Mutagenetix > Incidental Mutation

Incidental Mutation 'R6481:Spam1'

517093

Institutional Source

Beutler Lab

Gene Symbol

Spam1

Ensembl Gene

ENSMUSG00000029682

Gene Name

sperm adhesion molecule 1

Synonyms

Ph-20

MMRRC Submission

044613-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6481 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

24791187-24801047 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 24796929 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 293 (N293K)

Ref Sequence

ENSEMBL: ENSMUSP00000143970 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031693] [ENSMUST00000202331] [ENSMUST00000202569]

AlphaFold

P48794

Predicted Effect

probably benign
Transcript: ENSMUST00000031693
AA Change: N293K

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000031693
Gene: ENSMUSG00000029682
AA Change: N293K

Domain	Start	End	E-Value	Type
Pfam:Glyco_hydro_56	42	373	4.5e-136	PFAM
Blast:EGF	376	439	5e-13	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000202331
AA Change: N293K

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000143944
Gene: ENSMUSG00000029682
AA Change: N293K

Domain	Start	End	E-Value	Type
Pfam:Glyco_hydro_56	42	373	4.5e-136	PFAM
Blast:EGF	376	439	5e-13	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000202569
AA Change: N293K

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000143970
Gene: ENSMUSG00000029682
AA Change: N293K

Domain	Start	End	E-Value	Type
Pfam:Glyco_hydro_56	42	373	4.5e-136	PFAM
Blast:EGF	376	439	5e-13	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202786

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.3%
20x: 95.2%

Validation Efficiency

100% (82/82)

MGI Phenotype

PHENOTYPE: Male homozygotes for a targeted null mutation are normally fertile, but in vitro their sperm are slower at clearing cells from the cumulus mass. [provided by MGI curators]

Allele List at MGI

All alleles(1) : Targeted, knock-out(1)

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931428L18Rik	T	C	1: 31,261,588 (GRCm39)		probably benign	Het
Aadacl2fm3	T	C	3: 59,768,478 (GRCm39)	Y3H	probably benign	Het
Abca9	G	A	11: 110,056,788 (GRCm39)	Q11*	probably null	Het
Abcc9	A	T	6: 142,550,621 (GRCm39)	M1273K	probably damaging	Het
Abi2	A	G	1: 60,478,098 (GRCm39)		probably null	Het
Acsm5	A	G	7: 119,134,104 (GRCm39)	E295G	probably benign	Het
Anapc5	T	C	5: 122,938,607 (GRCm39)	D389G	probably benign	Het
Ano3	A	T	2: 110,625,372 (GRCm39)	D159E	probably benign	Het
Arhgap26	T	A	18: 39,283,110 (GRCm39)	M349K	probably damaging	Het
Arhgef39	A	G	4: 43,498,580 (GRCm39)		probably null	Het
Astn1	T	C	1: 158,440,032 (GRCm39)	S867P	probably benign	Het
Atad3a	A	T	4: 155,838,098 (GRCm39)		probably null	Het
Cadm1	A	T	9: 47,699,407 (GRCm39)	D91V	probably damaging	Het
Cc2d2b	T	C	19: 40,790,839 (GRCm39)	I933T	possibly damaging	Het
Cdcp3	A	T	7: 130,858,530 (GRCm39)	D1066V	probably benign	Het
Celsr3	C	G	9: 108,714,283 (GRCm39)	N1937K	possibly damaging	Het
Cic	A	C	7: 24,987,706 (GRCm39)	T558P	possibly damaging	Het
Cntln	A	G	4: 84,985,747 (GRCm39)	M933V	probably benign	Het
Coch	T	C	12: 51,644,956 (GRCm39)	F170S	probably damaging	Het
Col1a2	A	G	6: 4,538,680 (GRCm39)	Y1200C	unknown	Het
Col26a1	T	C	5: 136,773,032 (GRCm39)	M383V	probably benign	Het
Col4a4	A	T	1: 82,431,499 (GRCm39)	M1595K	unknown	Het
Crh	T	C	3: 19,748,501 (GRCm39)	E47G	probably benign	Het
D930020B18Rik	T	C	10: 121,497,053 (GRCm39)		probably null	Het
Def6	G	A	17: 28,445,137 (GRCm39)	R482H	probably benign	Het
Dnah8	G	A	17: 30,967,542 (GRCm39)	D2585N	probably benign	Het
Dpagt1	T	C	9: 44,242,487 (GRCm39)	L241P	probably damaging	Het
E2f7	A	G	10: 110,610,542 (GRCm39)	E389G	probably damaging	Het
Eif2b1	T	C	5: 124,715,174 (GRCm39)	I53V	probably benign	Het
Fbxo4	A	G	15: 3,995,216 (GRCm39)	L376P	probably damaging	Het
Fgfr2	A	G	7: 129,787,008 (GRCm39)	S352P	possibly damaging	Het
Fkbpl	C	A	17: 34,864,388 (GRCm39)	P52Q	possibly damaging	Het
Fry	G	A	5: 150,309,479 (GRCm39)	R641H	probably damaging	Het
Fsip2	A	G	2: 82,820,430 (GRCm39)	T5388A	possibly damaging	Het
Gm12728	A	G	4: 105,651,546 (GRCm39)	K52R	probably damaging	Het
Gtf2a1l	A	G	17: 89,019,053 (GRCm39)	D379G	probably benign	Het
Gys1	A	T	7: 45,092,393 (GRCm39)	Y332F	possibly damaging	Het
Hoxa7	T	A	6: 52,193,594 (GRCm39)		probably benign	Het
Ifitm1	G	A	7: 140,549,519 (GRCm39)	V101I	probably benign	Het
Kalrn	T	A	16: 34,181,354 (GRCm39)	T95S	probably damaging	Het
Leng8	A	G	7: 4,148,412 (GRCm39)	Y728C	probably damaging	Het
Lonp2	G	T	8: 87,361,536 (GRCm39)	D238Y	possibly damaging	Het
Ltn1	A	C	16: 87,175,868 (GRCm39)	S1757A	probably damaging	Het
Man2a2	A	T	7: 80,013,819 (GRCm39)	S411T	probably damaging	Het
Mrps33	C	A	6: 39,782,304 (GRCm39)		probably null	Het
Muc16	C	T	9: 18,461,973 (GRCm39)		probably null	Het
Muc5ac	A	G	7: 141,362,808 (GRCm39)		probably benign	Het
Naip2	A	C	13: 100,298,549 (GRCm39)	S496A	probably benign	Het
Or10al6	T	G	17: 38,083,194 (GRCm39)	F217V	probably damaging	Het
Or13p8	A	G	4: 118,583,930 (GRCm39)	Y162C	probably damaging	Het
Or1j21	T	A	2: 36,683,789 (GRCm39)	D180E	possibly damaging	Het
Or4c106	A	T	2: 88,682,863 (GRCm39)	T190S	probably damaging	Het
Or55b10	A	T	7: 102,143,346 (GRCm39)	V212D	probably damaging	Het
Or5w17	T	C	2: 87,583,812 (GRCm39)	N175S	probably damaging	Het
Pag1	T	A	3: 9,764,396 (GRCm39)	E252D	possibly damaging	Het
Plcd3	T	C	11: 102,968,593 (GRCm39)	Y366C	probably damaging	Het
Psg17	A	C	7: 18,548,375 (GRCm39)	S465R	probably damaging	Het
Ptpn9	G	T	9: 56,930,324 (GRCm39)	V50L	probably damaging	Het
Rab17	T	G	1: 90,886,683 (GRCm39)	S190R	probably benign	Het
Samd11	A	G	4: 156,333,535 (GRCm39)		probably null	Het
Slc17a5	A	G	9: 78,445,553 (GRCm39)	F434S	possibly damaging	Het
Slc22a15	A	G	3: 101,790,899 (GRCm39)	I202T	possibly damaging	Het
Slc8a1	G	T	17: 81,696,347 (GRCm39)	Q896K	probably benign	Het
Slc9a5	A	T	8: 106,085,025 (GRCm39)	K509*	probably null	Het
Slf2	A	C	19: 44,961,603 (GRCm39)	M1041L	probably benign	Het
Smn1	A	G	13: 100,265,008 (GRCm39)		probably null	Het
Snx9	T	C	17: 5,972,484 (GRCm39)		probably null	Het
Soat2	T	A	15: 102,070,490 (GRCm39)	L431Q	probably damaging	Het
Tatdn1	T	C	15: 58,795,760 (GRCm39)	T66A	possibly damaging	Het
Tmprss11g	A	T	5: 86,640,015 (GRCm39)	S205T	probably benign	Het
Tnpo3	G	T	6: 29,571,100 (GRCm39)	N431K	possibly damaging	Het
Trim39	T	C	17: 36,579,554 (GRCm39)	T31A	probably benign	Het
Trmt9b	T	C	8: 36,965,637 (GRCm39)		probably null	Het
Tshz3	A	G	7: 36,451,764 (GRCm39)		probably null	Het
Ttll11	G	A	2: 35,792,766 (GRCm39)	T359M	probably damaging	Het
Ttn	T	G	2: 76,571,843 (GRCm39)	D26350A	probably damaging	Het
Ubr4	G	T	4: 139,159,062 (GRCm39)	V2472F	probably damaging	Het
Vsx2	C	T	12: 84,639,878 (GRCm39)	P265S	probably benign	Het
Wdr90	C	T	17: 26,064,885 (GRCm39)	G1708R	probably damaging	Het
Wnt11	A	G	7: 98,502,481 (GRCm39)	Y351C	probably damaging	Het
Xpo6	A	C	7: 125,712,057 (GRCm39)	N3K	probably damaging	Het
Zfp445	A	G	9: 122,686,631 (GRCm39)	S165P	probably benign	Het
Zfp953	A	T	13: 67,496,001 (GRCm39)	Y13*	probably null	Het
Zftraf1	T	C	15: 76,542,908 (GRCm39)		probably null	Het

Other mutations in Spam1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00535:Spam1	APN	6	24,796,722 (GRCm39)	nonsense	probably null
IGL02152:Spam1	APN	6	24,800,802 (GRCm39)	utr 3 prime	probably benign
IGL02377:Spam1	APN	6	24,796,696 (GRCm39)	missense	probably damaging	1.00
IGL02666:Spam1	APN	6	24,796,123 (GRCm39)	missense	possibly damaging	0.67
IGL02968:Spam1	APN	6	24,796,442 (GRCm39)	missense	possibly damaging	0.84
IGL03004:Spam1	APN	6	24,796,913 (GRCm39)	missense	probably damaging	1.00
IGL03136:Spam1	APN	6	24,797,010 (GRCm39)	splice site	probably benign
I2288:Spam1	UTSW	6	24,796,477 (GRCm39)	missense	probably benign	0.00
I2289:Spam1	UTSW	6	24,796,477 (GRCm39)	missense	probably benign	0.00
R0279:Spam1	UTSW	6	24,800,418 (GRCm39)	missense	probably benign
R0454:Spam1	UTSW	6	24,797,837 (GRCm39)	missense	probably damaging	0.99
R0486:Spam1	UTSW	6	24,796,394 (GRCm39)	missense	probably damaging	1.00
R0734:Spam1	UTSW	6	24,796,948 (GRCm39)	missense	probably benign	0.17
R0811:Spam1	UTSW	6	24,796,886 (GRCm39)	missense	probably damaging	1.00
R0812:Spam1	UTSW	6	24,796,886 (GRCm39)	missense	probably damaging	1.00
R1294:Spam1	UTSW	6	24,796,906 (GRCm39)	missense	probably benign	0.12
R1703:Spam1	UTSW	6	24,796,256 (GRCm39)	missense	probably damaging	1.00
R2156:Spam1	UTSW	6	24,796,267 (GRCm39)	missense	probably damaging	1.00
R2163:Spam1	UTSW	6	24,796,846 (GRCm39)	missense	probably benign	0.33
R2762:Spam1	UTSW	6	24,796,642 (GRCm39)	missense	possibly damaging	0.94
R2970:Spam1	UTSW	6	24,796,724 (GRCm39)	missense	probably damaging	1.00
R4646:Spam1	UTSW	6	24,800,586 (GRCm39)	missense	probably benign	0.01
R4664:Spam1	UTSW	6	24,796,661 (GRCm39)	missense	probably benign	0.01
R4923:Spam1	UTSW	6	24,796,655 (GRCm39)	missense	probably damaging	1.00
R5452:Spam1	UTSW	6	24,800,731 (GRCm39)	missense	probably benign	0.00
R5589:Spam1	UTSW	6	24,796,109 (GRCm39)	missense	probably benign	0.01
R5591:Spam1	UTSW	6	24,800,545 (GRCm39)	missense	probably damaging	0.99
R5861:Spam1	UTSW	6	24,796,570 (GRCm39)	missense	probably benign
R6564:Spam1	UTSW	6	24,796,355 (GRCm39)	missense	possibly damaging	0.90
R6754:Spam1	UTSW	6	24,796,315 (GRCm39)	missense	probably damaging	0.97
R7103:Spam1	UTSW	6	24,800,583 (GRCm39)	missense	probably benign	0.00
R7462:Spam1	UTSW	6	24,796,907 (GRCm39)	missense	probably damaging	0.99
R7559:Spam1	UTSW	6	24,800,452 (GRCm39)	missense	probably damaging	1.00
R8127:Spam1	UTSW	6	24,796,970 (GRCm39)	missense	possibly damaging	0.95
R8677:Spam1	UTSW	6	24,796,984 (GRCm39)	missense	probably benign	0.13
R9356:Spam1	UTSW	6	24,800,565 (GRCm39)	missense	probably damaging	1.00
R9783:Spam1	UTSW	6	24,796,226 (GRCm39)	missense	probably benign	0.01
X0022:Spam1	UTSW	6	24,797,885 (GRCm39)	missense	possibly damaging	0.52
Z1176:Spam1	UTSW	6	24,800,322 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGACCCTAAGTATGATGGGCAG -3'
(R):5'- CTGTTTGGGAGAATATAGAACAAGCC -3'

Sequencing Primer
(F):5'- CAGTGCCCTGCTGTGGAAAAG -3'
(R):5'- CAAGCCCTGTTTACATTCTTAAGTG -3'

Posted On

2018-05-21