	Het
Or7g21	A	C	9: 19,032,253 (GRCm39)	M1L	probably benign	Het
Or8b37	T	C	9: 37,959,121 (GRCm39)	V201A	probably benign	Het
Or8g24	C	T	9: 38,989,199 (GRCm39)	V281I	probably benign	Het
Osbp2	T	A	11: 3,665,153 (GRCm39)	S517C	probably damaging	Het
Pcdha1	C	T	18: 37,065,301 (GRCm39)	P655L	probably damaging	Het
Pdcd6	A	G	13: 74,452,098 (GRCm39)	Y181H	probably damaging	Het
Perp	G	A	10: 18,731,502 (GRCm39)	G154S	probably damaging	Het
Perp	G	T	10: 18,731,503 (GRCm39)	G154V	probably damaging	Het
Pira13	T	C	7: 3,825,850 (GRCm39)	T340A	probably damaging	Het
Prokr1	T	G	6: 87,558,774 (GRCm39)	T204P	possibly damaging	Het
Prpf3	A	T	3: 95,739,890 (GRCm39)	C630S	probably damaging	Het
Pter	C	A	2: 12,985,359 (GRCm39)	H230N	probably damaging	Het
Ptprs	A	T	17: 56,724,427 (GRCm39)	Y1167*	probably null	Het
Rad54l2	T	C	9: 106,595,121 (GRCm39)	I279V	possibly damaging	Het
Rora	T	A	9: 69,280,468 (GRCm39)	L347Q	probably damaging	Het
Runx1t1	T	G	4: 13,785,136 (GRCm39)	M1R	probably null	Het
Sdcbp	A	G	4: 6,381,064 (GRCm39)	S70G	probably benign	Het
Serpinb12	A	G	1: 106,881,493 (GRCm39)	Y210C	probably damaging	Het
Sipa1	T	C	19: 5,701,517 (GRCm39)	E1015G	probably damaging	Het
Slc15a2	A	C	16: 36,572,144 (GRCm39)	L740R	possibly damaging	Het
Specc1	A	G	11: 62,047,379 (GRCm39)	E916G	probably damaging	Het
Spta1	T	C	1: 174,041,743 (GRCm39)	I1371T	possibly damaging	Het
Tagln3	T	C	16: 45,533,365 (GRCm39)	M130V	probably benign	Het
Tchh	A	T	3: 93,353,752 (GRCm39)	E1064V	unknown	Het
Tdp1	A	T	12: 99,880,330 (GRCm39)	S464C	probably damaging	Het
Tdp1	G	C	12: 99,880,331 (GRCm39)	S464T	probably benign	Het
Tenm3	T	C	8: 48,729,884 (GRCm39)	Y1374C	probably damaging	Het
Tmprss3	A	T	17: 31,402,833 (GRCm39)	Y455*	probably null	Het
Ttc5	A	G	14: 51,003,385 (GRCm39)	V433A	possibly damaging	Het
Wnt5a	A	T	14: 28,240,449 (GRCm39)	R180*	probably null	Het
Zfp53	A	G	17: 21,728,372 (GRCm39)	D135G	probably benign	Het
Zfp619	T	A	7: 39,186,969 (GRCm39)	C1000S	probably damaging	Het
Zfp647	G	A	15: 76,796,285 (GRCm39)	P125L	probably damaging	Het

Other mutations in Ccdc66

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00516:Ccdc66	APN	14	27,220,413 (GRCm39)	missense	probably damaging	1.00
IGL01333:Ccdc66	APN	14	27,215,272 (GRCm39)	missense	possibly damaging	0.60
IGL01684:Ccdc66	APN	14	27,222,206 (GRCm39)	missense	possibly damaging	0.66
IGL02327:Ccdc66	APN	14	27,215,343 (GRCm39)	missense	probably damaging	1.00
IGL02668:Ccdc66	APN	14	27,219,298 (GRCm39)	missense	possibly damaging	0.94
IGL02698:Ccdc66	APN	14	27,212,749 (GRCm39)	nonsense	probably null
IGL03293:Ccdc66	APN	14	27,212,628 (GRCm39)	missense	probably damaging	1.00
1mM(1):Ccdc66	UTSW	14	27,220,732 (GRCm39)	missense	possibly damaging	0.75
IGL02796:Ccdc66	UTSW	14	27,208,523 (GRCm39)	missense	possibly damaging	0.93
R0374:Ccdc66	UTSW	14	27,220,430 (GRCm39)	missense	probably damaging	1.00
R0381:Ccdc66	UTSW	14	27,213,890 (GRCm39)	missense	probably damaging	1.00
R0498:Ccdc66	UTSW	14	27,222,197 (GRCm39)	critical splice donor site	probably null
R0831:Ccdc66	UTSW	14	27,219,313 (GRCm39)	missense	probably benign	0.00
R0969:Ccdc66	UTSW	14	27,219,319 (GRCm39)	missense	probably damaging	0.98
R1558:Ccdc66	UTSW	14	27,208,463 (GRCm39)	missense	probably benign	0.41
R2203:Ccdc66	UTSW	14	27,208,790 (GRCm39)	missense	probably benign	0.03
R4015:Ccdc66	UTSW	14	27,205,793 (GRCm39)	missense	probably damaging	1.00
R4225:Ccdc66	UTSW	14	27,212,736 (GRCm39)	missense	probably damaging	1.00
R4584:Ccdc66	UTSW	14	27,222,468 (GRCm39)	missense	probably benign	0.31
R4600:Ccdc66	UTSW	14	27,222,377 (GRCm39)	missense	probably damaging	1.00
R4601:Ccdc66	UTSW	14	27,222,377 (GRCm39)	missense	probably damaging	1.00
R4603:Ccdc66	UTSW	14	27,222,377 (GRCm39)	missense	probably damaging	1.00
R4610:Ccdc66	UTSW	14	27,222,377 (GRCm39)	missense	probably damaging	1.00
R4611:Ccdc66	UTSW	14	27,222,377 (GRCm39)	missense	probably damaging	1.00
R4832:Ccdc66	UTSW	14	27,222,524 (GRCm39)	missense	probably benign	0.00
R5098:Ccdc66	UTSW	14	27,220,750 (GRCm39)	missense	probably damaging	1.00
R5322:Ccdc66	UTSW	14	27,204,484 (GRCm39)	missense	probably damaging	1.00
R5586:Ccdc66	UTSW	14	27,228,668 (GRCm39)	missense	probably damaging	1.00
R5681:Ccdc66	UTSW	14	27,208,698 (GRCm39)	missense	probably benign	0.07
R5788:Ccdc66	UTSW	14	27,220,448 (GRCm39)	missense	probably benign	0.10
R5790:Ccdc66	UTSW	14	27,222,404 (GRCm39)	missense	possibly damaging	0.62
R7171:Ccdc66	UTSW	14	27,215,229 (GRCm39)	missense	possibly damaging	0.94
R7268:Ccdc66	UTSW	14	27,208,880 (GRCm39)	missense	probably benign	0.24
R7337:Ccdc66	UTSW	14	27,222,290 (GRCm39)	missense	probably damaging	1.00
R7348:Ccdc66	UTSW	14	27,222,293 (GRCm39)	missense	probably damaging	1.00
R7552:Ccdc66	UTSW	14	27,220,820 (GRCm39)	missense	possibly damaging	0.63
R8698:Ccdc66	UTSW	14	27,212,647 (GRCm39)	missense	probably benign	0.07
R8990:Ccdc66	UTSW	14	27,208,655 (GRCm39)	missense	probably benign	0.34
R9065:Ccdc66	UTSW	14	27,213,850 (GRCm39)	missense	probably damaging	0.98
R9455:Ccdc66	UTSW	14	27,208,872 (GRCm39)	missense	probably benign	0.01
R9599:Ccdc66	UTSW	14	27,219,381 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGATGCAGCTAGCCAAAGC -3'
(R):5'- AGCCTGCTTGGAATATAAACAAACC -3'

Sequencing Primer
(F):5'- GCACAGACTATACAGCATACACGTTC -3'
(R):5'- AAAAGTATGTTCCTGCATCAGCC -3'

Posted On

2018-04-02