Incidental Mutation 'R6408:Cyp4f16'
ID |
514560 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Cyp4f16
|
Ensembl Gene |
ENSMUSG00000048440 |
Gene Name |
cytochrome P450, family 4, subfamily f, polypeptide 16 |
Synonyms |
2310021J05Rik |
MMRRC Submission |
044553-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R6408 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
32755532-32770772 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 32770173 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Glutamine
at position 514
(L514Q)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000131058
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003416]
[ENSMUST00000165515]
[ENSMUST00000169252]
[ENSMUST00000169591]
|
AlphaFold |
Q99N17 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000003416
AA Change: L514Q
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000003416 Gene: ENSMUSG00000048440 AA Change: L514Q
Domain | Start | End | E-Value | Type |
Pfam:p450
|
52 |
515 |
4.7e-133 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000165515
|
SMART Domains |
Protein: ENSMUSP00000126845 Gene: ENSMUSG00000048440
Domain | Start | End | E-Value | Type |
transmembrane domain
|
15 |
37 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000168285
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000168346
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000169252
|
SMART Domains |
Protein: ENSMUSP00000128349 Gene: ENSMUSG00000048440
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
36 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000169591
AA Change: L514Q
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000131058 Gene: ENSMUSG00000048440 AA Change: L514Q
Domain | Start | End | E-Value | Type |
Pfam:p450
|
52 |
515 |
4.7e-133 |
PFAM |
|
Meta Mutation Damage Score |
0.7492 |
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.3%
- 20x: 97.2%
|
Validation Efficiency |
94% (45/48) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 48 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700028K03Rik |
T |
C |
5: 107,691,858 (GRCm39) |
S50P |
probably damaging |
Het |
4930407I10Rik |
T |
C |
15: 81,949,307 (GRCm39) |
V1068A |
possibly damaging |
Het |
Acss1 |
A |
G |
2: 150,470,412 (GRCm39) |
|
probably null |
Het |
Amer2 |
T |
C |
14: 60,617,674 (GRCm39) |
I497T |
probably damaging |
Het |
Azi2 |
A |
T |
9: 117,890,550 (GRCm39) |
R51* |
probably null |
Het |
Brdt |
A |
G |
5: 107,533,358 (GRCm39) |
D946G |
probably damaging |
Het |
Bzw2 |
C |
T |
12: 36,157,524 (GRCm39) |
V314I |
possibly damaging |
Het |
Capn13 |
A |
T |
17: 73,672,954 (GRCm39) |
Y116* |
probably null |
Het |
Clca4b |
A |
G |
3: 144,625,036 (GRCm39) |
I485T |
probably benign |
Het |
Crybg3 |
T |
A |
16: 59,316,053 (GRCm39) |
T1130S |
possibly damaging |
Het |
Cubn |
C |
T |
2: 13,299,014 (GRCm39) |
V3220M |
probably damaging |
Het |
D7Ertd443e |
G |
T |
7: 133,951,440 (GRCm39) |
Q31K |
probably benign |
Het |
Dcaf15 |
T |
C |
8: 84,831,355 (GRCm39) |
E8G |
probably benign |
Het |
Ddx24 |
A |
C |
12: 103,391,819 (GRCm39) |
|
probably benign |
Het |
Diaph3 |
T |
C |
14: 87,066,430 (GRCm39) |
M988V |
possibly damaging |
Het |
Dlx4 |
A |
G |
11: 95,036,078 (GRCm39) |
V77A |
probably benign |
Het |
Dnah3 |
T |
C |
7: 119,522,191 (GRCm39) |
|
probably null |
Het |
Drc1 |
A |
G |
5: 30,513,632 (GRCm39) |
E396G |
probably benign |
Het |
Gab1 |
C |
A |
8: 81,515,226 (GRCm39) |
R364L |
possibly damaging |
Het |
Gbp2b |
T |
C |
3: 142,323,899 (GRCm39) |
L568S |
probably benign |
Het |
Gjb5 |
A |
T |
4: 127,249,940 (GRCm39) |
F68Y |
probably benign |
Het |
Hs6st3 |
C |
A |
14: 119,376,046 (GRCm39) |
P74T |
probably benign |
Het |
Kif26b |
T |
C |
1: 178,745,133 (GRCm39) |
L1743P |
probably damaging |
Het |
Lnx1 |
A |
T |
5: 74,846,307 (GRCm39) |
C48S |
probably damaging |
Het |
Lrfn2 |
A |
G |
17: 49,377,654 (GRCm39) |
H245R |
probably damaging |
Het |
Lrrc27 |
A |
G |
7: 138,798,184 (GRCm39) |
E93G |
probably benign |
Het |
Mettl6 |
T |
C |
14: 31,201,683 (GRCm39) |
E253G |
probably damaging |
Het |
Nmu |
A |
T |
5: 76,491,818 (GRCm39) |
F106Y |
probably damaging |
Het |
Pcsk7 |
T |
C |
9: 45,820,994 (GRCm39) |
I142T |
probably benign |
Het |
Polr3a |
A |
T |
14: 24,536,939 (GRCm39) |
|
probably null |
Het |
Psmb9 |
G |
T |
17: 34,404,707 (GRCm39) |
A19E |
probably damaging |
Het |
Pus7l |
A |
G |
15: 94,429,456 (GRCm39) |
M454T |
probably benign |
Het |
Raet1e |
A |
G |
10: 22,056,645 (GRCm39) |
T74A |
probably benign |
Het |
Ralb |
A |
C |
1: 119,405,839 (GRCm39) |
Y43* |
probably null |
Het |
Ralgapa1 |
C |
A |
12: 55,730,695 (GRCm39) |
E1947* |
probably null |
Het |
Rnf26rt |
A |
G |
6: 76,473,441 (GRCm39) |
C392R |
probably damaging |
Het |
Robo1 |
T |
C |
16: 72,768,934 (GRCm39) |
Y500H |
probably benign |
Het |
Shroom1 |
A |
C |
11: 53,354,214 (GRCm39) |
T45P |
probably benign |
Het |
Slit2 |
A |
G |
5: 48,142,328 (GRCm39) |
|
probably benign |
Het |
Spmip2 |
A |
G |
3: 79,356,706 (GRCm39) |
R170G |
probably benign |
Het |
Srgap3 |
T |
C |
6: 112,699,967 (GRCm39) |
S1004G |
probably damaging |
Het |
Taok2 |
A |
G |
7: 126,470,164 (GRCm39) |
V888A |
probably benign |
Het |
Tbc1d8 |
T |
A |
1: 39,441,980 (GRCm39) |
D204V |
probably damaging |
Het |
Thoc2l |
A |
G |
5: 104,666,643 (GRCm39) |
I388M |
probably benign |
Het |
Trav7d-4 |
C |
A |
14: 53,007,624 (GRCm39) |
A39D |
probably damaging |
Het |
Ush2a |
G |
T |
1: 187,999,229 (GRCm39) |
E180* |
probably null |
Het |
Vmn1r37 |
A |
G |
6: 66,708,563 (GRCm39) |
D63G |
probably benign |
Het |
Zfp282 |
G |
A |
6: 47,857,319 (GRCm39) |
R184Q |
probably damaging |
Het |
|
Other mutations in Cyp4f16 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02941:Cyp4f16
|
APN |
17 |
32,756,061 (GRCm39) |
missense |
possibly damaging |
0.75 |
IGL03400:Cyp4f16
|
APN |
17 |
32,769,327 (GRCm39) |
missense |
probably benign |
0.00 |
R0437:Cyp4f16
|
UTSW |
17 |
32,756,072 (GRCm39) |
missense |
possibly damaging |
0.46 |
R0454:Cyp4f16
|
UTSW |
17 |
32,756,061 (GRCm39) |
missense |
probably damaging |
0.97 |
R0482:Cyp4f16
|
UTSW |
17 |
32,769,525 (GRCm39) |
missense |
probably damaging |
1.00 |
R1422:Cyp4f16
|
UTSW |
17 |
32,761,973 (GRCm39) |
missense |
probably damaging |
0.99 |
R1435:Cyp4f16
|
UTSW |
17 |
32,769,708 (GRCm39) |
nonsense |
probably null |
|
R1440:Cyp4f16
|
UTSW |
17 |
32,769,708 (GRCm39) |
nonsense |
probably null |
|
R1616:Cyp4f16
|
UTSW |
17 |
32,761,942 (GRCm39) |
nonsense |
probably null |
|
R1840:Cyp4f16
|
UTSW |
17 |
32,761,980 (GRCm39) |
critical splice donor site |
probably null |
|
R1854:Cyp4f16
|
UTSW |
17 |
32,756,073 (GRCm39) |
missense |
probably damaging |
0.99 |
R1912:Cyp4f16
|
UTSW |
17 |
32,764,018 (GRCm39) |
missense |
probably damaging |
0.99 |
R2200:Cyp4f16
|
UTSW |
17 |
32,756,078 (GRCm39) |
missense |
probably damaging |
0.98 |
R3803:Cyp4f16
|
UTSW |
17 |
32,763,858 (GRCm39) |
missense |
possibly damaging |
0.96 |
R4811:Cyp4f16
|
UTSW |
17 |
32,764,080 (GRCm39) |
missense |
probably benign |
|
R4812:Cyp4f16
|
UTSW |
17 |
32,765,652 (GRCm39) |
missense |
probably null |
1.00 |
R4837:Cyp4f16
|
UTSW |
17 |
32,761,738 (GRCm39) |
missense |
possibly damaging |
0.59 |
R4867:Cyp4f16
|
UTSW |
17 |
32,769,724 (GRCm39) |
missense |
possibly damaging |
0.94 |
R4909:Cyp4f16
|
UTSW |
17 |
32,769,295 (GRCm39) |
missense |
possibly damaging |
0.46 |
R5857:Cyp4f16
|
UTSW |
17 |
32,755,998 (GRCm39) |
missense |
probably damaging |
1.00 |
R5986:Cyp4f16
|
UTSW |
17 |
32,763,116 (GRCm39) |
missense |
probably benign |
0.45 |
R6013:Cyp4f16
|
UTSW |
17 |
32,765,652 (GRCm39) |
missense |
probably null |
1.00 |
R6651:Cyp4f16
|
UTSW |
17 |
32,763,118 (GRCm39) |
missense |
probably benign |
0.00 |
R7463:Cyp4f16
|
UTSW |
17 |
32,769,761 (GRCm39) |
missense |
possibly damaging |
0.89 |
R7923:Cyp4f16
|
UTSW |
17 |
32,765,721 (GRCm39) |
missense |
possibly damaging |
0.67 |
R9622:Cyp4f16
|
UTSW |
17 |
32,769,246 (GRCm39) |
missense |
probably damaging |
1.00 |
RF005:Cyp4f16
|
UTSW |
17 |
32,764,169 (GRCm39) |
splice site |
probably null |
|
X0017:Cyp4f16
|
UTSW |
17 |
32,763,910 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- TGTCTAGGCACTGCACAGAG -3'
(R):5'- ACTCTTCATCAGTCTGCAGGC -3'
Sequencing Primer
(F):5'- TGCACAGAGTCCCCATCCTG -3'
(R):5'- CAGAAAGGCCCTTGGACTCAG -3'
|
Posted On |
2018-05-04 |