Incidental Mutation 'R6335:Trpc4'
| ID |
512894 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Trpc4
|
| Ensembl Gene |
ENSMUSG00000027748 |
| Gene Name |
transient receptor potential cation channel, subfamily C, member 4 |
| Synonyms |
Trrp4, Trp4, CCE1, STRPC4 |
| MMRRC Submission |
044489-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.252)
|
| Stock # |
R6335 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
54063456-54225892 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (2 bp from exon) |
| DNA Base Change (assembly) |
T to C
at 54224995 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000143593
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029311]
[ENSMUST00000200048]
[ENSMUST00000200341]
|
| AlphaFold |
Q9QUQ5 |
| Predicted Effect |
silent
Transcript: ENSMUST00000029311
|
| SMART Domains |
Protein: ENSMUSP00000029311
Gene: ENSMUSG00000027748
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
33 |
63 |
4e-7 |
BLAST |
|
ANK
|
69 |
98 |
8.72e-1 |
SMART |
|
ANK
|
141 |
170 |
5.09e-2 |
SMART |
|
Pfam:TRP_2
|
176 |
238 |
1.2e-30 |
PFAM |
|
transmembrane domain
|
328 |
350 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
363 |
632 |
4.2e-33 |
PFAM |
|
low complexity region
|
763 |
780 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000200048
|
| SMART Domains |
Protein: ENSMUSP00000143593
Gene: ENSMUSG00000027748
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
33 |
63 |
2e-7 |
BLAST |
|
ANK
|
69 |
98 |
8.72e-1 |
SMART |
|
ANK
|
141 |
170 |
5.09e-2 |
SMART |
|
Pfam:TRP_2
|
176 |
238 |
1.1e-30 |
PFAM |
|
transmembrane domain
|
328 |
350 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans
|
363 |
632 |
3.5e-33 |
PFAM |
|
low complexity region
|
763 |
782 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200341
|
| SMART Domains |
Protein: ENSMUSP00000142921
Gene: ENSMUSG00000027748
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ANK
|
33 |
63 |
2e-7 |
BLAST |
|
ANK
|
69 |
98 |
8.72e-1 |
SMART |
|
ANK
|
141 |
170 |
5.09e-2 |
SMART |
|
Pfam:TRP_2
|
176 |
238 |
6.4e-33 |
PFAM |
|
transmembrane domain
|
331 |
351 |
N/A |
INTRINSIC |
|
transmembrane domain
|
366 |
383 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.9273 |
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.1%
- 20x: 94.5%
|
| Validation Efficiency |
100% (59/59) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the canonical subfamily of transient receptor potential cation channels. The encoded protein forms a non-selective calcium-permeable cation channel that is activated by Gq-coupled receptors and tyrosine kinases, and plays a role in multiple processes including endothelial permeability, vasodilation, neurotransmitter release and cell proliferation. Single nucleotide polymorphisms in this gene may be associated with generalized epilepsy with photosensitivity. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous null mice exhibit a significant reduction in agonist-induced Ca2+ entry and vasorelaxation of aortic rings. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 59 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Atp11a |
T |
C |
8: 12,909,481 (GRCm39) |
|
probably null |
Het |
| Best3 |
G |
T |
10: 116,838,556 (GRCm39) |
V205F |
probably benign |
Het |
| C1qtnf1 |
A |
G |
11: 118,338,960 (GRCm39) |
H210R |
probably damaging |
Het |
| Camkv |
T |
C |
9: 107,823,894 (GRCm39) |
|
probably null |
Het |
| Cdk5rap2 |
A |
C |
4: 70,184,849 (GRCm39) |
D1200E |
possibly damaging |
Het |
| Cep192 |
T |
A |
18: 67,967,784 (GRCm39) |
I756N |
probably damaging |
Het |
| Crocc2 |
A |
T |
1: 93,130,560 (GRCm39) |
Q947L |
probably benign |
Het |
| Dcaf1 |
A |
G |
9: 106,715,845 (GRCm39) |
T321A |
possibly damaging |
Het |
| Dgkz |
T |
C |
2: 91,774,724 (GRCm39) |
M87V |
probably benign |
Het |
| Dmrt2 |
T |
A |
19: 25,650,935 (GRCm39) |
S40R |
possibly damaging |
Het |
| Dpep1 |
T |
G |
8: 123,927,391 (GRCm39) |
L315R |
probably damaging |
Het |
| Fam221b |
G |
T |
4: 43,665,942 (GRCm39) |
T223N |
possibly damaging |
Het |
| Fasn |
A |
T |
11: 120,706,185 (GRCm39) |
V1053E |
probably damaging |
Het |
| Galc |
T |
C |
12: 98,208,973 (GRCm39) |
D227G |
probably damaging |
Het |
| Grik1 |
A |
G |
16: 87,744,794 (GRCm39) |
L486P |
probably damaging |
Het |
| Grik5 |
A |
G |
7: 24,713,019 (GRCm39) |
S836P |
probably benign |
Het |
| Grpel2 |
T |
C |
18: 61,852,792 (GRCm39) |
K70R |
possibly damaging |
Het |
| Ipo7 |
A |
G |
7: 109,617,675 (GRCm39) |
D15G |
possibly damaging |
Het |
| Iqgap1 |
A |
G |
7: 80,377,772 (GRCm39) |
Y1284H |
probably damaging |
Het |
| Lmo7 |
T |
C |
14: 102,138,072 (GRCm39) |
S692P |
probably damaging |
Het |
| Mecom |
A |
G |
3: 30,034,905 (GRCm39) |
L447P |
probably damaging |
Het |
| Mtor |
A |
G |
4: 148,550,384 (GRCm39) |
D680G |
probably damaging |
Het |
| Muc16 |
T |
A |
9: 18,572,004 (GRCm39) |
I172F |
unknown |
Het |
| Musk |
A |
G |
4: 58,366,811 (GRCm39) |
I476M |
probably benign |
Het |
| Myef2 |
T |
C |
2: 124,951,632 (GRCm39) |
T268A |
probably damaging |
Het |
| Naip1 |
A |
G |
13: 100,563,060 (GRCm39) |
S702P |
probably damaging |
Het |
| Napa |
G |
T |
7: 15,849,562 (GRCm39) |
S258I |
probably benign |
Het |
| Nfasc |
T |
A |
1: 132,504,132 (GRCm39) |
I1039F |
probably damaging |
Het |
| Nlrc5 |
A |
G |
8: 95,228,902 (GRCm39) |
S1238G |
probably benign |
Het |
| Or10q12 |
T |
C |
19: 13,746,144 (GRCm39) |
V146A |
probably benign |
Het |
| Or1j12 |
A |
G |
2: 36,342,734 (GRCm39) |
I46V |
probably benign |
Het |
| Or5w8 |
T |
A |
2: 87,687,811 (GRCm39) |
C97* |
probably null |
Het |
| Pacs1 |
G |
T |
19: 5,210,005 (GRCm39) |
N215K |
probably damaging |
Het |
| Parp10 |
A |
G |
15: 76,126,388 (GRCm39) |
S267P |
probably benign |
Het |
| Pbrm1 |
G |
T |
14: 30,806,052 (GRCm39) |
C995F |
probably damaging |
Het |
| Pcdh7 |
A |
T |
5: 58,099,607 (GRCm39) |
|
probably null |
Het |
| Ppef2 |
T |
C |
5: 92,383,613 (GRCm39) |
Y499C |
probably damaging |
Het |
| Pramel16 |
G |
T |
4: 143,675,602 (GRCm39) |
T408K |
probably benign |
Het |
| Prex2 |
A |
C |
1: 11,180,544 (GRCm39) |
I370L |
probably benign |
Het |
| Ptprd |
A |
G |
4: 75,872,420 (GRCm39) |
Y1350H |
probably damaging |
Het |
| Rasgrp1 |
T |
C |
2: 117,124,351 (GRCm39) |
K284E |
probably damaging |
Het |
| Rexo1 |
A |
T |
10: 80,379,915 (GRCm39) |
Y23N |
probably damaging |
Het |
| Rnd2 |
C |
T |
11: 101,359,825 (GRCm39) |
L57F |
probably damaging |
Het |
| Sash3 |
C |
T |
X: 47,248,398 (GRCm39) |
L307F |
probably damaging |
Homo |
| Scn9a |
T |
A |
2: 66,398,608 (GRCm39) |
M1L |
possibly damaging |
Het |
| Serpinb6e |
C |
A |
13: 34,021,805 (GRCm39) |
L174F |
probably benign |
Het |
| Siae |
C |
T |
9: 37,544,277 (GRCm39) |
T275I |
probably benign |
Het |
| Sptbn5 |
C |
A |
2: 119,884,900 (GRCm39) |
|
probably benign |
Het |
| Ss18l2 |
C |
T |
9: 121,541,672 (GRCm39) |
T55I |
probably damaging |
Het |
| Taf1c |
A |
G |
8: 120,328,518 (GRCm39) |
C163R |
probably damaging |
Het |
| Tanc2 |
C |
T |
11: 105,748,382 (GRCm39) |
R505W |
probably damaging |
Het |
| Tango6 |
C |
A |
8: 107,419,308 (GRCm39) |
P285Q |
possibly damaging |
Het |
| Tdrd9 |
G |
T |
12: 112,008,186 (GRCm39) |
|
probably null |
Het |
| Tead3 |
A |
T |
17: 28,552,299 (GRCm39) |
L307H |
probably damaging |
Het |
| Ticrr |
A |
C |
7: 79,344,031 (GRCm39) |
|
probably null |
Het |
| Upb1 |
A |
T |
10: 75,264,135 (GRCm39) |
T194S |
probably benign |
Het |
| Vav3 |
A |
G |
3: 109,470,512 (GRCm39) |
N566S |
probably benign |
Het |
| Vmn1r196 |
T |
A |
13: 22,477,887 (GRCm39) |
S175R |
probably benign |
Het |
| Zscan29 |
T |
C |
2: 120,991,917 (GRCm39) |
N589D |
possibly damaging |
Het |
|
| Other mutations in Trpc4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00780:Trpc4
|
APN |
3 |
54,209,596 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01067:Trpc4
|
APN |
3 |
54,129,983 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01475:Trpc4
|
APN |
3 |
54,173,828 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
IGL01544:Trpc4
|
APN |
3 |
54,209,567 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01688:Trpc4
|
APN |
3 |
54,173,495 (GRCm39) |
splice site |
probably benign |
|
|
IGL02134:Trpc4
|
APN |
3 |
54,223,075 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
IGL02237:Trpc4
|
APN |
3 |
54,129,783 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02301:Trpc4
|
APN |
3 |
54,198,653 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL02549:Trpc4
|
APN |
3 |
54,129,770 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL02742:Trpc4
|
APN |
3 |
54,206,667 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02815:Trpc4
|
APN |
3 |
54,206,695 (GRCm39) |
splice site |
probably benign |
|
|
R0498:Trpc4
|
UTSW |
3 |
54,198,632 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0555:Trpc4
|
UTSW |
3 |
54,209,511 (GRCm39) |
splice site |
probably benign |
|
|
R0609:Trpc4
|
UTSW |
3 |
54,102,189 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1351:Trpc4
|
UTSW |
3 |
54,102,423 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1595:Trpc4
|
UTSW |
3 |
54,223,236 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1623:Trpc4
|
UTSW |
3 |
54,206,600 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1763:Trpc4
|
UTSW |
3 |
54,102,243 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R1843:Trpc4
|
UTSW |
3 |
54,187,415 (GRCm39) |
missense |
probably benign |
0.19 |
|
R1856:Trpc4
|
UTSW |
3 |
54,187,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1936:Trpc4
|
UTSW |
3 |
54,187,311 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2196:Trpc4
|
UTSW |
3 |
54,209,614 (GRCm39) |
missense |
probably benign |
0.03 |
|
R2441:Trpc4
|
UTSW |
3 |
54,129,704 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R2877:Trpc4
|
UTSW |
3 |
54,198,761 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3846:Trpc4
|
UTSW |
3 |
54,225,433 (GRCm39) |
missense |
probably benign |
0.22 |
|
R3931:Trpc4
|
UTSW |
3 |
54,225,516 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4854:Trpc4
|
UTSW |
3 |
54,209,639 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5024:Trpc4
|
UTSW |
3 |
54,102,217 (GRCm39) |
missense |
probably benign |
0.11 |
|
R5284:Trpc4
|
UTSW |
3 |
54,187,368 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5320:Trpc4
|
UTSW |
3 |
54,206,599 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5973:Trpc4
|
UTSW |
3 |
54,223,263 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6276:Trpc4
|
UTSW |
3 |
54,225,441 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7082:Trpc4
|
UTSW |
3 |
54,206,519 (GRCm39) |
nonsense |
probably null |
|
|
R7215:Trpc4
|
UTSW |
3 |
54,102,317 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R7299:Trpc4
|
UTSW |
3 |
54,225,048 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R7423:Trpc4
|
UTSW |
3 |
54,225,450 (GRCm39) |
missense |
probably benign |
|
|
R7459:Trpc4
|
UTSW |
3 |
54,198,653 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7538:Trpc4
|
UTSW |
3 |
54,225,516 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7542:Trpc4
|
UTSW |
3 |
54,223,075 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7823:Trpc4
|
UTSW |
3 |
54,209,640 (GRCm39) |
nonsense |
probably null |
|
|
R7868:Trpc4
|
UTSW |
3 |
54,209,707 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8046:Trpc4
|
UTSW |
3 |
54,102,335 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8164:Trpc4
|
UTSW |
3 |
54,223,226 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8235:Trpc4
|
UTSW |
3 |
54,209,669 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8263:Trpc4
|
UTSW |
3 |
54,129,756 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8438:Trpc4
|
UTSW |
3 |
54,129,674 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R8854:Trpc4
|
UTSW |
3 |
54,102,122 (GRCm39) |
nonsense |
probably null |
|
|
R8987:Trpc4
|
UTSW |
3 |
54,102,132 (GRCm39) |
missense |
probably benign |
0.09 |
|
R9023:Trpc4
|
UTSW |
3 |
54,102,254 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R9196:Trpc4
|
UTSW |
3 |
54,129,872 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9210:Trpc4
|
UTSW |
3 |
54,173,741 (GRCm39) |
missense |
probably benign |
0.07 |
|
R9350:Trpc4
|
UTSW |
3 |
54,209,610 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9600:Trpc4
|
UTSW |
3 |
54,102,248 (GRCm39) |
nonsense |
probably null |
|
|
R9605:Trpc4
|
UTSW |
3 |
54,225,550 (GRCm39) |
missense |
probably benign |
|
|
R9644:Trpc4
|
UTSW |
3 |
54,129,699 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9749:Trpc4
|
UTSW |
3 |
54,102,302 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9755:Trpc4
|
UTSW |
3 |
54,223,215 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0066:Trpc4
|
UTSW |
3 |
54,102,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AATGATGTTTCCGTAAGTCAGCAC -3'
(R):5'- CAGCAGCATTTTGTTTTGACCG -3'
Sequencing Primer
(F):5'- AGCACCTAACGTGTCATTTGG -3'
(R):5'- ACCCGAAGTTTTTGATATCAGCCAC -3'
|
| Posted On |
2018-04-27 |
Incidental Mutation