Mutagenetix > Incidental Mutation

Incidental Mutation 'R6360:Dennd2a'

513060

Institutional Source

Beutler Lab

Gene Symbol

Dennd2a

Ensembl Gene

ENSMUSG00000038456

Gene Name

DENN domain containing 2A

Synonyms

B930096L08Rik

MMRRC Submission

044510-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.149) question?

Stock #

R6360 (G1)

Quality Score

190.009

Status

Validated

Chromosome

Chromosomal Location

39439312-39534801 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 39470076 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 539 (A539T)

Ref Sequence

ENSEMBL: ENSMUSP00000045367 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036877] [ENSMUST00000154149]

AlphaFold

Q8C4S8

Predicted Effect

probably benign
Transcript: ENSMUST00000036877
AA Change: A539T

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000045367
Gene: ENSMUSG00000038456
AA Change: A539T

Domain	Start	End	E-Value	Type
Blast:DENN	9	430	1e-149	BLAST
low complexity region	445	457	N/A	INTRINSIC
low complexity region	508	520	N/A	INTRINSIC
uDENN	554	646	2.06e-31	SMART
DENN	653	837	7.1e-76	SMART
dDENN	888	953	1.84e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149162

Predicted Effect

probably benign
Transcript: ENSMUST00000154149

SMART Domains

Protein: ENSMUSP00000116907
Gene: ENSMUSG00000038456

Domain	Start	End	E-Value	Type
Blast:DENN	9	420	1e-152	BLAST

Meta Mutation Damage Score

0.0612

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.3%
20x: 95.2%

Validation Efficiency

98% (59/60)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arhgap10	G	A	8: 77,985,831 (GRCm39)	Q657*	probably null	Het
Car15	T	C	16: 17,655,930 (GRCm39)	T560A	probably benign	Het
Cass4	C	T	2: 172,274,531 (GRCm39)	H769Y	probably damaging	Het
Cdh6	A	G	15: 13,041,546 (GRCm39)	I506T	possibly damaging	Het
Clstn3	G	T	6: 124,415,388 (GRCm39)	R659S	possibly damaging	Het
Cntnap5b	C	T	1: 100,359,461 (GRCm39)	R695*	probably null	Het
Cpsf1	CCCCTGCATGAGGCAGGTCCC	CCCC	15: 76,481,655 (GRCm39)		probably null	Het
Dab2ip	A	G	2: 35,600,278 (GRCm39)	H355R	probably benign	Het
Dnajc18	T	C	18: 35,819,762 (GRCm39)	E173G	probably damaging	Het
Dock7	T	C	4: 98,857,899 (GRCm39)	I1472V	probably benign	Het
Esco1	A	T	18: 10,574,931 (GRCm39)	F714I	probably damaging	Het
Fam107a	T	G	14: 8,299,619 (GRCm38)	H73P	probably damaging	Het
Flg	A	G	3: 93,197,908 (GRCm39)		probably benign	Het
Fyn	C	A	10: 39,402,879 (GRCm39)	T217K	possibly damaging	Het
Gbp9	T	C	5: 105,231,596 (GRCm39)	D330G	probably benign	Het
Gin1	T	C	1: 97,720,264 (GRCm39)	S509P	possibly damaging	Het
Gm17067	A	C	7: 42,357,906 (GRCm39)	S199A	probably benign	Het
Grk4	A	T	5: 34,831,881 (GRCm39)	K50M	probably damaging	Het
Inpp4b	A	G	8: 82,629,481 (GRCm39)	H272R	probably benign	Het
Ipo7	T	A	7: 109,626,336 (GRCm39)	L48Q	probably damaging	Het
Kbtbd2	A	G	6: 56,756,191 (GRCm39)	I515T	probably damaging	Het
Kcnu1	T	A	8: 26,351,208 (GRCm39)	S190R	possibly damaging	Het
Kpnb1	T	C	11: 97,064,096 (GRCm39)	N336S	probably benign	Het
Lbr	G	T	1: 181,659,720 (GRCm39)	D158E	probably benign	Het
Mphosph10	T	C	7: 64,039,703 (GRCm39)	Q89R	probably benign	Het
Nectin3	T	A	16: 46,231,472 (GRCm39)	T21S	probably benign	Het
Numb	C	A	12: 83,844,036 (GRCm39)	R383L	probably damaging	Het
Or2p2	A	T	13: 21,256,753 (GRCm39)	N239K	probably damaging	Het
Or9a7	G	T	6: 40,521,647 (GRCm39)	Q89K	possibly damaging	Het
Pcdhb11	A	T	18: 37,555,212 (GRCm39)	I181F	probably benign	Het
Pcgf2	T	A	11: 97,583,235 (GRCm39)		probably null	Het
Pdzd8	T	C	19: 59,289,415 (GRCm39)	T662A	probably benign	Het
Pex13	A	C	11: 23,605,690 (GRCm39)	V180G	probably benign	Het
Pira1	A	T	7: 3,739,503 (GRCm39)	L455Q	probably damaging	Het
Pkp4	T	A	2: 59,045,091 (GRCm39)	V22D	probably benign	Het
Prkn	T	C	17: 12,222,939 (GRCm39)	F363S	probably damaging	Het
Prpf4b	A	C	13: 35,085,416 (GRCm39)	D954A	probably damaging	Het
Rfx8	T	C	1: 39,720,125 (GRCm39)	I317V	probably benign	Het
Rnaseh2b	T	C	14: 62,598,868 (GRCm39)	S198P	probably damaging	Het
Rock1	A	T	18: 10,116,778 (GRCm39)	C453S	possibly damaging	Het
Saxo4	T	C	19: 10,456,845 (GRCm39)	N167D	probably damaging	Het
Scarf1	G	T	11: 75,406,495 (GRCm39)	G260W	probably damaging	Het
Scyl1	T	C	19: 5,810,599 (GRCm39)	E538G	probably damaging	Het
Sec14l5	A	T	16: 4,990,859 (GRCm39)	I267F	probably damaging	Het
Senp6	T	A	9: 80,021,088 (GRCm39)	V256D	probably benign	Het
Sf3b4	G	A	3: 96,084,044 (GRCm39)		probably benign	Het
Ssh1	T	C	5: 114,099,408 (GRCm39)		probably null	Het
Tas2r143	A	C	6: 42,377,769 (GRCm39)	M200L	probably benign	Het
Tbc1d22a	C	T	15: 86,098,830 (GRCm39)	P19S	probably damaging	Het
Tent5b	T	C	4: 133,214,067 (GRCm39)	F313L	probably damaging	Het
Tmc5	T	A	7: 118,233,189 (GRCm39)	M1K	probably null	Het
Tnc	T	C	4: 63,918,970 (GRCm39)	Y1151C	probably damaging	Het
Tshz3	A	G	7: 36,468,866 (GRCm39)	E285G	probably damaging	Het
Txndc11	C	T	16: 10,902,656 (GRCm39)	V664M	probably damaging	Het
Ube2g1	A	T	11: 72,553,908 (GRCm39)	N20Y	probably damaging	Het
Ufl1	T	A	4: 25,265,476 (GRCm39)	I369L	probably benign	Het
Vwf	A	T	6: 125,660,489 (GRCm39)	T2666S	probably benign	Het
Yif1a	A	G	19: 5,142,369 (GRCm39)	M259V	probably benign	Het
Zbtb46	T	C	2: 181,033,248 (GRCm39)	D471G	probably damaging	Het

Other mutations in Dennd2a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01385:Dennd2a	APN	6	39,500,070 (GRCm39)	missense	probably damaging	1.00
IGL01482:Dennd2a	APN	6	39,457,243 (GRCm39)	missense	probably damaging	0.98
IGL02135:Dennd2a	APN	6	39,457,205 (GRCm39)	nonsense	probably null
IGL02206:Dennd2a	APN	6	39,500,383 (GRCm39)	missense	probably damaging	1.00
IGL02649:Dennd2a	APN	6	39,447,290 (GRCm39)	missense	probably benign	0.11
IGL03057:Dennd2a	APN	6	39,485,182 (GRCm39)	missense	probably damaging	0.98
R0310:Dennd2a	UTSW	6	39,441,135 (GRCm39)	splice site	probably benign
R0326:Dennd2a	UTSW	6	39,474,044 (GRCm39)	missense	probably damaging	1.00
R0360:Dennd2a	UTSW	6	39,485,233 (GRCm39)	missense	probably benign	0.13
R0364:Dennd2a	UTSW	6	39,485,233 (GRCm39)	missense	probably benign	0.13
R0394:Dennd2a	UTSW	6	39,499,746 (GRCm39)	missense	possibly damaging	0.92
R0680:Dennd2a	UTSW	6	39,459,996 (GRCm39)	missense	probably damaging	1.00
R1741:Dennd2a	UTSW	6	39,470,091 (GRCm39)	missense	probably damaging	0.99
R1744:Dennd2a	UTSW	6	39,457,185 (GRCm39)	missense	probably benign	0.26
R2070:Dennd2a	UTSW	6	39,442,053 (GRCm39)	missense	probably damaging	1.00
R3833:Dennd2a	UTSW	6	39,483,657 (GRCm39)	missense	probably damaging	0.98
R3833:Dennd2a	UTSW	6	39,483,651 (GRCm39)	missense	probably damaging	0.97
R4120:Dennd2a	UTSW	6	39,442,030 (GRCm39)	missense	probably damaging	0.99
R4583:Dennd2a	UTSW	6	39,499,776 (GRCm39)	missense	probably damaging	1.00
R4842:Dennd2a	UTSW	6	39,474,044 (GRCm39)	missense	probably damaging	1.00
R4887:Dennd2a	UTSW	6	39,474,093 (GRCm39)	missense	probably benign	0.03
R4901:Dennd2a	UTSW	6	39,499,621 (GRCm39)	missense	probably benign	0.00
R5065:Dennd2a	UTSW	6	39,472,110 (GRCm39)	critical splice donor site	probably null
R5413:Dennd2a	UTSW	6	39,441,227 (GRCm39)	missense	probably damaging	1.00
R6181:Dennd2a	UTSW	6	39,462,554 (GRCm39)	missense	probably benign	0.14
R6239:Dennd2a	UTSW	6	39,465,750 (GRCm39)	missense	probably damaging	1.00
R7115:Dennd2a	UTSW	6	39,483,645 (GRCm39)	missense	probably damaging	1.00
R7419:Dennd2a	UTSW	6	39,500,397 (GRCm39)	missense	probably damaging	1.00
R7567:Dennd2a	UTSW	6	39,499,743 (GRCm39)	missense	probably benign
R7587:Dennd2a	UTSW	6	39,460,069 (GRCm39)	missense	probably damaging	1.00
R7662:Dennd2a	UTSW	6	39,470,037 (GRCm39)	missense	probably benign	0.03
R7781:Dennd2a	UTSW	6	39,470,000 (GRCm39)	missense	probably damaging	0.99
R7962:Dennd2a	UTSW	6	39,457,207 (GRCm39)	missense	possibly damaging	0.91
R8683:Dennd2a	UTSW	6	39,500,137 (GRCm39)	nonsense	probably null
R8961:Dennd2a	UTSW	6	39,462,555 (GRCm39)	missense	probably damaging	0.96
R9424:Dennd2a	UTSW	6	39,485,294 (GRCm39)	nonsense	probably null
R9765:Dennd2a	UTSW	6	39,473,907 (GRCm39)	critical splice donor site	probably null
R9767:Dennd2a	UTSW	6	39,483,709 (GRCm39)	missense	probably damaging	0.98
X0026:Dennd2a	UTSW	6	39,485,301 (GRCm39)	missense	possibly damaging	0.61
Z1177:Dennd2a	UTSW	6	39,500,408 (GRCm39)	missense	probably benign	0.38

Predicted Primers

PCR Primer
(F):5'- AGAACGTGGTAGTCCCCATG -3'
(R):5'- CCCACAAGTTTGGCAAGAAGC -3'

Sequencing Primer
(F):5'- TGGTAGTCCCCATGCAGCC -3'
(R):5'- GCAAGAAGCCAAAGAGTTTTCTAC -3'

Posted On

2018-04-27