Mutagenetix > Incidental Mutation

Incidental Mutation 'R6322:Nrm'

510177

Institutional Source

Beutler Lab

Gene Symbol

Nrm

Ensembl Gene

ENSMUSG00000059791

Gene Name

nurim (nuclear envelope membrane protein)

Synonyms

2610307M02Rik

MMRRC Submission

044476-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.836) question?

Stock #

R6322 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

36172210-36176294 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 36175605 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Leucine at position 237 (Q237L)

Ref Sequence

ENSEMBL: ENSMUSP00000073873 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074259] [ENSMUST00000113814] [ENSMUST00000122899] [ENSMUST00000127442] [ENSMUST00000144382] [ENSMUST00000190496] [ENSMUST00000174873] [ENSMUST00000187690]

AlphaFold

Q8VC65

Predicted Effect

possibly damaging
Transcript: ENSMUST00000074259
AA Change: Q237L

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000073873
Gene: ENSMUSG00000059791
AA Change: Q237L

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
transmembrane domain	59	81	N/A	INTRINSIC
transmembrane domain	94	116	N/A	INTRINSIC
transmembrane domain	136	158	N/A	INTRINSIC
low complexity region	212	234	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113814

SMART Domains

Protein: ENSMUSP00000109445
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin_N	28	117	1.3e-42	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	353	365	N/A	INTRINSIC
Pfam:Phostensin	417	541	7.7e-49	PFAM
low complexity region	560	573	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000122899

SMART Domains

Protein: ENSMUSP00000120343
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin_N	28	117	1.3e-42	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	353	365	N/A	INTRINSIC
Pfam:Phostensin	417	541	7.7e-49	PFAM
low complexity region	560	573	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127442

SMART Domains

Protein: ENSMUSP00000115753
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin_N	27	117	1.5e-39	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	353	365	N/A	INTRINSIC
Pfam:Phostensin	417	540	6.9e-34	PFAM
low complexity region	560	573	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000144382

SMART Domains

Protein: ENSMUSP00000116100
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin_N	28	117	1.3e-42	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	353	365	N/A	INTRINSIC
Pfam:Phostensin	417	541	7.7e-49	PFAM
low complexity region	560	573	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145804

Predicted Effect

probably benign
Transcript: ENSMUST00000172931

SMART Domains

Protein: ENSMUSP00000134569
Gene: ENSMUSG00000059791

Domain	Start	End	E-Value	Type
transmembrane domain	37	59	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000190496

SMART Domains

Protein: ENSMUSP00000140652
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin	1	113	3.6e-43	PFAM
low complexity region	132	145	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000174873

SMART Domains

Protein: ENSMUSP00000133355
Gene: ENSMUSG00000059791

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000187690

SMART Domains

Protein: ENSMUSP00000141094
Gene: ENSMUSG00000034595

Domain	Start	End	E-Value	Type
Pfam:Phostensin_N	28	117	1.3e-42	PFAM
low complexity region	138	154	N/A	INTRINSIC
low complexity region	353	365	N/A	INTRINSIC
Pfam:Phostensin	417	541	7.7e-49	PFAM
low complexity region	560	573	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184224

Meta Mutation Damage Score

0.0799

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.7%

Validation Efficiency

98% (51/52)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains transmembrane domains and resides within the inner nuclear membrane, where it is tightly associated with the nucleus. This protein shares homology with isoprenylcysteine carboxymethyltransferase enzymes. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Jul 2012]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	T	C	2: 68,559,843 (GRCm39)	V211A	probably benign	Het
Adora3	G	A	3: 105,814,760 (GRCm39)	R170H	probably benign	Het
Aldh1l1	T	C	6: 90,539,680 (GRCm39)	I203T	probably benign	Het
Alox12b	T	C	11: 69,049,199 (GRCm39)	Y83H	possibly damaging	Het
Atcay	A	T	10: 81,049,125 (GRCm39)	I159K	probably damaging	Het
Blvra	A	G	2: 126,922,459 (GRCm39)		probably benign	Het
Catspere2	T	A	1: 177,845,296 (GRCm39)	Y105*	probably null	Het
Celsr2	A	G	3: 108,319,890 (GRCm39)	F974S	probably damaging	Het
Cfap44	C	T	16: 44,254,029 (GRCm39)	R918*	probably null	Het
Cpa6	T	A	1: 10,547,346 (GRCm39)	R181S	possibly damaging	Het
Dlg1	A	G	16: 31,675,297 (GRCm39)	N730D	probably damaging	Het
Eif2ak1	A	G	5: 143,835,913 (GRCm39)	T535A	probably benign	Het
Fam13c	A	T	10: 70,334,721 (GRCm39)	D149V	probably damaging	Het
Fam171a1	G	A	2: 3,227,392 (GRCm39)	V717I	probably benign	Het
Fchsd1	A	G	18: 38,098,753 (GRCm39)	V290A	probably benign	Het
Gm10549	C	A	18: 33,597,358 (GRCm39)		probably benign	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Gm15446	A	T	5: 110,091,383 (GRCm39)	H545L	probably damaging	Het
Heatr9	T	G	11: 83,407,538 (GRCm39)	K215T	possibly damaging	Het
Hfe	T	A	13: 23,889,879 (GRCm39)	H210L	probably damaging	Het
Lama2	T	C	10: 27,066,543 (GRCm39)	T1113A	probably damaging	Het
Lipe	A	T	7: 25,079,961 (GRCm39)	V686E	probably damaging	Het
Map3k20	T	G	2: 72,263,814 (GRCm39)	L488V	possibly damaging	Het
Moxd1	C	T	10: 24,160,709 (GRCm39)	T454I	probably damaging	Het
Mrpl58	C	T	11: 115,301,492 (GRCm39)	R189*	probably null	Het
Myl10	G	C	5: 136,726,825 (GRCm39)	V70L	probably benign	Het
Nkx1-1	T	C	5: 33,588,389 (GRCm39)	N300D	probably damaging	Het
Numa1	T	C	7: 101,650,127 (GRCm39)	L1286P	probably damaging	Het
Or4f4-ps1	T	C	2: 111,329,729 (GRCm39)	F44S	possibly damaging	Het
Pappa	C	A	4: 65,232,896 (GRCm39)	A1345D	probably damaging	Het
Pds5a	T	C	5: 65,854,177 (GRCm39)	I22V	probably benign	Het
Phf21b	C	A	15: 84,671,580 (GRCm39)	R438L	possibly damaging	Het
Pik3r5	T	C	11: 68,383,567 (GRCm39)	L462P	probably benign	Het
Plagl2	T	C	2: 153,073,806 (GRCm39)	E365G	probably benign	Het
Plxna2	A	G	1: 194,436,675 (GRCm39)	Y677C	possibly damaging	Het
Pramel13	A	G	4: 144,119,475 (GRCm39)	M364T	probably benign	Het
Prkcd	C	A	14: 30,321,620 (GRCm39)	G410W	probably damaging	Het
Rgl1	T	C	1: 152,428,186 (GRCm39)	I348V	probably damaging	Het
Rnmt	C	T	18: 68,452,285 (GRCm39)	P386S	probably damaging	Het
Rtn3	G	A	19: 7,435,503 (GRCm39)	P163L	possibly damaging	Het
Sfxn1	T	C	13: 54,258,869 (GRCm39)	C275R	possibly damaging	Het
Sh2b2	A	G	5: 136,253,042 (GRCm39)	S377P	probably damaging	Het
Sh3bp1	C	T	15: 78,795,715 (GRCm39)	P615S	probably damaging	Het
Simc1	T	C	13: 54,698,382 (GRCm39)	L1334S	probably damaging	Het
Slc9a2	C	A	1: 40,781,813 (GRCm39)	Y347*	probably null	Het
Snapc5	T	A	9: 64,089,455 (GRCm39)	I71K	probably damaging	Het
Tmem161a	T	C	8: 70,634,764 (GRCm39)	F447S	probably damaging	Het
Tns3	A	G	11: 8,442,147 (GRCm39)	C739R	probably benign	Het
Trappc11	A	T	8: 47,983,808 (GRCm39)	V28D	possibly damaging	Het
Ubr3	C	T	2: 69,786,429 (GRCm39)	Q848*	probably null	Het
Zbtb17	G	A	4: 141,190,694 (GRCm39)	G171S	probably benign	Het

Other mutations in Nrm

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00869:Nrm	APN	17	36,175,647 (GRCm39)	missense	probably benign	0.06
IGL02511:Nrm	APN	17	36,172,316 (GRCm39)	missense	probably damaging	1.00
R0211:Nrm	UTSW	17	36,175,503 (GRCm39)	missense	probably damaging	1.00
R0557:Nrm	UTSW	17	36,175,524 (GRCm39)	missense	probably damaging	1.00
R0602:Nrm	UTSW	17	36,175,156 (GRCm39)	nonsense	probably null
R0635:Nrm	UTSW	17	36,175,156 (GRCm39)	nonsense	probably null
R1571:Nrm	UTSW	17	36,175,079 (GRCm39)	missense	probably damaging	1.00
R2046:Nrm	UTSW	17	36,175,109 (GRCm39)	missense	probably benign	0.00
R4073:Nrm	UTSW	17	36,172,424 (GRCm39)	splice site	probably benign
R4612:Nrm	UTSW	17	36,174,421 (GRCm39)	missense	probably benign	0.00
R4828:Nrm	UTSW	17	36,175,082 (GRCm39)	missense	possibly damaging	0.72
R6038:Nrm	UTSW	17	36,172,397 (GRCm39)	missense	possibly damaging	0.83
R6456:Nrm	UTSW	17	36,176,292 (GRCm39)	splice site	probably null
R7345:Nrm	UTSW	17	36,175,476 (GRCm39)	missense	probably damaging	1.00
R8730:Nrm	UTSW	17	36,175,423 (GRCm39)	missense	probably benign
R9789:Nrm	UTSW	17	36,172,411 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AGGGCTTGACTTTGAGTTCC -3'
(R):5'- TTCAGGGCATGACTTCCAACC -3'

Sequencing Primer
(F):5'- CCATGTGCTGGGACTGG -3'
(R):5'- GGGCATGACTTCCAACCTCCTC -3'

Posted On

2018-04-02