Incidental Mutation 'R6512:Nedd1'
ID 519955
Institutional Source Beutler Lab
Gene Symbol Nedd1
Ensembl Gene ENSMUSG00000019988
Gene Name neural precursor cell expressed, developmentally down-regulated gene 1
Synonyms
MMRRC Submission 045017-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.964) question?
Stock # R6512 (G1)
Quality Score 113.008
Status Validated
Chromosome 10
Chromosomal Location 92520608-92558282 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 92527737 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 486 (A486T)
Ref Sequence ENSEMBL: ENSMUSP00000020163 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000020163]
AlphaFold P33215
Predicted Effect probably benign
Transcript: ENSMUST00000020163
AA Change: A486T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000020163
Gene: ENSMUSG00000019988
AA Change: A486T

DomainStartEndE-ValueType
WD40 21 63 5.97e-1 SMART
WD40 67 105 9.75e-3 SMART
WD40 108 147 6.19e-5 SMART
WD40 149 191 6.42e-1 SMART
WD40 194 235 9.1e-3 SMART
WD40 238 276 2.24e-2 SMART
low complexity region 555 568 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000157787
Predicted Effect noncoding transcript
Transcript: ENSMUST00000214417
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.0%
  • 20x: 93.9%
Validation Efficiency 100% (39/39)
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700122O11Rik A G 17: 48,347,672 (GRCm39) S211P possibly damaging Het
Abcb11 T C 2: 69,112,996 (GRCm39) T674A probably benign Het
Acad11 G T 9: 103,972,758 (GRCm39) E484* probably null Het
Ankhd1 A T 18: 36,724,509 (GRCm39) D389V probably damaging Het
Asic4 T A 1: 75,449,687 (GRCm39) L439* probably null Het
Atp13a2 A G 4: 140,730,529 (GRCm39) T808A probably damaging Het
Capn13 C A 17: 73,689,985 (GRCm39) V9L probably benign Het
Chst11 A G 10: 83,027,302 (GRCm39) Y243C probably damaging Het
Ctdp1 A T 18: 80,494,478 (GRCm39) W308R probably damaging Het
Dnttip2 A G 3: 122,069,172 (GRCm39) E129G possibly damaging Het
Dock5 A G 14: 68,062,097 (GRCm39) S424P possibly damaging Het
Ebf1 C T 11: 44,883,168 (GRCm39) H469Y probably damaging Het
Efhc1 A T 1: 21,030,573 (GRCm39) N169Y probably damaging Het
Elmo1 T C 13: 20,557,331 (GRCm39) L424P probably damaging Het
Ighv1-59 A G 12: 115,299,003 (GRCm39) V16A probably damaging Het
Kcnc1 T G 7: 46,076,821 (GRCm39) C208G probably damaging Het
Kif13b A T 14: 64,982,323 (GRCm39) probably null Het
Lilra6 T A 7: 3,917,387 (GRCm39) N203Y probably benign Het
Mrtfa T C 15: 80,897,917 (GRCm39) T787A probably benign Het
Myh8 A T 11: 67,180,488 (GRCm39) K575* probably null Het
Or2aj5 A T 16: 19,425,109 (GRCm39) L103H probably damaging Het
Phrf1 T C 7: 140,840,309 (GRCm39) I1168T possibly damaging Het
Pla2g12a T A 3: 129,682,606 (GRCm39) H59Q probably benign Het
Ralbp1 A G 17: 66,168,270 (GRCm39) V345A probably damaging Het
Ryr3 C T 2: 112,697,723 (GRCm39) V894M possibly damaging Het
Sec24b T A 3: 129,834,946 (GRCm39) Y84F probably damaging Het
Slc22a26 T C 19: 7,779,865 (GRCm39) probably benign Het
Smc1b C T 15: 84,976,232 (GRCm39) R825Q probably benign Het
Spats1 C T 17: 45,763,599 (GRCm39) probably null Het
Tbk1 T A 10: 121,414,526 (GRCm39) N63Y probably damaging Het
Tbl1xr1 C T 3: 22,194,698 (GRCm39) probably benign Het
Top2b T A 14: 16,409,854 (GRCm38) D840E possibly damaging Het
Trpc3 T A 3: 36,716,907 (GRCm39) Y377F possibly damaging Het
Uba6 C T 5: 86,272,262 (GRCm39) R778K probably benign Het
Vmn2r101 A T 17: 19,809,146 (GRCm39) I92F probably damaging Het
Vmn2r106 C T 17: 20,488,725 (GRCm39) C558Y probably damaging Het
Vmn2r70 G T 7: 85,215,305 (GRCm39) F76L probably benign Het
Vwa3b A G 1: 37,102,723 (GRCm39) probably benign Het
Zfp407 T A 18: 84,578,474 (GRCm39) T880S probably damaging Het
Zfp64 C A 2: 168,735,997 (GRCm39) G560V probably benign Het
Other mutations in Nedd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00764:Nedd1 APN 10 92,530,836 (GRCm39) splice site probably benign
IGL00988:Nedd1 APN 10 92,525,548 (GRCm39) missense possibly damaging 0.71
IGL01563:Nedd1 APN 10 92,534,031 (GRCm39) critical splice donor site probably null
IGL01588:Nedd1 APN 10 92,522,124 (GRCm39) missense probably benign 0.12
IGL01988:Nedd1 APN 10 92,550,021 (GRCm39) missense probably benign 0.39
IGL02706:Nedd1 APN 10 92,522,147 (GRCm39) missense possibly damaging 0.88
IGL02938:Nedd1 APN 10 92,525,519 (GRCm39) nonsense probably null
IGL03011:Nedd1 APN 10 92,525,503 (GRCm39) missense possibly damaging 0.92
Brainless UTSW 10 92,526,635 (GRCm39) missense probably benign 0.01
R0125:Nedd1 UTSW 10 92,527,791 (GRCm39) missense possibly damaging 0.93
R0173:Nedd1 UTSW 10 92,534,745 (GRCm39) missense probably benign 0.30
R0244:Nedd1 UTSW 10 92,552,127 (GRCm39) intron probably benign
R0645:Nedd1 UTSW 10 92,527,693 (GRCm39) splice site probably null
R0791:Nedd1 UTSW 10 92,555,476 (GRCm39) missense probably damaging 1.00
R1490:Nedd1 UTSW 10 92,536,660 (GRCm39) missense probably damaging 1.00
R1522:Nedd1 UTSW 10 92,555,476 (GRCm39) missense probably damaging 1.00
R1797:Nedd1 UTSW 10 92,534,601 (GRCm39) missense possibly damaging 0.46
R1984:Nedd1 UTSW 10 92,550,022 (GRCm39) missense possibly damaging 0.63
R2474:Nedd1 UTSW 10 92,555,465 (GRCm39) missense probably damaging 0.99
R2877:Nedd1 UTSW 10 92,549,988 (GRCm39) missense possibly damaging 0.89
R2883:Nedd1 UTSW 10 92,530,860 (GRCm39) missense probably damaging 0.98
R4694:Nedd1 UTSW 10 92,555,444 (GRCm39) missense probably benign 0.00
R4798:Nedd1 UTSW 10 92,534,772 (GRCm39) missense probably benign 0.00
R4830:Nedd1 UTSW 10 92,522,120 (GRCm39) missense probably damaging 1.00
R4963:Nedd1 UTSW 10 92,530,893 (GRCm39) missense probably damaging 1.00
R5174:Nedd1 UTSW 10 92,547,074 (GRCm39) missense possibly damaging 0.77
R5329:Nedd1 UTSW 10 92,522,102 (GRCm39) missense probably damaging 1.00
R5404:Nedd1 UTSW 10 92,552,054 (GRCm39) missense probably benign 0.04
R5534:Nedd1 UTSW 10 92,530,894 (GRCm39) missense probably benign 0.01
R6045:Nedd1 UTSW 10 92,530,962 (GRCm39) nonsense probably null
R6154:Nedd1 UTSW 10 92,534,104 (GRCm39) missense possibly damaging 0.65
R6692:Nedd1 UTSW 10 92,534,199 (GRCm39) missense possibly damaging 0.88
R6693:Nedd1 UTSW 10 92,534,199 (GRCm39) missense possibly damaging 0.88
R6943:Nedd1 UTSW 10 92,547,168 (GRCm39) missense probably damaging 1.00
R7011:Nedd1 UTSW 10 92,526,635 (GRCm39) missense probably benign 0.01
R7406:Nedd1 UTSW 10 92,547,185 (GRCm39) splice site probably null
R7455:Nedd1 UTSW 10 92,536,787 (GRCm39) missense probably benign 0.01
R7587:Nedd1 UTSW 10 92,534,592 (GRCm39) missense probably benign 0.01
R7745:Nedd1 UTSW 10 92,550,034 (GRCm39) missense probably benign
R8104:Nedd1 UTSW 10 92,527,778 (GRCm39) missense probably damaging 1.00
R8209:Nedd1 UTSW 10 92,527,797 (GRCm39) missense probably benign
R8226:Nedd1 UTSW 10 92,527,797 (GRCm39) missense probably benign
R8925:Nedd1 UTSW 10 92,558,258 (GRCm39) start gained probably benign
R8927:Nedd1 UTSW 10 92,558,258 (GRCm39) start gained probably benign
Predicted Primers PCR Primer
(F):5'- TGACAGGCTCCAGAAGTGTTC -3'
(R):5'- TTGGGAGACATCTTAAGCATATGGC -3'

Sequencing Primer
(F):5'- GTGTTCTTCAGTGATTAAAAACTGGC -3'
(R):5'- ATATGGCGTTTCCTTTCTTTCCCAG -3'
Posted On 2018-06-06