Mutagenetix > Incidental Mutation

Incidental Mutation 'R6408:Rnf26rt'

514534

Institutional Source

Beutler Lab

Gene Symbol

Rnf26rt

Ensembl Gene

ENSMUSG00000072476

Gene Name

ring finger protein 26, retrotransposed

Synonyms

Gm9008

MMRRC Submission

044553-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.183) question?

Stock #

R6408 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

76472428-76474716 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 76473441 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Arginine at position 392 (C392R)

Ref Sequence

ENSEMBL: ENSMUSP00000126976 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097218]

AlphaFold

E9PVG0

Predicted Effect

probably damaging
Transcript: ENSMUST00000097218
AA Change: C392R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000126976
Gene: ENSMUSG00000072476
AA Change: C392R

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
transmembrane domain	55	77	N/A	INTRINSIC
transmembrane domain	148	170	N/A	INTRINSIC
transmembrane domain	183	205	N/A	INTRINSIC
low complexity region	208	221	N/A	INTRINSIC
transmembrane domain	225	247	N/A	INTRINSIC
low complexity region	301	316	N/A	INTRINSIC
RING	371	412	8.29e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204070

Meta Mutation Damage Score

0.9434

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.2%

Validation Efficiency

94% (45/48)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700028K03Rik	T	C	5: 107,691,858 (GRCm39)	S50P	probably damaging	Het
4930407I10Rik	T	C	15: 81,949,307 (GRCm39)	V1068A	possibly damaging	Het
Acss1	A	G	2: 150,470,412 (GRCm39)		probably null	Het
Amer2	T	C	14: 60,617,674 (GRCm39)	I497T	probably damaging	Het
Azi2	A	T	9: 117,890,550 (GRCm39)	R51*	probably null	Het
Brdt	A	G	5: 107,533,358 (GRCm39)	D946G	probably damaging	Het
Bzw2	C	T	12: 36,157,524 (GRCm39)	V314I	possibly damaging	Het
Capn13	A	T	17: 73,672,954 (GRCm39)	Y116*	probably null	Het
Clca4b	A	G	3: 144,625,036 (GRCm39)	I485T	probably benign	Het
Crybg3	T	A	16: 59,316,053 (GRCm39)	T1130S	possibly damaging	Het
Cubn	C	T	2: 13,299,014 (GRCm39)	V3220M	probably damaging	Het
Cyp4f16	T	A	17: 32,770,173 (GRCm39)	L514Q	probably damaging	Het
D7Ertd443e	G	T	7: 133,951,440 (GRCm39)	Q31K	probably benign	Het
Dcaf15	T	C	8: 84,831,355 (GRCm39)	E8G	probably benign	Het
Ddx24	A	C	12: 103,391,819 (GRCm39)		probably benign	Het
Diaph3	T	C	14: 87,066,430 (GRCm39)	M988V	possibly damaging	Het
Dlx4	A	G	11: 95,036,078 (GRCm39)	V77A	probably benign	Het
Dnah3	T	C	7: 119,522,191 (GRCm39)		probably null	Het
Drc1	A	G	5: 30,513,632 (GRCm39)	E396G	probably benign	Het
Gab1	C	A	8: 81,515,226 (GRCm39)	R364L	possibly damaging	Het
Gbp2b	T	C	3: 142,323,899 (GRCm39)	L568S	probably benign	Het
Gjb5	A	T	4: 127,249,940 (GRCm39)	F68Y	probably benign	Het
Hs6st3	C	A	14: 119,376,046 (GRCm39)	P74T	probably benign	Het
Kif26b	T	C	1: 178,745,133 (GRCm39)	L1743P	probably damaging	Het
Lnx1	A	T	5: 74,846,307 (GRCm39)	C48S	probably damaging	Het
Lrfn2	A	G	17: 49,377,654 (GRCm39)	H245R	probably damaging	Het
Lrrc27	A	G	7: 138,798,184 (GRCm39)	E93G	probably benign	Het
Mettl6	T	C	14: 31,201,683 (GRCm39)	E253G	probably damaging	Het
Nmu	A	T	5: 76,491,818 (GRCm39)	F106Y	probably damaging	Het
Pcsk7	T	C	9: 45,820,994 (GRCm39)	I142T	probably benign	Het
Polr3a	A	T	14: 24,536,939 (GRCm39)		probably null	Het
Psmb9	G	T	17: 34,404,707 (GRCm39)	A19E	probably damaging	Het
Pus7l	A	G	15: 94,429,456 (GRCm39)	M454T	probably benign	Het
Raet1e	A	G	10: 22,056,645 (GRCm39)	T74A	probably benign	Het
Ralb	A	C	1: 119,405,839 (GRCm39)	Y43*	probably null	Het
Ralgapa1	C	A	12: 55,730,695 (GRCm39)	E1947*	probably null	Het
Robo1	T	C	16: 72,768,934 (GRCm39)	Y500H	probably benign	Het
Shroom1	A	C	11: 53,354,214 (GRCm39)	T45P	probably benign	Het
Slit2	A	G	5: 48,142,328 (GRCm39)		probably benign	Het
Spmip2	A	G	3: 79,356,706 (GRCm39)	R170G	probably benign	Het
Srgap3	T	C	6: 112,699,967 (GRCm39)	S1004G	probably damaging	Het
Taok2	A	G	7: 126,470,164 (GRCm39)	V888A	probably benign	Het
Tbc1d8	T	A	1: 39,441,980 (GRCm39)	D204V	probably damaging	Het
Thoc2l	A	G	5: 104,666,643 (GRCm39)	I388M	probably benign	Het
Trav7d-4	C	A	14: 53,007,624 (GRCm39)	A39D	probably damaging	Het
Ush2a	G	T	1: 187,999,229 (GRCm39)	E180*	probably null	Het
Vmn1r37	A	G	6: 66,708,563 (GRCm39)	D63G	probably benign	Het
Zfp282	G	A	6: 47,857,319 (GRCm39)	R184Q	probably damaging	Het

Other mutations in Rnf26rt

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0322:Rnf26rt	UTSW	6	76,473,401 (GRCm39)	missense	probably benign	0.14
R0943:Rnf26rt	UTSW	6	76,473,398 (GRCm39)	missense	probably benign	0.09
R1767:Rnf26rt	UTSW	6	76,474,588 (GRCm39)	missense	unknown
R1807:Rnf26rt	UTSW	6	76,474,397 (GRCm39)	missense	probably benign	0.09
R3773:Rnf26rt	UTSW	6	76,473,942 (GRCm39)	missense	probably benign	0.00
R4515:Rnf26rt	UTSW	6	76,473,792 (GRCm39)	missense	probably benign	0.00
R7686:Rnf26rt	UTSW	6	76,474,013 (GRCm39)	missense	probably damaging	1.00
R8162:Rnf26rt	UTSW	6	76,473,558 (GRCm39)	missense	probably benign	0.04
R9192:Rnf26rt	UTSW	6	76,473,566 (GRCm39)	missense	probably benign	0.00
R9467:Rnf26rt	UTSW	6	76,473,615 (GRCm39)	missense	probably benign	0.04
R9607:Rnf26rt	UTSW	6	76,473,923 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CCTGGATATATGGCTTGAGGC -3'
(R):5'- ACTCCTCCTGAAGCAGAAGAG -3'

Sequencing Primer
(F):5'- TCAGGCCAGAACCCAGAGG -3'
(R):5'- CTCCTGAAGCAGAAGAGGAGGTC -3'

Posted On

2018-05-04