Mutagenetix > Incidental Mutation

Incidental Mutation 'R6358:Gorasp2'

513318

Institutional Source

Beutler Lab

Gene Symbol

Gorasp2

Ensembl Gene

ENSMUSG00000014959

Gene Name

golgi reassembly stacking protein 2

Synonyms

ENSMUSG00000075299, 9430094F20Rik, GOLPH2, GRASP55, 5730520M13Rik, GRS2, p59

MMRRC Submission

044508-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.097) question?

Stock #

R6358 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

70491520-70522069 bp(+) (GRCm39)

Type of Mutation

start codon destroyed

DNA Base Change (assembly)

T to A at 70503104 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 1 (M1K)

Ref Sequence

ENSEMBL: ENSMUSP00000107820 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028509] [ENSMUST00000112201] [ENSMUST00000112205] [ENSMUST00000133432]

AlphaFold

Q99JX3

Predicted Effect

probably benign
Transcript: ENSMUST00000028509

SMART Domains

Protein: ENSMUSP00000028509
Gene: ENSMUSG00000014959

Domain	Start	End	E-Value	Type
PDZ	5	75	8.14e-1	SMART
internal_repeat_1	107	196	4.52e-17	PROSPERO
low complexity region	236	252	N/A	INTRINSIC
low complexity region	307	329	N/A	INTRINSIC
low complexity region	333	358	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000112201
AA Change: M1K

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000107820
Gene: ENSMUSG00000014959
AA Change: M1K

Domain	Start	End	E-Value	Type
Pfam:GRASP55_65	1	62	4.6e-11	PFAM
Pfam:GRASP55_65	49	185	1.9e-65	PFAM
low complexity region	216	232	N/A	INTRINSIC
low complexity region	287	309	N/A	INTRINSIC
low complexity region	313	338	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112205

SMART Domains

Protein: ENSMUSP00000107824
Gene: ENSMUSG00000014959

Domain	Start	End	E-Value	Type
PDZ	5	75	3.9e-3	SMART
internal_repeat_1	107	196	7.65e-17	PROSPERO
low complexity region	236	252	N/A	INTRINSIC
low complexity region	307	329	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130970

Predicted Effect

probably benign
Transcript: ENSMUST00000133432

SMART Domains

Protein: ENSMUSP00000121549
Gene: ENSMUSG00000014959

Domain	Start	End	E-Value	Type
PDZ	5	75	8.14e-1	SMART
internal_repeat_1	107	196	1.1e-15	PROSPERO
low complexity region	236	252	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 94.8%

Validation Efficiency

100% (61/61)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Golgi reassembly stacking protein family. These proteins may play a role in the stacking of Golgi cisternae and Golgi ribbon formation, as well as Golgi fragmentation during apoptosis or mitosis. The encoded protein also plays a role in the intracellular transport of transforming growth factor alpha and may function as a molecular chaperone. A pseudogene of this gene is located on the short arm of chromosome 2. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam39	T	C	8: 41,279,718 (GRCm39)	V703A	probably benign	Het
Adgrv1	T	A	13: 81,562,702 (GRCm39)	Q5389L	probably damaging	Het
Aldh18a1	A	T	19: 40,566,122 (GRCm39)	I42N	possibly damaging	Het
Ankrd28	A	C	14: 31,432,821 (GRCm39)	C575W	probably damaging	Het
Car14	T	A	3: 95,805,487 (GRCm39)	T329S	possibly damaging	Het
Cdhr2	T	C	13: 54,884,359 (GRCm39)	F1298S	probably damaging	Het
Crhr2	A	G	6: 55,070,028 (GRCm39)	I341T	probably benign	Het
D5Ertd579e	T	A	5: 36,773,580 (GRCm39)		probably null	Het
Eif1ad3	A	G	12: 87,843,770 (GRCm39)	E139G	unknown	Het
Emilin1	A	G	5: 31,075,562 (GRCm39)	E601G	probably damaging	Het
Erbin	T	A	13: 103,982,073 (GRCm39)	Q456L	probably damaging	Het
Glp1r	T	C	17: 31,151,618 (GRCm39)	V405A	probably benign	Het
Gm10220	C	G	5: 26,325,303 (GRCm39)		probably null	Het
Gm527	A	T	12: 64,970,322 (GRCm39)	H219L	possibly damaging	Het
H2-DMa	T	A	17: 34,356,958 (GRCm39)	L152H	probably damaging	Het
Hsd3b7	T	A	7: 127,400,709 (GRCm39)	H54Q	probably damaging	Het
Hspa12b	T	C	2: 130,978,986 (GRCm39)		probably benign	Het
Iars1	C	A	13: 49,880,619 (GRCm39)	T1006K	possibly damaging	Het
Jmjd1c	T	C	10: 67,061,718 (GRCm39)	V1357A	probably benign	Het
Magi3	T	C	3: 103,958,268 (GRCm39)	M606V	probably damaging	Het
Mia	T	C	7: 26,880,403 (GRCm39)	D24G	probably benign	Het
Mon2	A	T	10: 122,849,409 (GRCm39)	L1297Q	probably damaging	Het
Musk	T	A	4: 58,373,171 (GRCm39)	S691T	possibly damaging	Het
Myo5c	A	T	9: 75,203,294 (GRCm39)	E1463D	possibly damaging	Het
Ndufs6	C	T	13: 73,468,438 (GRCm39)	G87D	probably damaging	Het
Npnt	C	T	3: 132,610,479 (GRCm39)	V415I	probably benign	Het
Ntsr2	A	G	12: 16,706,769 (GRCm39)	I266V	probably benign	Het
Or11j4	A	T	14: 50,630,845 (GRCm39)	I211F	possibly damaging	Het
Or5aq7	T	C	2: 86,938,778 (GRCm39)		probably benign	Het
Pkmyt1	T	A	17: 23,952,630 (GRCm39)		probably null	Het
Polr1e	T	C	4: 45,026,813 (GRCm39)	L166P	probably damaging	Het
Ppib	T	G	9: 65,968,756 (GRCm39)	F48C	probably damaging	Het
Ppl	C	A	16: 4,905,793 (GRCm39)	E1501*	probably null	Het
Prpf8	T	C	11: 75,382,321 (GRCm39)	V384A	probably benign	Het
Ptch1	T	G	13: 63,661,503 (GRCm39)	S1212R	probably damaging	Het
Ralb	C	A	1: 119,403,735 (GRCm39)	D131Y	probably damaging	Het
Rfx4	T	A	10: 84,680,099 (GRCm39)	M141K	probably damaging	Het
Rgl2	T	A	17: 34,156,105 (GRCm39)		probably null	Het
Rpl27	A	G	11: 101,334,782 (GRCm39)		probably benign	Het
Sdc1	A	C	12: 8,841,297 (GRCm39)	T213P	probably damaging	Het
Setx	T	A	2: 29,061,360 (GRCm39)	N2256K	possibly damaging	Het
Shank2	A	G	7: 143,585,034 (GRCm39)	M12V	probably benign	Het
Slc22a28	T	A	19: 8,049,253 (GRCm39)	K332M	probably damaging	Het
Slf2	A	T	19: 44,923,864 (GRCm39)	H226L	probably benign	Het
Tbc1d10b	T	C	7: 126,802,584 (GRCm39)	S362G	probably benign	Het
Tbxas1	G	A	6: 38,929,046 (GRCm39)		probably benign	Het
Tctn1	A	G	5: 122,399,575 (GRCm39)	V83A	probably damaging	Het
Tgm4	A	G	9: 122,885,583 (GRCm39)	E375G	probably damaging	Het
Tmeff2	T	A	1: 51,172,273 (GRCm39)	Y247*	probably null	Het
Tmem167b	C	T	3: 108,466,211 (GRCm39)	R79H	possibly damaging	Het
Tmprss7	T	G	16: 45,489,936 (GRCm39)	M429L	probably benign	Het
Tnfsf18	T	A	1: 161,331,148 (GRCm39)	D99E	probably benign	Het
Tnrc18	A	T	5: 142,713,736 (GRCm39)	S2534T	probably damaging	Het
Tnxb	A	G	17: 34,897,968 (GRCm39)	E872G	probably damaging	Het
Tomm40l	C	T	1: 171,047,206 (GRCm39)	V237I	possibly damaging	Het
Trbv2	A	G	6: 41,024,836 (GRCm39)	Q84R	probably benign	Het
Tspan18	T	C	2: 93,040,219 (GRCm39)	R179G	probably benign	Het
Tspan8	G	T	10: 115,669,132 (GRCm39)	V56L	probably benign	Het
Zbtb22	T	C	17: 34,137,711 (GRCm39)	S619P	probably damaging	Het
Zfp2	A	T	11: 50,791,428 (GRCm39)	I205N	probably damaging	Het
Zfpm1	A	G	8: 123,063,850 (GRCm39)		probably benign	Het

Other mutations in Gorasp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00928:Gorasp2	APN	2	70,521,208 (GRCm39)	missense	probably benign
IGL01108:Gorasp2	APN	2	70,508,922 (GRCm39)	missense	probably damaging	1.00
IGL01611:Gorasp2	APN	2	70,519,604 (GRCm39)	missense	possibly damaging	0.87
IGL02472:Gorasp2	APN	2	70,506,803 (GRCm39)	splice site	probably benign
IGL02794:Gorasp2	APN	2	70,509,838 (GRCm39)	nonsense	probably null
IGL03132:Gorasp2	APN	2	70,514,379 (GRCm39)	missense	probably benign	0.24
IGL03369:Gorasp2	APN	2	70,513,336 (GRCm39)	missense	probably damaging	1.00
R0049:Gorasp2	UTSW	2	70,521,067 (GRCm39)	missense	possibly damaging	0.83
R0049:Gorasp2	UTSW	2	70,521,067 (GRCm39)	missense	possibly damaging	0.83
R0846:Gorasp2	UTSW	2	70,521,298 (GRCm39)	missense	probably benign	0.01
R1112:Gorasp2	UTSW	2	70,521,158 (GRCm39)	missense	probably benign	0.00
R1168:Gorasp2	UTSW	2	70,518,744 (GRCm39)	missense	probably damaging	1.00
R1862:Gorasp2	UTSW	2	70,509,808 (GRCm39)	missense	probably damaging	1.00
R4062:Gorasp2	UTSW	2	70,509,857 (GRCm39)	missense	probably damaging	1.00
R4636:Gorasp2	UTSW	2	70,509,836 (GRCm39)	missense	probably damaging	1.00
R4911:Gorasp2	UTSW	2	70,518,683 (GRCm39)	intron	probably benign
R5215:Gorasp2	UTSW	2	70,519,598 (GRCm39)	missense	probably benign	0.04
R5473:Gorasp2	UTSW	2	70,508,950 (GRCm39)	missense	probably damaging	0.97
R6005:Gorasp2	UTSW	2	70,521,095 (GRCm39)	missense	probably benign	0.01
R6220:Gorasp2	UTSW	2	70,521,134 (GRCm39)	missense	probably damaging	1.00
R7225:Gorasp2	UTSW	2	70,514,391 (GRCm39)	missense	probably damaging	0.98
R7278:Gorasp2	UTSW	2	70,509,849 (GRCm39)	missense	probably damaging	0.96
R7895:Gorasp2	UTSW	2	70,514,442 (GRCm39)	missense	probably benign	0.00
R9421:Gorasp2	UTSW	2	70,509,867 (GRCm39)	missense	probably damaging	1.00
R9440:Gorasp2	UTSW	2	70,541,469 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GCCATTACATTAAGAGTCCCTGTAATG -3'
(R):5'- TAAGAGCTTTAGATTAGACGGAGAC -3'

Sequencing Primer
(F):5'- TAAGAGTCCCTGTAATGCATGGC -3'
(R):5'- CAGAATCTCACTGTGTAGGCTTGAC -3'

Posted On

2018-04-27