Mutagenetix > Incidental Mutation

Incidental Mutation 'R6492:Exo5'

522955

Institutional Source

Beutler Lab

Gene Symbol

Exo5

Ensembl Gene

ENSMUSG00000028629

Gene Name

exonuclease 5

Synonyms

Dem1, 3110037I16Rik

MMRRC Submission

044624-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6492 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

120778399-120782202 bp(-) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

A to G at 120778734 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000136408 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030375] [ENSMUST00000144114] [ENSMUST00000156836] [ENSMUST00000177880]

AlphaFold

Q9CXP9

Predicted Effect

probably benign
Transcript: ENSMUST00000030375

SMART Domains

Protein: ENSMUSP00000030375
Gene: ENSMUSG00000028629

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Pfam:Exo5	71	355	1.3e-82	PFAM
Pfam:PDDEXK_1	92	353	2.4e-6	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000144114

SMART Domains

Protein: ENSMUSP00000116454
Gene: ENSMUSG00000028629

Domain	Start	End	E-Value	Type
Pfam:Exo5	1	141	2.8e-38	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156836

SMART Domains

Protein: ENSMUSP00000118041
Gene: ENSMUSG00000028629

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Pfam:Exo5	71	133	1.7e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000177880

SMART Domains

Protein: ENSMUSP00000136408
Gene: ENSMUSG00000028629

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Pfam:Exo5	71	196	1.1e-30	PFAM
Pfam:PDDEXK_1	94	353	6.5e-7	PFAM
Pfam:Exo5	190	355	1.5e-28	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.6%
20x: 92.5%

Validation Efficiency

100% (60/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a single-stranded DNA (ssDNA)-specific exonuclease that can slide along the DNA before cutting it. However, human replication protein A binds ssDNA and restricts sliding of the encoded protein, providing a 5'-directionality to the enzyme. This protein localizes to nuclear repair loci after DNA damage. [provided by RefSeq, Nov 2016]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	C	T	6: 121,631,464 (GRCm39)	T587I	probably benign	Het
Abl1	T	A	2: 31,691,667 (GRCm39)	M1062K	probably benign	Het
Agbl4	G	A	4: 111,404,469 (GRCm39)	D272N	probably damaging	Het
Apob	A	T	12: 8,058,261 (GRCm39)	I2215F	probably damaging	Het
Atp10b	A	T	11: 43,109,784 (GRCm39)	Q821H	probably damaging	Het
Atp1a3	T	C	7: 24,678,729 (GRCm39)	Y971C	probably damaging	Het
Atp6ap1l	A	T	13: 91,031,841 (GRCm39)	H280Q	probably damaging	Het
B4galt2	A	T	4: 117,734,164 (GRCm39)	M291K	probably damaging	Het
Cachd1	G	T	4: 100,809,315 (GRCm39)	V267F	possibly damaging	Het
Cadm2	G	T	16: 66,581,715 (GRCm39)	L188M	probably damaging	Het
Ccn6	C	T	10: 39,030,983 (GRCm39)	G180D	probably benign	Het
Ceacam19	T	C	7: 19,616,517 (GRCm39)	N199S	probably benign	Het
Chrna5	A	G	9: 54,905,347 (GRCm39)	D53G	probably benign	Het
Clca4a	T	A	3: 144,663,059 (GRCm39)	T597S	probably benign	Het
Cluap1	T	A	16: 3,746,476 (GRCm39)	M279K	probably benign	Het
Cngb1	T	A	8: 95,991,052 (GRCm39)	M717L	probably benign	Het
Cp	T	C	3: 20,036,186 (GRCm39)	V777A	probably benign	Het
Drosha	A	G	15: 12,861,792 (GRCm39)	D594G	probably benign	Het
Gm10549	C	A	18: 33,597,358 (GRCm39)		probably benign	Het
Gprc5b	A	G	7: 118,583,800 (GRCm39)	I23T	possibly damaging	Het
Ikbke	T	C	1: 131,186,955 (GRCm39)	Y579C	probably damaging	Het
Ikzf2	T	C	1: 69,578,201 (GRCm39)	Y362C	probably damaging	Het
Itfg1	A	G	8: 86,466,978 (GRCm39)	V365A	probably benign	Het
Josd2	T	C	7: 44,120,578 (GRCm39)	I105T	probably damaging	Het
Mc3r	G	A	2: 172,091,074 (GRCm39)	A99T	possibly damaging	Het
Mettl22	T	A	16: 8,306,755 (GRCm39)		probably null	Het
Mgat5	A	G	1: 127,399,301 (GRCm39)	I619V	probably benign	Het
Nin	T	C	12: 70,101,308 (GRCm39)	I430V	probably benign	Het
Or52n2c	C	A	7: 104,574,852 (GRCm39)	A40S	possibly damaging	Het
Or5au1	A	G	14: 52,272,902 (GRCm39)	F222S	probably benign	Het
Or5j3	T	C	2: 86,128,990 (GRCm39)	F277L	probably benign	Het
Or5w22	C	G	2: 87,363,085 (GRCm39)	A236G	possibly damaging	Het
Or8k3	T	A	2: 86,058,731 (GRCm39)	I195F	possibly damaging	Het
Parvb	T	C	15: 84,188,073 (GRCm39)	L272P	probably damaging	Het
Pde2a	A	G	7: 101,149,649 (GRCm39)	K180E	possibly damaging	Het
Pik3c3	C	T	18: 30,457,615 (GRCm39)	T736M	probably damaging	Het
Plcb4	C	T	2: 135,814,991 (GRCm39)	R760*	probably null	Het
Pramel6	C	T	2: 87,340,766 (GRCm39)	T366I	probably benign	Het
Prr29	C	T	11: 106,266,062 (GRCm39)	R42W	probably damaging	Het
Prss12	A	G	3: 123,241,048 (GRCm39)	I81V	probably benign	Het
Ptpn13	A	G	5: 103,649,478 (GRCm39)	T294A	probably benign	Het
Ptprc	A	T	1: 138,041,300 (GRCm39)		probably null	Het
Sin3b	T	A	8: 73,460,118 (GRCm39)		probably null	Het
Slco5a1	T	C	1: 13,060,151 (GRCm39)	Y190C	probably damaging	Het
Slco6c1	T	G	1: 97,053,538 (GRCm39)	Y121S	probably damaging	Het
Srcap	G	T	7: 127,121,317 (GRCm39)	G217*	probably null	Het
Ss18	A	T	18: 14,784,145 (GRCm39)	M181K	probably damaging	Het
Synm	T	C	7: 67,385,809 (GRCm39)	T176A	probably benign	Het
Taf3	T	C	2: 9,955,971 (GRCm39)	E579G	probably damaging	Het
Taf7	A	G	18: 37,776,159 (GRCm39)	I136T	probably damaging	Het
Tfap2d	G	C	1: 19,174,702 (GRCm39)	G52R	probably benign	Het
Tyrp1	A	G	4: 80,759,018 (GRCm39)	D297G	probably null	Het
Uox	C	T	3: 146,330,332 (GRCm39)	R163*	probably null	Het
Wwp1	G	A	4: 19,650,299 (GRCm39)	S289L	possibly damaging	Het
Xbp1	T	C	11: 5,471,005 (GRCm39)	V4A	probably benign	Het
Zbtb17	G	A	4: 141,190,694 (GRCm39)	G171S	probably benign	Het
Zbtb2	T	C	10: 4,319,711 (GRCm39)	Y105C	probably damaging	Het
Zeb2	T	C	2: 45,000,508 (GRCm39)		probably benign	Het
Zkscan8	A	T	13: 21,709,397 (GRCm39)	I167N	probably benign	Het

Other mutations in Exo5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02932:Exo5	APN	4	120,779,742 (GRCm39)	missense	probably benign	0.01
IGL03063:Exo5	APN	4	120,778,830 (GRCm39)	missense	possibly damaging	0.60
R0417:Exo5	UTSW	4	120,779,269 (GRCm39)	missense	probably damaging	1.00
R0540:Exo5	UTSW	4	120,779,178 (GRCm39)	missense	probably damaging	0.99
R0609:Exo5	UTSW	4	120,778,881 (GRCm39)	missense	probably damaging	1.00
R1126:Exo5	UTSW	4	120,779,322 (GRCm39)	missense	probably damaging	1.00
R2401:Exo5	UTSW	4	120,779,194 (GRCm39)	missense	probably damaging	0.97
R4658:Exo5	UTSW	4	120,779,748 (GRCm39)	missense	probably benign
R5093:Exo5	UTSW	4	120,779,514 (GRCm39)	missense	probably damaging	1.00
R5125:Exo5	UTSW	4	120,778,734 (GRCm39)	critical splice donor site	probably null
R5178:Exo5	UTSW	4	120,778,734 (GRCm39)	critical splice donor site	probably null
R6736:Exo5	UTSW	4	120,778,953 (GRCm39)	missense	probably damaging	0.99
R7602:Exo5	UTSW	4	120,778,818 (GRCm39)	missense	probably benign	0.00
R8425:Exo5	UTSW	4	120,779,560 (GRCm39)	missense	probably benign	0.04
R8699:Exo5	UTSW	4	120,779,193 (GRCm39)	missense	probably damaging	1.00
R8806:Exo5	UTSW	4	120,779,602 (GRCm39)	missense	probably benign	0.01
R9057:Exo5	UTSW	4	120,779,186 (GRCm39)	missense	probably damaging	1.00
R9448:Exo5	UTSW	4	120,778,888 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CCTGAAAGCTCCAAGGTCAC -3'
(R):5'- CACAGAGATTGTAGCCTTTGAAG -3'

Sequencing Primer
(F):5'- TGAAAGCTCCAAGGTCACTCTAAC -3'
(R):5'- GATTGTAGCCTTTGAAGAGAAGG -3'

Posted On

2018-06-06