Incidental Mutation 'R6475:Itgb7'
ID |
517405 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Itgb7
|
Ensembl Gene |
ENSMUSG00000001281 |
Gene Name |
integrin beta 7 |
Synonyms |
|
MMRRC Submission |
044608-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.220)
|
Stock # |
R6475 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
15 |
Chromosomal Location |
102124430-102140379 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 102124701 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Valine
at position 772
(D772V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000001327
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000001327]
[ENSMUST00000118729]
[ENSMUST00000119168]
[ENSMUST00000119800]
[ENSMUST00000141465]
[ENSMUST00000230867]
|
AlphaFold |
P26011 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000001327
AA Change: D772V
PolyPhen 2
Score 0.122 (Sensitivity: 0.93; Specificity: 0.86)
|
SMART Domains |
Protein: ENSMUSP00000001327 Gene: ENSMUSG00000001281 AA Change: D772V
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
PSI
|
44 |
92 |
6.35e-6 |
SMART |
INB
|
50 |
476 |
2.82e-273 |
SMART |
VWA
|
151 |
383 |
7.52e-2 |
SMART |
low complexity region
|
537 |
557 |
N/A |
INTRINSIC |
Pfam:EGF_2
|
605 |
635 |
2.6e-7 |
PFAM |
Integrin_B_tail
|
645 |
721 |
4.22e-18 |
SMART |
low complexity region
|
732 |
744 |
N/A |
INTRINSIC |
Integrin_b_cyt
|
746 |
792 |
7.82e-22 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000118729
|
SMART Domains |
Protein: ENSMUSP00000112985 Gene: ENSMUSG00000046897
Domain | Start | End | E-Value | Type |
low complexity region
|
53 |
62 |
N/A |
INTRINSIC |
ZnF_C2H2
|
76 |
98 |
3.07e-1 |
SMART |
ZnF_C2H2
|
104 |
126 |
1.69e-3 |
SMART |
ZnF_C2H2
|
132 |
152 |
4.99e1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000119168
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000119800
|
SMART Domains |
Protein: ENSMUSP00000113770 Gene: ENSMUSG00000046897
Domain | Start | End | E-Value | Type |
low complexity region
|
65 |
74 |
N/A |
INTRINSIC |
ZnF_C2H2
|
88 |
110 |
3.07e-1 |
SMART |
ZnF_C2H2
|
116 |
138 |
1.69e-3 |
SMART |
ZnF_C2H2
|
144 |
164 |
4.99e1 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000119830
|
SMART Domains |
Protein: ENSMUSP00000113281 Gene: ENSMUSG00000046897
Domain | Start | End | E-Value | Type |
ZnF_C2H2
|
25 |
47 |
3.07e-1 |
SMART |
ZnF_C2H2
|
53 |
75 |
1.69e-3 |
SMART |
ZnF_C2H2
|
81 |
101 |
4.99e1 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000141465
|
Predicted Effect |
unknown
Transcript: ENSMUST00000229440
AA Change: R61S
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000230867
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000230550
|
Meta Mutation Damage Score |
0.0980 |
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.5%
- 20x: 92.0%
|
Validation Efficiency |
96% (54/56) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is a member of the integrin superfamily. Members of this family are adhesion receptors that function in signaling from the extracellular matrix to the cell. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain. The encoded protein forms dimers with an alpha4 chain or an alphaE chain and plays a role in leukocyte adhesion. Dimerization with alpha4 forms a homing receptor for migration of lymphocytes to the intestinal mucosa and Peyer's patches. Dimerization with alphaE permits binding to the ligand epithelial cadherin, a calcium-dependent adhesion molecule. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013] PHENOTYPE: Homozygous null mice display hypoplasia of gut-associated lymph tissue due to defects in lymphocyte migration [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 58 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Asb5 |
T |
A |
8: 55,003,610 (GRCm39) |
V44E |
probably damaging |
Het |
Bmpr2 |
T |
A |
1: 59,907,503 (GRCm39) |
D865E |
probably damaging |
Het |
Ccr4 |
A |
G |
9: 114,322,047 (GRCm39) |
V6A |
probably benign |
Het |
Cd209a |
A |
T |
8: 3,797,031 (GRCm39) |
D102E |
probably damaging |
Het |
Cdh18 |
A |
G |
15: 23,227,022 (GRCm39) |
D161G |
possibly damaging |
Het |
Cog4 |
T |
A |
8: 111,607,526 (GRCm39) |
I671N |
possibly damaging |
Het |
Col14a1 |
T |
G |
15: 55,309,218 (GRCm39) |
|
probably benign |
Het |
Cpne6 |
A |
G |
14: 55,751,110 (GRCm39) |
D173G |
probably damaging |
Het |
Daglb |
G |
T |
5: 143,467,406 (GRCm39) |
V275L |
probably benign |
Het |
Defb43 |
G |
T |
14: 63,249,321 (GRCm39) |
|
probably null |
Het |
Dhx30 |
A |
G |
9: 109,914,120 (GRCm39) |
V1022A |
possibly damaging |
Het |
Egfem1 |
A |
T |
3: 29,711,312 (GRCm39) |
K297M |
probably damaging |
Het |
Egfr |
A |
G |
11: 16,841,259 (GRCm39) |
I717V |
probably benign |
Het |
Eif2ak1 |
T |
G |
5: 143,803,765 (GRCm39) |
|
probably null |
Het |
Epb42 |
T |
C |
2: 120,857,614 (GRCm39) |
Y307C |
possibly damaging |
Het |
Erlec1 |
G |
A |
11: 30,898,442 (GRCm39) |
Q10* |
probably null |
Het |
Fam185a |
A |
G |
5: 21,630,281 (GRCm39) |
D39G |
probably benign |
Het |
Fbxl4 |
T |
A |
4: 22,433,661 (GRCm39) |
D599E |
probably damaging |
Het |
Fgfr2 |
T |
A |
7: 129,802,850 (GRCm39) |
T268S |
probably benign |
Het |
Gabra1 |
A |
T |
11: 42,053,382 (GRCm39) |
M84K |
probably benign |
Het |
Gba1 |
A |
G |
3: 89,113,235 (GRCm39) |
D222G |
probably benign |
Het |
Gm3409 |
T |
A |
5: 146,474,596 (GRCm39) |
H37Q |
possibly damaging |
Het |
Gm4559 |
A |
G |
7: 141,827,887 (GRCm39) |
C72R |
unknown |
Het |
Grik4 |
T |
C |
9: 42,540,304 (GRCm39) |
N292S |
probably benign |
Het |
Haao |
A |
G |
17: 84,139,113 (GRCm39) |
S274P |
possibly damaging |
Het |
Hsd17b4 |
T |
A |
18: 50,305,329 (GRCm39) |
|
probably null |
Het |
Igdcc4 |
A |
T |
9: 65,027,603 (GRCm39) |
S222C |
probably damaging |
Het |
Iqub |
T |
A |
6: 24,449,744 (GRCm39) |
N707I |
probably damaging |
Het |
Kif14 |
T |
C |
1: 136,455,149 (GRCm39) |
L1607P |
probably damaging |
Het |
Klf5 |
A |
G |
14: 99,538,817 (GRCm39) |
T77A |
probably benign |
Het |
Klhl29 |
C |
T |
12: 5,141,030 (GRCm39) |
V605I |
probably damaging |
Het |
Map4k1 |
T |
C |
7: 28,686,447 (GRCm39) |
V105A |
probably damaging |
Het |
Mctp2 |
A |
T |
7: 71,850,092 (GRCm39) |
|
probably null |
Het |
Med12l |
A |
G |
3: 59,164,500 (GRCm39) |
E1364G |
probably damaging |
Het |
Mup9 |
A |
T |
4: 60,375,805 (GRCm39) |
D30E |
possibly damaging |
Het |
Naip1 |
T |
C |
13: 100,545,596 (GRCm39) |
R1311G |
probably damaging |
Het |
Or2ag2 |
A |
G |
7: 106,485,604 (GRCm39) |
V140A |
probably benign |
Het |
Or2v1 |
C |
T |
11: 49,025,760 (GRCm39) |
T247I |
probably benign |
Het |
Or4f14 |
G |
A |
2: 111,743,204 (GRCm39) |
Q24* |
probably null |
Het |
Or8g28 |
T |
A |
9: 39,169,378 (GRCm39) |
M197L |
probably benign |
Het |
Pkd1l3 |
A |
C |
8: 110,349,844 (GRCm39) |
T230P |
unknown |
Het |
Pthlh |
G |
T |
6: 147,158,688 (GRCm39) |
H91N |
probably damaging |
Het |
Rapgef5 |
T |
A |
12: 117,681,942 (GRCm39) |
V239D |
probably damaging |
Het |
Rita1 |
G |
A |
5: 120,749,635 (GRCm39) |
T26I |
probably damaging |
Het |
Robo3 |
T |
C |
9: 37,334,586 (GRCm39) |
T615A |
probably damaging |
Het |
Rpp38 |
T |
C |
2: 3,330,644 (GRCm39) |
D86G |
probably benign |
Het |
Sec31a |
T |
C |
5: 100,533,129 (GRCm39) |
T539A |
probably damaging |
Het |
Senp2 |
G |
T |
16: 21,842,550 (GRCm39) |
V205L |
probably damaging |
Het |
Septin10 |
T |
C |
10: 59,028,133 (GRCm39) |
N63D |
possibly damaging |
Het |
Sez6 |
A |
G |
11: 77,864,670 (GRCm39) |
|
|
Het |
Spesp1 |
C |
T |
9: 62,179,715 (GRCm39) |
V398I |
probably benign |
Het |
Tmbim7 |
G |
A |
5: 3,714,319 (GRCm39) |
G19S |
probably benign |
Het |
Tnni3k |
A |
T |
3: 154,646,695 (GRCm39) |
L431* |
probably null |
Het |
Trdn |
T |
A |
10: 33,340,551 (GRCm39) |
|
probably null |
Het |
Tubb2a |
A |
G |
13: 34,259,442 (GRCm39) |
V116A |
possibly damaging |
Het |
Ush1c |
T |
C |
7: 45,878,643 (GRCm39) |
D124G |
probably damaging |
Het |
Zfp768 |
A |
T |
7: 126,943,827 (GRCm39) |
F103L |
probably damaging |
Het |
Zfp799 |
A |
G |
17: 33,039,820 (GRCm39) |
S149P |
probably damaging |
Het |
|
Other mutations in Itgb7 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01012:Itgb7
|
APN |
15 |
102,136,020 (GRCm39) |
missense |
probably benign |
0.22 |
IGL01574:Itgb7
|
APN |
15 |
102,135,975 (GRCm39) |
missense |
possibly damaging |
0.83 |
IGL01814:Itgb7
|
APN |
15 |
102,131,852 (GRCm39) |
missense |
possibly damaging |
0.78 |
IGL01875:Itgb7
|
APN |
15 |
102,126,430 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01996:Itgb7
|
APN |
15 |
102,126,412 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02320:Itgb7
|
APN |
15 |
102,132,772 (GRCm39) |
missense |
probably benign |
0.04 |
IGL02541:Itgb7
|
APN |
15 |
102,131,892 (GRCm39) |
missense |
probably benign |
0.05 |
IGL02547:Itgb7
|
APN |
15 |
102,126,945 (GRCm39) |
missense |
probably damaging |
1.00 |
R0083:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably damaging |
0.98 |
R0108:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably damaging |
0.98 |
R0195:Itgb7
|
UTSW |
15 |
102,130,618 (GRCm39) |
unclassified |
probably benign |
|
R1033:Itgb7
|
UTSW |
15 |
102,131,989 (GRCm39) |
missense |
probably damaging |
1.00 |
R1627:Itgb7
|
UTSW |
15 |
102,131,911 (GRCm39) |
missense |
probably damaging |
0.97 |
R1999:Itgb7
|
UTSW |
15 |
102,130,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R2150:Itgb7
|
UTSW |
15 |
102,130,553 (GRCm39) |
missense |
probably damaging |
1.00 |
R2331:Itgb7
|
UTSW |
15 |
102,131,983 (GRCm39) |
missense |
probably damaging |
1.00 |
R3747:Itgb7
|
UTSW |
15 |
102,131,212 (GRCm39) |
missense |
probably damaging |
1.00 |
R4758:Itgb7
|
UTSW |
15 |
102,124,642 (GRCm39) |
missense |
probably benign |
0.07 |
R4779:Itgb7
|
UTSW |
15 |
102,132,848 (GRCm39) |
missense |
possibly damaging |
0.54 |
R5134:Itgb7
|
UTSW |
15 |
102,125,842 (GRCm39) |
missense |
probably damaging |
1.00 |
R5158:Itgb7
|
UTSW |
15 |
102,125,464 (GRCm39) |
missense |
probably benign |
0.05 |
R5323:Itgb7
|
UTSW |
15 |
102,140,059 (GRCm39) |
intron |
probably benign |
|
R5416:Itgb7
|
UTSW |
15 |
102,125,744 (GRCm39) |
missense |
probably benign |
0.00 |
R5652:Itgb7
|
UTSW |
15 |
102,124,638 (GRCm39) |
missense |
possibly damaging |
0.48 |
R6089:Itgb7
|
UTSW |
15 |
102,125,721 (GRCm39) |
missense |
probably benign |
0.00 |
R6144:Itgb7
|
UTSW |
15 |
102,131,917 (GRCm39) |
missense |
probably benign |
0.45 |
R6384:Itgb7
|
UTSW |
15 |
102,132,886 (GRCm39) |
missense |
probably benign |
0.04 |
R6754:Itgb7
|
UTSW |
15 |
102,124,595 (GRCm39) |
makesense |
probably null |
|
R6857:Itgb7
|
UTSW |
15 |
102,131,900 (GRCm39) |
missense |
probably damaging |
1.00 |
R7394:Itgb7
|
UTSW |
15 |
102,127,689 (GRCm39) |
missense |
probably damaging |
1.00 |
R7747:Itgb7
|
UTSW |
15 |
102,125,039 (GRCm39) |
missense |
possibly damaging |
0.88 |
R8014:Itgb7
|
UTSW |
15 |
102,131,087 (GRCm39) |
missense |
probably damaging |
1.00 |
R8446:Itgb7
|
UTSW |
15 |
102,127,043 (GRCm39) |
missense |
probably damaging |
1.00 |
R8523:Itgb7
|
UTSW |
15 |
102,124,957 (GRCm39) |
missense |
probably damaging |
0.99 |
R8962:Itgb7
|
UTSW |
15 |
102,127,037 (GRCm39) |
missense |
probably damaging |
1.00 |
R9051:Itgb7
|
UTSW |
15 |
102,126,359 (GRCm39) |
missense |
possibly damaging |
0.88 |
R9074:Itgb7
|
UTSW |
15 |
102,132,797 (GRCm39) |
missense |
|
|
R9105:Itgb7
|
UTSW |
15 |
102,135,904 (GRCm39) |
missense |
probably damaging |
1.00 |
R9369:Itgb7
|
UTSW |
15 |
102,131,821 (GRCm39) |
missense |
probably damaging |
1.00 |
R9378:Itgb7
|
UTSW |
15 |
102,135,831 (GRCm39) |
critical splice donor site |
probably null |
|
R9467:Itgb7
|
UTSW |
15 |
102,131,989 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- ATCTTTGCCTGACAGACGCTG -3'
(R):5'- GAGCAGCAGCAACTCAACTG -3'
Sequencing Primer
(F):5'- TGACAGACGCTGCCCTG -3'
(R):5'- CAACTCAACTGGAAGCAGGTG -3'
|
Posted On |
2018-05-21 |