Incidental Mutation 'R6409:Or1x2'
| ID |
514784 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or1x2
|
| Ensembl Gene |
ENSMUSG00000059397 |
| Gene Name |
olfactory receptor family 1 subfamily X member 2 |
| Synonyms |
GA_x6K02T2QP88-4411197-4410256, MOR126-1, Olfr54, F3 |
| MMRRC Submission |
044554-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.058)
|
| Stock # |
R6409 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
50917831-50918772 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 50918015 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tyrosine to Cysteine
at position 62
(Y62C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150809
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000072152]
[ENSMUST00000215409]
[ENSMUST00000217480]
|
| AlphaFold |
Q8VFE6 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000072152
AA Change: Y62C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000072016
Gene: ENSMUSG00000059397
AA Change: Y62C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
33 |
309 |
3e-57 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
37 |
306 |
8.8e-6 |
PFAM |
|
Pfam:7tm_1
|
43 |
291 |
2.7e-27 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000215409
AA Change: Y62C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000217480
AA Change: Y62C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| Meta Mutation Damage Score |
0.6467 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.5%
- 20x: 98.3%
|
| Validation Efficiency |
97% (32/33) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 35 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Aatk |
G |
T |
11: 119,902,558 (GRCm39) |
Q556K |
probably benign |
Het |
| Adgrf3 |
A |
G |
5: 30,402,312 (GRCm39) |
V572A |
probably damaging |
Het |
| Ahnak |
G |
A |
19: 8,986,938 (GRCm39) |
V2741M |
probably benign |
Het |
| Ascc3 |
T |
C |
10: 50,721,676 (GRCm39) |
V2043A |
probably benign |
Het |
| B3glct |
C |
T |
5: 149,658,916 (GRCm39) |
R239C |
probably benign |
Het |
| Cacna2d4 |
T |
A |
6: 119,259,189 (GRCm39) |
V626E |
probably damaging |
Het |
| Cdcp3 |
G |
A |
7: 130,863,800 (GRCm39) |
|
probably benign |
Het |
| Cfap54 |
T |
C |
10: 92,803,354 (GRCm39) |
N1563D |
probably benign |
Het |
| Duox2 |
G |
C |
2: 122,115,148 (GRCm39) |
H1110D |
probably damaging |
Het |
| Inppl1 |
A |
T |
7: 101,478,168 (GRCm39) |
F648I |
probably damaging |
Het |
| Mefv |
C |
A |
16: 3,528,657 (GRCm39) |
|
probably null |
Het |
| Ms4a4b |
T |
C |
19: 11,438,724 (GRCm39) |
|
probably null |
Het |
| Mtus2 |
T |
C |
5: 148,014,425 (GRCm39) |
V406A |
probably benign |
Het |
| Nup88 |
T |
C |
11: 70,835,798 (GRCm39) |
R554G |
probably null |
Het |
| Or4d10 |
C |
T |
19: 12,052,111 (GRCm39) |
|
probably benign |
Het |
| Or8h8 |
A |
T |
2: 86,753,515 (GRCm39) |
Y120* |
probably null |
Het |
| Pde10a |
A |
G |
17: 9,168,270 (GRCm39) |
D246G |
probably damaging |
Het |
| Pmm1 |
T |
C |
15: 81,845,008 (GRCm39) |
T9A |
probably benign |
Het |
| Pramel19 |
C |
T |
4: 101,797,874 (GRCm39) |
Q91* |
probably null |
Het |
| Psg18 |
T |
C |
7: 18,087,446 (GRCm39) |
M71V |
probably benign |
Het |
| Rapgef4 |
A |
G |
2: 72,008,581 (GRCm39) |
H253R |
probably benign |
Het |
| Rfc4 |
T |
C |
16: 22,932,823 (GRCm39) |
*371W |
probably null |
Het |
| Rgs18 |
T |
A |
1: 144,650,931 (GRCm39) |
K17* |
probably null |
Het |
| Rsrc1 |
C |
T |
3: 66,901,982 (GRCm39) |
P44L |
unknown |
Het |
| Sertm1 |
T |
C |
3: 54,806,788 (GRCm39) |
Y79C |
probably benign |
Het |
| Sfrp1 |
T |
C |
8: 23,907,394 (GRCm39) |
I198T |
possibly damaging |
Het |
| Slc15a2 |
T |
A |
16: 36,582,232 (GRCm39) |
I254F |
probably benign |
Het |
| Slc29a4 |
A |
G |
5: 142,697,826 (GRCm39) |
D93G |
probably damaging |
Het |
| Smo |
T |
C |
6: 29,736,113 (GRCm39) |
L35S |
unknown |
Het |
| Tbc1d8 |
A |
G |
1: 39,411,669 (GRCm39) |
S1056P |
probably benign |
Het |
| Ttll9 |
A |
G |
2: 152,841,261 (GRCm39) |
D286G |
probably damaging |
Het |
| Vmn2r14 |
A |
G |
5: 109,364,096 (GRCm39) |
Y607H |
probably benign |
Het |
| Vps8 |
T |
A |
16: 21,297,189 (GRCm39) |
C564S |
probably benign |
Het |
| Zc3h12d |
A |
G |
10: 7,743,082 (GRCm39) |
H284R |
probably benign |
Het |
| Zfp106 |
A |
T |
2: 120,362,585 (GRCm39) |
S79T |
probably damaging |
Het |
|
| Other mutations in Or1x2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01514:Or1x2
|
APN |
11 |
50,918,416 (GRCm39) |
nonsense |
probably null |
|
|
IGL01875:Or1x2
|
APN |
11 |
50,918,202 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01936:Or1x2
|
APN |
11 |
50,918,162 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02165:Or1x2
|
APN |
11 |
50,918,470 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02474:Or1x2
|
APN |
11 |
50,918,192 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02706:Or1x2
|
APN |
11 |
50,918,091 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02983:Or1x2
|
APN |
11 |
50,918,207 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03037:Or1x2
|
APN |
11 |
50,918,117 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03086:Or1x2
|
APN |
11 |
50,918,557 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0114:Or1x2
|
UTSW |
11 |
50,918,431 (GRCm39) |
missense |
probably benign |
0.34 |
|
R1201:Or1x2
|
UTSW |
11 |
50,917,937 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1353:Or1x2
|
UTSW |
11 |
50,917,833 (GRCm39) |
start codon destroyed |
probably null |
0.33 |
|
R1624:Or1x2
|
UTSW |
11 |
50,917,952 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1961:Or1x2
|
UTSW |
11 |
50,918,302 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5318:Or1x2
|
UTSW |
11 |
50,918,420 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5335:Or1x2
|
UTSW |
11 |
50,918,161 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7097:Or1x2
|
UTSW |
11 |
50,918,428 (GRCm39) |
missense |
probably benign |
0.09 |
|
R8243:Or1x2
|
UTSW |
11 |
50,918,138 (GRCm39) |
missense |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CCTGATCCTCTGGAAGATGTC -3'
(R):5'- TATGGCCACAAATCTGTCCAGG -3'
Sequencing Primer
(F):5'- TGTCCAAGGGGAGGGAGAATG -3'
(R):5'- AAATCTGTCCAGGGCCATG -3'
|
| Posted On |
2018-05-04 |
Incidental Mutation