Incidental Mutation 'R6400:Cd274'
| ID |
516144 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cd274
|
| Ensembl Gene |
ENSMUSG00000016496 |
| Gene Name |
CD274 antigen |
| Synonyms |
Pdcd1lg1, PD-L1, B7-H1 |
| MMRRC Submission |
044547-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6400 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
19 |
| Chromosomal Location |
29344855-29365495 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 29362808 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Methionine
at position 290
(T290M)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000016640
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000016640]
|
| AlphaFold |
Q9EP73 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000016640
AA Change: T290M
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000016640
Gene: ENSMUSG00000016496
AA Change: T290M
| Domain | Start | End | E-Value | Type |
|---|
|
IG
|
24 |
131 |
1.5e-7 |
SMART |
|
IG_like
|
138 |
226 |
4.78e1 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.8%
- 10x: 99.0%
- 20x: 96.2%
|
| Validation Efficiency |
100% (32/32) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene is an immune inhibitory receptor ligand that is expressed by hematopoietic and non-hematopoietic cells, such as T cells and B cells and various types of tumor cells. The encoded protein is a type I transmembrane protein that has immunoglobulin V-like and C-like domains. Interaction of this ligand with its receptor inhibits T-cell activation and cytokine production. During infection or inflammation of normal tissue, this interaction is important for preventing autoimmunity by maintaining homeostasis of the immune response. In tumor microenvironments, this interaction provides an immune escape for tumor cells through cytotoxic T-cell inactivation. Mice deficient for this gene display a variety of phenotypes including decreased allogeneic fetal survival rates and severe experimental autoimmune encephalomyelitis. [provided by RefSeq, Sep 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit altered susceptibility to experimental autoimmune encephalomyelitis, induced arthritis, nerve injury, autoimmune diabetes, bacterial infection, viral infection, and parasitic infection due to abnormal T cellmorphology and physiology. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 31 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc9 |
A |
G |
6: 142,638,435 (GRCm39) |
*160Q |
probably null |
Het |
| Aen |
G |
A |
7: 78,557,142 (GRCm39) |
G330E |
probably benign |
Het |
| Akap8l |
G |
A |
17: 32,555,294 (GRCm39) |
R262C |
probably damaging |
Het |
| Cbx8 |
G |
A |
11: 118,929,694 (GRCm39) |
Q300* |
probably null |
Het |
| Cd36 |
A |
C |
5: 18,019,721 (GRCm39) |
S127A |
probably damaging |
Het |
| Celf3 |
A |
G |
3: 94,387,593 (GRCm39) |
Y55C |
probably damaging |
Het |
| Clec1a |
A |
T |
6: 129,412,316 (GRCm39) |
|
probably null |
Het |
| Cog2 |
A |
T |
8: 125,277,045 (GRCm39) |
I684F |
probably damaging |
Het |
| Cyp2c65 |
C |
T |
19: 39,049,558 (GRCm39) |
L29F |
possibly damaging |
Het |
| Dnajc14 |
A |
G |
10: 128,643,359 (GRCm39) |
E427G |
probably damaging |
Het |
| Dytn |
A |
T |
1: 63,680,335 (GRCm39) |
L408* |
probably null |
Het |
| Flg |
A |
G |
3: 93,187,228 (GRCm39) |
T227A |
probably benign |
Het |
| Heatr4 |
T |
A |
12: 84,001,784 (GRCm39) |
K887M |
probably null |
Het |
| Hoxb1 |
C |
T |
11: 96,256,818 (GRCm39) |
Q56* |
probably null |
Het |
| Kcnh7 |
T |
A |
2: 62,569,688 (GRCm39) |
N736I |
probably damaging |
Het |
| Lgr4 |
T |
C |
2: 109,821,478 (GRCm39) |
V120A |
probably damaging |
Het |
| Ltbp1 |
A |
G |
17: 75,458,397 (GRCm39) |
Y326C |
possibly damaging |
Het |
| Map3k1 |
A |
T |
13: 111,892,259 (GRCm39) |
S999T |
probably damaging |
Het |
| Med12l |
T |
C |
3: 59,155,332 (GRCm39) |
F1171L |
probably damaging |
Het |
| Muc5b |
T |
C |
7: 141,412,402 (GRCm39) |
S1783P |
unknown |
Het |
| Nbr1 |
T |
C |
11: 101,456,600 (GRCm39) |
L159P |
probably damaging |
Het |
| Nme9 |
T |
C |
9: 99,351,760 (GRCm39) |
F248S |
possibly damaging |
Het |
| Or4x11 |
C |
T |
2: 89,867,739 (GRCm39) |
L159F |
probably benign |
Het |
| Or6k2 |
T |
C |
1: 173,986,830 (GRCm39) |
S164P |
probably damaging |
Het |
| Rasgrf1 |
C |
T |
9: 89,873,683 (GRCm39) |
T664I |
probably damaging |
Het |
| Setx |
A |
G |
2: 29,020,286 (GRCm39) |
D91G |
probably damaging |
Het |
| Stim1 |
A |
G |
7: 102,080,157 (GRCm39) |
R514G |
probably null |
Het |
| Svep1 |
C |
A |
4: 58,049,169 (GRCm39) |
G3446V |
probably damaging |
Het |
| Tcte2 |
T |
A |
17: 13,942,714 (GRCm39) |
|
probably benign |
Het |
| Trmt10b |
A |
G |
4: 45,308,562 (GRCm39) |
K239E |
probably damaging |
Het |
| Wdr70 |
A |
T |
15: 8,072,322 (GRCm39) |
S189T |
probably benign |
Het |
|
| Other mutations in Cd274 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01766:Cd274
|
APN |
19 |
29,362,810 (GRCm39) |
makesense |
probably null |
|
|
IGL02232:Cd274
|
APN |
19 |
29,359,938 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03304:Cd274
|
APN |
19 |
29,361,502 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1233:Cd274
|
UTSW |
19 |
29,351,301 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1356:Cd274
|
UTSW |
19 |
29,350,970 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R1464:Cd274
|
UTSW |
19 |
29,359,992 (GRCm39) |
splice site |
probably benign |
|
|
R1853:Cd274
|
UTSW |
19 |
29,357,882 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4280:Cd274
|
UTSW |
19 |
29,357,871 (GRCm39) |
missense |
probably benign |
|
|
R4283:Cd274
|
UTSW |
19 |
29,357,871 (GRCm39) |
missense |
probably benign |
|
|
R4553:Cd274
|
UTSW |
19 |
29,357,848 (GRCm39) |
missense |
probably benign |
0.43 |
|
R5063:Cd274
|
UTSW |
19 |
29,361,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5122:Cd274
|
UTSW |
19 |
29,357,965 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R5187:Cd274
|
UTSW |
19 |
29,359,936 (GRCm39) |
missense |
probably benign |
0.01 |
|
R5736:Cd274
|
UTSW |
19 |
29,359,940 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8114:Cd274
|
UTSW |
19 |
29,361,528 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8247:Cd274
|
UTSW |
19 |
29,362,795 (GRCm39) |
nonsense |
probably null |
|
|
R9099:Cd274
|
UTSW |
19 |
29,357,771 (GRCm39) |
nonsense |
probably null |
|
|
R9525:Cd274
|
UTSW |
19 |
29,359,879 (GRCm39) |
missense |
probably benign |
0.08 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGGTAGTCAGACATAGGTAGTATCTG -3'
(R):5'- AAAGGTCACTGTGCAAGGAC -3'
Sequencing Primer
(F):5'- CAGACATAGGTAGTATCTGTCTCTG -3'
(R):5'- TTTCCCAAGACGACTGATGG -3'
|
| Posted On |
2018-05-04 |
Incidental Mutation