Mutagenetix > Incidental Mutation

Incidental Mutation 'R6341:Zc3h15'

514366

Institutional Source

Beutler Lab

Gene Symbol

Zc3h15

Ensembl Gene

ENSMUSG00000027091

Gene Name

zinc finger CCCH-type containing 15

Synonyms

1810012H02Rik, FM22, 1700006A17Rik, 2610312B22Rik, Ierepo4

MMRRC Submission

044495-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.492) question?

Stock #

R6341 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

83474922-83494961 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 83491567 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 265 (E265G)

Ref Sequence

ENSEMBL: ENSMUSP00000080301 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081591]

AlphaFold

Q3TIV5

Predicted Effect

probably benign
Transcript: ENSMUST00000081591
AA Change: E265G

PolyPhen 2 Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000080301
Gene: ENSMUSG00000027091
AA Change: E265G

Domain	Start	End	E-Value	Type
low complexity region	4	27	N/A	INTRINSIC
coiled coil region	60	86	N/A	INTRINSIC
ZnF_C3H1	99	125	7.84e-8	SMART
ZnF_C3H1	175	211	3.81e0	SMART
Pfam:DFRP_C	229	336	4.2e-23	PFAM
low complexity region	410	426	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125422

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130948

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134789

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140086

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145099

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acap2	T	C	16: 30,924,364 (GRCm39)	D658G	possibly damaging	Het
Amz2	A	G	11: 109,319,653 (GRCm39)	H13R	probably benign	Het
Ankrd27	G	T	7: 35,326,828 (GRCm39)		probably null	Het
Atp8a1	T	C	5: 67,840,270 (GRCm39)	T704A	possibly damaging	Het
Cabin1	A	T	10: 75,494,573 (GRCm39)	M1602K	probably damaging	Het
Ccdc74a	T	C	16: 17,465,978 (GRCm39)	S105P	probably damaging	Het
Cdh26	T	A	2: 178,113,366 (GRCm39)		probably null	Het
Cxcl10	T	C	5: 92,496,072 (GRCm39)	I22V	probably benign	Het
Cyp2c68	A	C	19: 39,700,933 (GRCm39)	V295G	possibly damaging	Het
Ddx10	A	T	9: 53,115,551 (GRCm39)	D594E	probably benign	Het
Ddx5	T	C	11: 106,676,368 (GRCm39)		probably null	Het
Duox1	T	C	2: 122,168,202 (GRCm39)	I1109T	probably damaging	Het
Dusp15	T	C	2: 152,788,204 (GRCm39)		probably null	Het
Ecel1	A	G	1: 87,078,193 (GRCm39)		probably null	Het
Efcab6	T	G	15: 83,820,139 (GRCm39)	Q714P	possibly damaging	Het
Erc1	A	G	6: 119,754,959 (GRCm39)	L464P	possibly damaging	Het
Fam234a	T	A	17: 26,432,667 (GRCm39)	H494L	probably damaging	Het
Gfpt1	T	C	6: 87,065,127 (GRCm39)	V694A	probably damaging	Het
Gli2	T	C	1: 118,763,954 (GRCm39)	D1399G	probably damaging	Het
Gm10110	T	C	14: 90,134,144 (GRCm39)		noncoding transcript	Het
Hdac3	A	G	18: 38,077,217 (GRCm39)	L219P	probably damaging	Het
Hlcs	A	G	16: 94,032,022 (GRCm39)	F52S	probably damaging	Het
Ints7	C	A	1: 191,345,239 (GRCm39)	T643K	probably damaging	Het
Ireb2	A	G	9: 54,816,064 (GRCm39)	I878M	probably damaging	Het
Itga3	A	T	11: 94,946,677 (GRCm39)		probably null	Het
Lrfn5	T	A	12: 61,890,368 (GRCm39)	Y552*	probably null	Het
Mafb	T	C	2: 160,208,371 (GRCm39)	T76A	probably damaging	Het
Man2b1	A	T	8: 85,822,028 (GRCm39)	S748C	probably damaging	Het
Mmp15	G	T	8: 96,092,091 (GRCm39)		probably null	Het
Mmp17	A	T	5: 129,679,019 (GRCm39)	R335W	probably damaging	Het
Muc5ac	A	T	7: 141,355,229 (GRCm39)	D1005V	probably damaging	Het
Myh3	T	C	11: 66,973,822 (GRCm39)	F165S	probably benign	Het
Nacc1	T	C	8: 85,401,420 (GRCm39)	D419G	probably benign	Het
Neb	G	A	2: 52,099,486 (GRCm39)	S4545L	probably damaging	Het
Niban3	C	T	8: 72,052,721 (GRCm39)	P65L	probably damaging	Het
Npas2	T	C	1: 39,339,768 (GRCm39)	I106T	probably damaging	Het
Ogfrl1	T	G	1: 23,408,944 (GRCm39)	K427N	probably benign	Het
Or5b12	T	C	19: 12,896,843 (GRCm39)	T277A	probably benign	Het
Pde4dip	T	A	3: 97,602,227 (GRCm39)	Q2283L	probably benign	Het
Phax	C	T	18: 56,706,173 (GRCm39)	T21M	possibly damaging	Het
Pitpnm1	A	T	19: 4,152,829 (GRCm39)	K79*	probably null	Het
Pkd1	T	A	17: 24,799,201 (GRCm39)	F2807I	probably damaging	Het
Plekha4	C	T	7: 45,190,572 (GRCm39)	R427C	probably damaging	Het
Ptprj	A	T	2: 90,288,693 (GRCm39)	F757L	probably benign	Het
Rad1	A	G	15: 10,492,907 (GRCm39)	D208G	probably damaging	Het
Rangrf	T	A	11: 68,863,538 (GRCm39)	N156I	probably benign	Het
Rasl11b	T	C	5: 74,359,037 (GRCm39)	S181P	probably damaging	Het
Rigi	T	A	4: 40,222,199 (GRCm39)		probably null	Het
Rlf	G	A	4: 121,006,557 (GRCm39)	Q808*	probably null	Het
Rogdi	G	T	16: 4,831,241 (GRCm39)		probably null	Het
Sec24a	A	T	11: 51,608,603 (GRCm39)	V573D	probably damaging	Het
Sorbs2	A	G	8: 46,223,615 (GRCm39)	T200A	probably damaging	Het
Srgap2	C	T	1: 131,219,367 (GRCm39)	R259H	probably benign	Het
Ssc5d	T	A	7: 4,939,664 (GRCm39)	V700E	probably benign	Het
Stt3a	A	T	9: 36,662,592 (GRCm39)	H222Q	probably damaging	Het
Tcaf3	A	T	6: 42,574,193 (GRCm39)	D6E	possibly damaging	Het
Tdrd12	C	T	7: 35,189,473 (GRCm39)	R421H	probably damaging	Het
Top3b	T	C	16: 16,696,935 (GRCm39)	M62T	probably damaging	Het
Trhr	T	G	15: 44,092,694 (GRCm39)	Y310*	probably null	Het
Urb2	G	T	8: 124,757,864 (GRCm39)	E1190D	probably damaging	Het
Usp34	A	G	11: 23,331,353 (GRCm39)	T1085A	probably damaging	Het
Vmn1r179	T	A	7: 23,628,491 (GRCm39)	H227Q	possibly damaging	Het
Vmn1r31	A	T	6: 58,448,995 (GRCm39)	M290K	probably benign	Het
Wdr75	T	C	1: 45,841,291 (GRCm39)		probably null	Het
Wnk1	A	T	6: 119,925,546 (GRCm39)	V1306D	probably damaging	Het
Xkr4	T	C	1: 3,741,001 (GRCm39)	T191A	probably benign	Het
Zcchc9	A	G	13: 91,948,816 (GRCm39)	F41S	possibly damaging	Het
Zfp251	T	C	15: 76,738,337 (GRCm39)	H247R	probably damaging	Het
Zfp433	A	G	10: 81,555,957 (GRCm39)	E152G	probably damaging	Het
Zfp770	A	T	2: 114,027,240 (GRCm39)	S276R	probably benign	Het

Other mutations in Zc3h15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01619:Zc3h15	APN	2	83,490,517 (GRCm39)	missense	probably damaging	1.00
IGL01688:Zc3h15	APN	2	83,492,536 (GRCm39)	missense	probably damaging	0.99
IGL01951:Zc3h15	APN	2	83,491,829 (GRCm39)	missense	probably damaging	1.00
IGL02514:Zc3h15	APN	2	83,483,725 (GRCm39)	missense	probably damaging	1.00
IGL02852:Zc3h15	APN	2	83,475,015 (GRCm39)	missense	possibly damaging	0.85
IGL03075:Zc3h15	APN	2	83,492,535 (GRCm39)	missense	possibly damaging	0.95
IGL03055:Zc3h15	UTSW	2	83,491,515 (GRCm39)	missense	possibly damaging	0.90
R0117:Zc3h15	UTSW	2	83,488,427 (GRCm39)	missense	possibly damaging	0.51
R0465:Zc3h15	UTSW	2	83,494,159 (GRCm39)	splice site	probably benign
R1711:Zc3h15	UTSW	2	83,491,492 (GRCm39)	missense	probably benign	0.03
R1861:Zc3h15	UTSW	2	83,494,334 (GRCm39)	missense	unknown
R2258:Zc3h15	UTSW	2	83,487,360 (GRCm39)	missense	probably benign	0.00
R2325:Zc3h15	UTSW	2	83,483,783 (GRCm39)	missense	probably damaging	1.00
R4152:Zc3h15	UTSW	2	83,488,913 (GRCm39)	missense	probably benign	0.06
R4154:Zc3h15	UTSW	2	83,488,913 (GRCm39)	missense	probably benign	0.06
R4420:Zc3h15	UTSW	2	83,488,356 (GRCm39)	missense	probably damaging	0.97
R5384:Zc3h15	UTSW	2	83,490,574 (GRCm39)	missense	possibly damaging	0.55
R6544:Zc3h15	UTSW	2	83,491,492 (GRCm39)	missense	probably benign	0.03
R6923:Zc3h15	UTSW	2	83,487,400 (GRCm39)	missense	possibly damaging	0.68
R7770:Zc3h15	UTSW	2	83,488,476 (GRCm39)	missense	possibly damaging	0.49
R8782:Zc3h15	UTSW	2	83,491,787 (GRCm39)	missense	probably benign	0.14

Predicted Primers

PCR Primer
(F):5'- TTGCCGTGCAAAGAGAAAGC -3'
(R):5'- CAAATATCTCAGGGAAATGCTAGC -3'

Sequencing Primer
(F):5'- ATTTAGTCTACTATCTTAGGGTGGCC -3'
(R):5'- GGGAAATGCTAGCATTCATTTTAGAC -3'

Posted On

2018-04-27