Mutagenetix > Incidental Mutation

Incidental Mutation 'R6419:Cog3'

518030

Institutional Source

Beutler Lab

Gene Symbol

Cog3

Ensembl Gene

ENSMUSG00000034893

Gene Name

component of oligomeric golgi complex 3

Synonyms

MMRRC Submission

044561-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6419 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

75939790-75991998 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 75962178 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 554 (C554*)

Ref Sequence

ENSEMBL: ENSMUSP00000154131 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049168] [ENSMUST00000227473]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000049168
AA Change: C564*

SMART Domains

Protein: ENSMUSP00000045016
Gene: ENSMUSG00000034893
AA Change: C564*

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
Pfam:Sec34	130	277	9.5e-57	PFAM
Blast:HisKA	745	810	1e-5	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226686

Predicted Effect

probably null
Transcript: ENSMUST00000227473
AA Change: C554*

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.3%

Validation Efficiency

96% (67/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a component of the conserved oligomeric Golgi (COG) complex which is composed of eight different subunits and is required for normal Golgi morphology and localization. Defects in the COG complex result in multiple deficiencies in protein glycosylation. The protein encoded by this gene is involved in ER-Golgi transport.[provided by RefSeq, Jun 2011]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930578G10Rik	T	C	4: 42,812,473 (GRCm39)		probably benign	Het
Abcc2	T	A	19: 43,825,947 (GRCm39)		probably null	Het
Adamts12	C	T	15: 11,215,759 (GRCm39)	T260M	possibly damaging	Het
Adamts20	C	T	15: 94,231,556 (GRCm39)	V878I	possibly damaging	Het
Adgrl4	A	G	3: 151,144,953 (GRCm39)	E34G	probably damaging	Het
Asah1	A	T	8: 41,796,803 (GRCm39)	I293N	probably damaging	Het
Atosa	G	A	9: 74,916,619 (GRCm39)	S413N	probably benign	Het
B3galt2	A	T	1: 143,522,839 (GRCm39)	E325V	possibly damaging	Het
Baz1b	T	A	5: 135,271,348 (GRCm39)	H1310Q	probably benign	Het
Ccdc125	T	A	13: 100,826,834 (GRCm39)	N204K	probably damaging	Het
Cd36	C	T	5: 18,002,150 (GRCm39)	D284N	probably benign	Het
Cdh12	T	C	15: 21,520,483 (GRCm39)	L316S	probably damaging	Het
Cenpv	T	C	11: 62,416,008 (GRCm39)	K247R	probably benign	Het
Cldn18	T	C	9: 99,574,801 (GRCm39)	H257R	possibly damaging	Het
Cnot8	T	A	11: 58,004,891 (GRCm39)	Y197N	probably damaging	Het
Col4a4	A	G	1: 82,444,207 (GRCm39)		probably null	Het
Cops5	G	A	1: 10,103,532 (GRCm39)	T158I	probably damaging	Het
Dhh	A	G	15: 98,792,282 (GRCm39)	F242S	probably damaging	Het
Dot1l	T	C	10: 80,627,315 (GRCm39)	V1512A	possibly damaging	Het
Dstn	T	G	2: 143,781,907 (GRCm39)	I116S	possibly damaging	Het
Egfem1	G	A	3: 29,711,398 (GRCm39)	D326N	probably damaging	Het
Enpp3	A	T	10: 24,684,089 (GRCm39)	Y52N	probably damaging	Het
Gabra2	A	G	5: 71,119,426 (GRCm39)	S359P	probably benign	Het
Gbp7	G	A	3: 142,252,214 (GRCm39)	G599E	probably benign	Het
Gcat	T	G	15: 78,920,264 (GRCm39)	I198S	probably damaging	Het
Gm8439	A	G	4: 120,466,755 (GRCm39)	K82R	unknown	Het
Grin2b	A	G	6: 135,717,965 (GRCm39)	F709S	probably damaging	Het
Grm3	T	C	5: 9,620,201 (GRCm39)	N348D	probably damaging	Het
Hdgfl1	G	A	13: 26,954,075 (GRCm39)		probably benign	Het
Hmgxb3	G	T	18: 61,285,296 (GRCm39)	D564E	possibly damaging	Het
Igkv4-61	C	A	6: 69,394,138 (GRCm39)	A31S	possibly damaging	Het
Impg1	A	G	9: 80,287,300 (GRCm39)	V305A	probably benign	Het
Ints7	T	A	1: 191,334,414 (GRCm39)	S313T	possibly damaging	Het
Knl1	T	A	2: 118,899,484 (GRCm39)	I395K	probably benign	Het
Lactb2	A	T	1: 13,708,459 (GRCm39)	Y196*	probably null	Het
Lad1	T	C	1: 135,759,630 (GRCm39)	S509P	possibly damaging	Het
Ltf	T	C	9: 110,860,090 (GRCm39)	F504L	possibly damaging	Het
Med4	A	T	14: 73,751,363 (GRCm39)	D104V	probably damaging	Het
Mrpl58	A	T	11: 115,301,073 (GRCm39)	N128Y	probably damaging	Het
Ndufs2	T	C	1: 171,068,668 (GRCm39)	T54A	probably benign	Het
Notch2	G	T	3: 98,007,705 (GRCm39)		probably null	Het
Ntng1	A	T	3: 109,690,169 (GRCm39)	N424K	possibly damaging	Het
Ntrk2	G	A	13: 59,009,113 (GRCm39)	W301*	probably null	Het
Or5b116	T	A	19: 13,423,131 (GRCm39)	S252T	probably benign	Het
Otud6b	A	G	4: 14,822,766 (GRCm39)	S113P	possibly damaging	Het
Pcdhb20	A	G	18: 37,638,608 (GRCm39)	N378S	probably damaging	Het
Polr3b	T	C	10: 84,473,975 (GRCm39)	S185P	possibly damaging	Het
Ptprn	G	A	1: 75,240,681 (GRCm39)	R31C	probably benign	Het
Rgsl1	C	T	1: 153,698,117 (GRCm39)	V478M	probably damaging	Het
Sema6b	A	T	17: 56,439,784 (GRCm39)	L19*	probably null	Het
Slfn8	A	G	11: 82,894,881 (GRCm39)		probably null	Het
Spen	A	T	4: 141,203,621 (GRCm39)	S1669T	unknown	Het
Syne2	T	C	12: 76,143,740 (GRCm39)	F1522L	probably damaging	Het
Tarbp1	C	T	8: 127,185,783 (GRCm39)	A470T	possibly damaging	Het
Tent4a	A	C	13: 69,658,785 (GRCm39)	M350R	possibly damaging	Het
Tiam1	C	A	16: 89,694,912 (GRCm39)	E182*	probably null	Het
Tmem231	G	A	8: 112,653,524 (GRCm39)		probably benign	Het
Trip12	C	T	1: 84,771,591 (GRCm39)	A186T	probably damaging	Het
Ufc1	C	T	1: 171,116,529 (GRCm39)	A147T	probably damaging	Het
Vmn1r199	A	G	13: 22,567,777 (GRCm39)	K314R	possibly damaging	Het
Vmn2r13	A	T	5: 109,323,085 (GRCm39)	I68K	possibly damaging	Het
Vmn2r77	A	T	7: 86,460,767 (GRCm39)	I698F	probably damaging	Het
Vmn2r86	T	C	10: 130,282,795 (GRCm39)	K607R	probably damaging	Het
Vwa3b	T	C	1: 37,196,457 (GRCm39)	V28A	probably benign	Het
Wdr19	A	G	5: 65,373,236 (GRCm39)	N166S	possibly damaging	Het
Wfdc17	G	A	11: 83,595,634 (GRCm39)	G33R	probably damaging	Het
Zfp330	T	G	8: 83,491,545 (GRCm39)	K209N	probably benign	Het
Zfp493	A	G	13: 67,934,526 (GRCm39)	T160A	probably benign	Het
Zfp974	A	T	7: 27,610,940 (GRCm39)	C262S	possibly damaging	Het

Other mutations in Cog3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02019:Cog3	APN	14	75,968,044 (GRCm39)	missense	possibly damaging	0.79
IGL02637:Cog3	APN	14	75,959,636 (GRCm39)	splice site	probably benign
IGL02934:Cog3	APN	14	75,979,129 (GRCm39)	missense	probably damaging	0.99
R0105:Cog3	UTSW	14	75,959,580 (GRCm39)	missense	probably damaging	0.99
R0105:Cog3	UTSW	14	75,959,580 (GRCm39)	missense	probably damaging	0.99
R0403:Cog3	UTSW	14	75,979,767 (GRCm39)	splice site	probably benign
R0972:Cog3	UTSW	14	75,954,610 (GRCm39)	missense	probably benign
R1735:Cog3	UTSW	14	75,966,761 (GRCm39)	nonsense	probably null
R1813:Cog3	UTSW	14	75,979,784 (GRCm39)	missense	probably benign	0.03
R1896:Cog3	UTSW	14	75,979,784 (GRCm39)	missense	probably benign	0.03
R2517:Cog3	UTSW	14	75,979,182 (GRCm39)	missense	probably benign	0.01
R2567:Cog3	UTSW	14	75,991,730 (GRCm39)	missense	probably benign
R2962:Cog3	UTSW	14	75,977,974 (GRCm39)	critical splice donor site	probably null
R3103:Cog3	UTSW	14	75,984,641 (GRCm39)	critical splice acceptor site	probably null
R3689:Cog3	UTSW	14	75,991,878 (GRCm39)	start codon destroyed	probably null
R3691:Cog3	UTSW	14	75,991,878 (GRCm39)	start codon destroyed	probably null
R3927:Cog3	UTSW	14	75,980,998 (GRCm39)	splice site	probably benign
R4581:Cog3	UTSW	14	75,970,391 (GRCm39)	missense	probably benign	0.04
R4932:Cog3	UTSW	14	75,970,394 (GRCm39)	missense	probably damaging	0.98
R5560:Cog3	UTSW	14	75,966,833 (GRCm39)	missense	probably damaging	1.00
R5654:Cog3	UTSW	14	75,962,239 (GRCm39)	missense	probably benign	0.03
R6253:Cog3	UTSW	14	75,957,152 (GRCm39)	missense	probably damaging	1.00
R6791:Cog3	UTSW	14	75,968,118 (GRCm39)	missense	probably damaging	1.00
R6803:Cog3	UTSW	14	75,941,479 (GRCm39)	missense	probably benign	0.00
R7015:Cog3	UTSW	14	75,950,716 (GRCm39)	missense	possibly damaging	0.81
R7998:Cog3	UTSW	14	75,984,533 (GRCm39)	missense	possibly damaging	0.94
R7999:Cog3	UTSW	14	75,984,533 (GRCm39)	missense	possibly damaging	0.94
R8075:Cog3	UTSW	14	75,968,142 (GRCm39)	missense	probably damaging	1.00
R8294:Cog3	UTSW	14	75,954,619 (GRCm39)	missense	probably damaging	1.00
R8329:Cog3	UTSW	14	75,978,003 (GRCm39)	missense	probably damaging	0.99
R8434:Cog3	UTSW	14	75,979,836 (GRCm39)	missense	probably damaging	1.00
R9170:Cog3	UTSW	14	75,966,802 (GRCm39)	missense	probably damaging	1.00
X0017:Cog3	UTSW	14	75,979,181 (GRCm39)	missense	probably benign	0.01
X0021:Cog3	UTSW	14	75,981,033 (GRCm39)	missense	possibly damaging	0.87
X0066:Cog3	UTSW	14	75,979,181 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TTACCCACAGTTTCAATGAGCC -3'
(R):5'- CCTGTCACTGGTTTAGACTTCTAGG -3'

Sequencing Primer
(F):5'- TGAGCCCTTAAAATAGATCAACCTTC -3'
(R):5'- GGGGAATTGATGATAGCCAATG -3'

Posted On

2018-05-24