Mutagenetix > Incidental Mutation

Incidental Mutation 'R6336:Vmn2r30'

510758

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r30

Ensembl Gene

ENSMUSG00000070847

Gene Name

vomeronasal 2, receptor 30

Synonyms

V2r15

MMRRC Submission

044490-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R6336 (G1)

Quality Score

220.009

Status

Not validated

Chromosome

Chromosomal Location

7314722-7340530 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 7337307 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 110 (T110S)

Ref Sequence

ENSEMBL: ENSMUSP00000134223 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072475] [ENSMUST00000174368] [ENSMUST00000210877]

AlphaFold

K7N5W1

Predicted Effect

probably benign
Transcript: ENSMUST00000072475
AA Change: T110S

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000072296
Gene: ENSMUSG00000070847
AA Change: T110S

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	160	469	2.1e-25	PFAM
Pfam:NCD3G	512	565	8.1e-21	PFAM
Pfam:7tm_3	598	833	2.1e-55	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174368
AA Change: T110S

PolyPhen 2 Score 0.031 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000134223
Gene: ENSMUSG00000070847
AA Change: T110S

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	155	468	1.5e-27	PFAM
Pfam:NCD3G	512	564	7.2e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000210877

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

98% (45/46)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	G	T	5: 113,331,349 (GRCm39)	P955Q	possibly damaging	Het
Adgrv1	T	C	13: 81,534,100 (GRCm39)	N5827S	probably benign	Het
Akt3	T	C	1: 176,859,278 (GRCm39)	D431G	probably damaging	Het
Anapc16	A	T	10: 59,824,651 (GRCm39)	V76D	possibly damaging	Het
Ankib1	A	T	5: 3,750,377 (GRCm39)	Y755*	probably null	Het
Ankrd6	A	G	4: 32,860,411 (GRCm39)	S11P	probably damaging	Het
Card6	T	A	15: 5,128,646 (GRCm39)	K917*	probably null	Het
Ccdc152	T	C	15: 3,330,611 (GRCm39)	I21M	probably damaging	Het
Ccdc40	A	G	11: 119,122,819 (GRCm39)	E207G	possibly damaging	Het
Clca3a2	G	T	3: 144,512,239 (GRCm39)	A499E	probably benign	Het
Cntnap5b	C	T	1: 100,286,394 (GRCm39)	A383V	probably benign	Het
Ddo	T	C	10: 40,509,027 (GRCm39)	V89A	probably damaging	Het
Depdc5	T	C	5: 33,121,851 (GRCm39)	176	probably null	Het
Dlgap1	T	A	17: 71,122,284 (GRCm39)	D904E	probably damaging	Het
Ephb4	T	A	5: 137,370,347 (GRCm39)	L849H	probably damaging	Het
Fbxl13	A	G	5: 21,728,545 (GRCm39)		probably null	Het
Fer1l6	C	A	15: 58,431,081 (GRCm39)	Y245*	probably null	Het
Foxred2	A	G	15: 77,839,964 (GRCm39)	Y109H	probably damaging	Het
Gabarapl1	A	G	6: 129,514,491 (GRCm39)	D43G	probably benign	Het
Gabrb1	A	C	5: 72,187,241 (GRCm39)	E178A	possibly damaging	Het
Gbp11	A	G	5: 105,473,355 (GRCm39)			Het
Grin3b	C	A	10: 79,812,295 (GRCm39)	A845E	probably damaging	Het
Hoxd4	A	G	2: 74,557,705 (GRCm39)	Y28C	probably damaging	Het
Igsf10	G	A	3: 59,237,760 (GRCm39)	T807M	probably benign	Het
Kcnt1	A	G	2: 25,778,767 (GRCm39)		probably null	Het
Kdm5a	C	A	6: 120,375,939 (GRCm39)	T565K	probably damaging	Het
Map7d1	A	G	4: 126,130,475 (GRCm39)	S412P	probably damaging	Het
Mok	A	G	12: 110,800,558 (GRCm39)		probably null	Het
Mto1	A	T	9: 78,381,117 (GRCm39)	I73F	probably damaging	Het
Mtss2	G	A	8: 111,458,796 (GRCm39)	D310N	probably damaging	Het
Ncf2	T	C	1: 152,709,821 (GRCm39)	Y393H	probably damaging	Het
Or13c25	A	T	4: 52,911,459 (GRCm39)	C112S	probably damaging	Het
Or2f1b	T	C	6: 42,739,591 (GRCm39)	S202P	probably damaging	Het
Or2y14	G	T	11: 49,405,369 (GRCm39)	K301N	probably damaging	Het
Or4f47	A	C	2: 111,972,751 (GRCm39)	I154L	probably benign	Het
Or4k49	A	G	2: 111,494,964 (GRCm39)	H131R	possibly damaging	Het
Or52z1	T	C	7: 103,437,452 (GRCm39)	T11A	possibly damaging	Het
Phxr2	T	A	10: 98,961,952 (GRCm39)		probably benign	Het
Potefam3f	A	G	8: 20,499,951 (GRCm39)	K242E	unknown	Het
Rnf17	A	G	14: 56,658,626 (GRCm39)		probably null	Het
Serpinb9d	T	C	13: 33,378,677 (GRCm39)	M41T	probably damaging	Het
Slc12a5	T	A	2: 164,834,384 (GRCm39)		probably null	Het
Slc22a6	G	A	19: 8,599,494 (GRCm39)	R331H	probably benign	Het
Spg11	G	C	2: 121,943,440 (GRCm39)		probably null	Het
Src	T	A	2: 157,299,075 (GRCm39)	V24E	probably benign	Het
Srgap1	A	T	10: 121,761,846 (GRCm39)	Y101N	probably benign	Het
Vwa3a	A	G	7: 120,361,646 (GRCm39)	E119G	possibly damaging	Het
Whamm	T	A	7: 81,241,512 (GRCm39)	D274E	probably damaging	Het

Other mutations in Vmn2r30

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01797:Vmn2r30	APN	7	7,337,195 (GRCm39)	missense	probably benign
IGL02114:Vmn2r30	APN	7	7,340,408 (GRCm39)	missense	possibly damaging	0.62
IGL02429:Vmn2r30	APN	7	7,337,243 (GRCm39)	missense	possibly damaging	0.95
IGL03214:Vmn2r30	APN	7	7,337,259 (GRCm39)	missense	probably benign	0.00
R1723:Vmn2r30	UTSW	7	7,337,259 (GRCm39)	missense	probably benign	0.00
R4472:Vmn2r30	UTSW	7	7,320,091 (GRCm39)	missense	probably damaging	1.00
R5409:Vmn2r30	UTSW	7	7,315,547 (GRCm39)	missense	probably damaging	1.00
R5979:Vmn2r30	UTSW	7	7,315,334 (GRCm39)	missense	probably damaging	0.99
R6035:Vmn2r30	UTSW	7	7,337,350 (GRCm39)	missense	probably benign	0.34
R6035:Vmn2r30	UTSW	7	7,337,350 (GRCm39)	missense	probably benign	0.34
R6904:Vmn2r30	UTSW	7	7,315,547 (GRCm39)	missense	probably damaging	1.00
R7124:Vmn2r30	UTSW	7	7,337,183 (GRCm39)	missense	probably benign	0.05
R8415:Vmn2r30	UTSW	7	7,315,359 (GRCm39)	missense	probably damaging	0.98
R8558:Vmn2r30	UTSW	7	7,315,655 (GRCm39)	missense	possibly damaging	0.61
R9267:Vmn2r30	UTSW	7	7,340,432 (GRCm39)	missense	possibly damaging	0.83
R9744:Vmn2r30	UTSW	7	7,315,284 (GRCm39)	missense	possibly damaging	0.91
V8831:Vmn2r30	UTSW	7	7,337,148 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AACTCACACGCGGAGATAAG -3'
(R):5'- ATGTCAGATGCAGAAACTTCCAG -3'

Sequencing Primer
(F):5'- GAAGCTGTCCAGGTACATCCAG -3'
(R):5'- CAGATGCAGAAACTTCCAGTATAGTG -3'

Posted On

2018-04-02