Incidental Mutation 'R6575:Cog1'
ID |
523411 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Cog1
|
Ensembl Gene |
ENSMUSG00000018661 |
Gene Name |
component of oligomeric golgi complex 1 |
Synonyms |
|
MMRRC Submission |
044699-MU
|
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.853)
|
Stock # |
R6575 (G1)
|
Quality Score |
225.009 |
Status
|
Not validated
|
Chromosome |
11 |
Chromosomal Location |
113539995-113557880 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to A
at 113546887 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Glutamine to Lysine
at position 494
(Q494K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000018805
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000018805]
[ENSMUST00000063776]
[ENSMUST00000152653]
[ENSMUST00000148736]
|
AlphaFold |
Q9Z160 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000018805
AA Change: Q494K
PolyPhen 2
Score 0.363 (Sensitivity: 0.90; Specificity: 0.89)
|
SMART Domains |
Protein: ENSMUSP00000018805 Gene: ENSMUSG00000018661 AA Change: Q494K
Domain | Start | End | E-Value | Type |
Pfam:Vps51
|
12 |
93 |
1.5e-17 |
PFAM |
low complexity region
|
95 |
110 |
N/A |
INTRINSIC |
low complexity region
|
144 |
158 |
N/A |
INTRINSIC |
low complexity region
|
518 |
530 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000063776
|
SMART Domains |
Protein: ENSMUSP00000068394 Gene: ENSMUSG00000018661
Domain | Start | End | E-Value | Type |
Pfam:Vps51
|
12 |
93 |
4.7e-22 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123085
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000134418
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000137878
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000142069
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000152653
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000148736
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.7%
- 20x: 93.2%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is one of eight proteins (Cog1-8) which form a Golgi-localized complex (COG) required for normal Golgi morphology and function. It is thought that this protein is required for steps in the normal medial and trans Golgi-associated processing of glycoconjugates and plays a role in the organization of the Golgi-localized complex. [provided by RefSeq, Jul 2008]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 49 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2900026A02Rik |
T |
C |
5: 113,330,683 (GRCm39) |
Y1177C |
probably damaging |
Het |
Acnat1 |
A |
G |
4: 49,450,785 (GRCm39) |
Y109H |
possibly damaging |
Het |
Adgrf3 |
T |
A |
5: 30,401,522 (GRCm39) |
K835N |
possibly damaging |
Het |
Afg1l |
T |
C |
10: 42,194,712 (GRCm39) |
D360G |
probably damaging |
Het |
Ap3s1 |
C |
T |
18: 46,887,448 (GRCm39) |
T27M |
probably benign |
Het |
Atp8b4 |
A |
G |
2: 126,256,284 (GRCm39) |
L225P |
probably damaging |
Het |
Bicra |
G |
A |
7: 15,713,056 (GRCm39) |
T997I |
probably benign |
Het |
Bod1l |
T |
C |
5: 41,995,411 (GRCm39) |
R112G |
probably damaging |
Het |
Cabin1 |
T |
C |
10: 75,561,535 (GRCm39) |
T989A |
possibly damaging |
Het |
Cyb5rl |
T |
C |
4: 106,942,550 (GRCm39) |
Y160H |
probably benign |
Het |
Dnajb8 |
A |
G |
6: 88,200,057 (GRCm39) |
N198D |
probably damaging |
Het |
Eif1ad11 |
T |
C |
12: 87,994,117 (GRCm39) |
I115T |
probably damaging |
Het |
Eif3l |
C |
A |
15: 78,970,778 (GRCm39) |
Q351K |
possibly damaging |
Het |
Esr1 |
T |
C |
10: 4,916,301 (GRCm39) |
|
probably benign |
Het |
Fam3c |
G |
T |
6: 22,329,607 (GRCm39) |
A40D |
probably damaging |
Het |
Fcrla |
A |
G |
1: 170,749,797 (GRCm39) |
S87P |
probably damaging |
Het |
Glra1 |
A |
G |
11: 55,411,822 (GRCm39) |
Y246H |
probably damaging |
Het |
Gm45871 |
T |
A |
18: 90,609,844 (GRCm39) |
C361S |
probably damaging |
Het |
Greb1l |
A |
G |
18: 10,547,347 (GRCm39) |
N1522D |
possibly damaging |
Het |
Hcn4 |
T |
C |
9: 58,731,435 (GRCm39) |
M214T |
unknown |
Het |
Heatr5b |
A |
T |
17: 79,070,418 (GRCm39) |
V1665E |
probably damaging |
Het |
Hemgn |
C |
A |
4: 46,395,990 (GRCm39) |
M415I |
possibly damaging |
Het |
Hibadh |
G |
A |
6: 52,524,013 (GRCm39) |
T295I |
probably damaging |
Het |
Iars1 |
T |
C |
13: 49,878,745 (GRCm39) |
L947P |
probably damaging |
Het |
Icam2 |
G |
A |
11: 106,269,585 (GRCm39) |
T178I |
probably damaging |
Het |
Lbr |
A |
G |
1: 181,663,763 (GRCm39) |
S86P |
probably damaging |
Het |
Lipe |
G |
A |
7: 25,082,749 (GRCm39) |
T801I |
probably benign |
Het |
Lrp6 |
T |
C |
6: 134,518,934 (GRCm39) |
T44A |
possibly damaging |
Het |
Malrd1 |
A |
G |
2: 15,847,439 (GRCm39) |
H1193R |
probably benign |
Het |
Mroh2a |
GCCC |
GC |
1: 88,159,979 (GRCm39) |
|
probably null |
Het |
Myh10 |
A |
G |
11: 68,699,676 (GRCm39) |
I1671V |
probably benign |
Het |
Or2c1 |
A |
G |
16: 3,656,894 (GRCm39) |
D19G |
probably benign |
Het |
Osbpl9 |
T |
C |
4: 108,930,129 (GRCm39) |
D334G |
possibly damaging |
Het |
Pdcd11 |
A |
G |
19: 47,098,117 (GRCm39) |
D801G |
probably damaging |
Het |
Pfdn4 |
C |
A |
2: 170,358,556 (GRCm39) |
D16E |
probably benign |
Het |
Pmp22 |
C |
T |
11: 63,049,099 (GRCm39) |
A114V |
probably damaging |
Het |
Rrp9 |
C |
T |
9: 106,360,778 (GRCm39) |
T253I |
probably damaging |
Het |
Speer1m |
A |
T |
5: 11,970,612 (GRCm39) |
K62* |
probably null |
Het |
Tnrc6a |
A |
G |
7: 122,769,133 (GRCm39) |
T308A |
probably damaging |
Het |
Trgv4 |
T |
A |
13: 19,369,250 (GRCm39) |
C34S |
probably benign |
Het |
Trhr |
A |
G |
15: 44,092,602 (GRCm39) |
M280V |
possibly damaging |
Het |
Trp53bp1 |
G |
A |
2: 121,059,084 (GRCm39) |
H926Y |
probably damaging |
Het |
Trpv5 |
A |
T |
6: 41,652,903 (GRCm39) |
I90K |
probably benign |
Het |
Ttn |
T |
C |
2: 76,719,259 (GRCm39) |
|
probably benign |
Het |
Vav1 |
A |
C |
17: 57,612,280 (GRCm39) |
R513S |
probably damaging |
Het |
Vmn2r100 |
A |
T |
17: 19,741,671 (GRCm39) |
T128S |
probably benign |
Het |
Zfp687 |
T |
C |
3: 94,915,700 (GRCm39) |
Y1024C |
probably damaging |
Het |
Zfp938 |
C |
A |
10: 82,061,160 (GRCm39) |
G487* |
probably null |
Het |
Znrf2 |
A |
G |
6: 54,855,430 (GRCm39) |
Y73C |
probably damaging |
Het |
|
Other mutations in Cog1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02407:Cog1
|
APN |
11 |
113,544,852 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02631:Cog1
|
APN |
11 |
113,547,304 (GRCm39) |
nonsense |
probably null |
|
IGL03258:Cog1
|
APN |
11 |
113,545,919 (GRCm39) |
nonsense |
probably null |
|
R0243:Cog1
|
UTSW |
11 |
113,547,821 (GRCm39) |
unclassified |
probably benign |
|
R0336:Cog1
|
UTSW |
11 |
113,553,076 (GRCm39) |
missense |
probably benign |
0.28 |
R1061:Cog1
|
UTSW |
11 |
113,542,863 (GRCm39) |
missense |
probably benign |
|
R1539:Cog1
|
UTSW |
11 |
113,543,058 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1757:Cog1
|
UTSW |
11 |
113,543,130 (GRCm39) |
missense |
possibly damaging |
0.71 |
R1782:Cog1
|
UTSW |
11 |
113,544,792 (GRCm39) |
missense |
probably benign |
|
R1924:Cog1
|
UTSW |
11 |
113,547,038 (GRCm39) |
missense |
probably benign |
|
R2120:Cog1
|
UTSW |
11 |
113,540,424 (GRCm39) |
missense |
probably damaging |
0.98 |
R2121:Cog1
|
UTSW |
11 |
113,540,424 (GRCm39) |
missense |
probably damaging |
0.98 |
R2137:Cog1
|
UTSW |
11 |
113,550,127 (GRCm39) |
missense |
probably damaging |
1.00 |
R3809:Cog1
|
UTSW |
11 |
113,545,836 (GRCm39) |
missense |
probably benign |
|
R4042:Cog1
|
UTSW |
11 |
113,551,836 (GRCm39) |
missense |
probably damaging |
1.00 |
R4287:Cog1
|
UTSW |
11 |
113,544,853 (GRCm39) |
missense |
probably damaging |
0.99 |
R4679:Cog1
|
UTSW |
11 |
113,543,116 (GRCm39) |
missense |
probably damaging |
1.00 |
R4716:Cog1
|
UTSW |
11 |
113,547,923 (GRCm39) |
missense |
probably damaging |
1.00 |
R4774:Cog1
|
UTSW |
11 |
113,548,253 (GRCm39) |
missense |
possibly damaging |
0.84 |
R7026:Cog1
|
UTSW |
11 |
113,540,415 (GRCm39) |
missense |
probably damaging |
1.00 |
R7233:Cog1
|
UTSW |
11 |
113,540,556 (GRCm39) |
missense |
probably damaging |
1.00 |
R8013:Cog1
|
UTSW |
11 |
113,546,990 (GRCm39) |
missense |
probably damaging |
1.00 |
R8014:Cog1
|
UTSW |
11 |
113,546,990 (GRCm39) |
missense |
probably damaging |
1.00 |
R8027:Cog1
|
UTSW |
11 |
113,543,215 (GRCm39) |
missense |
probably damaging |
1.00 |
R8865:Cog1
|
UTSW |
11 |
113,549,324 (GRCm39) |
missense |
probably benign |
0.33 |
R9071:Cog1
|
UTSW |
11 |
113,546,939 (GRCm39) |
missense |
probably damaging |
0.99 |
R9110:Cog1
|
UTSW |
11 |
113,544,807 (GRCm39) |
missense |
possibly damaging |
0.80 |
R9255:Cog1
|
UTSW |
11 |
113,547,019 (GRCm39) |
missense |
probably benign |
|
Z1176:Cog1
|
UTSW |
11 |
113,542,808 (GRCm39) |
missense |
probably damaging |
0.98 |
|
Predicted Primers |
PCR Primer
(F):5'- ACACTGACCAGAGAAGGCTTTG -3'
(R):5'- CTGCGTATCGATCAAAGGCAG -3'
Sequencing Primer
(F):5'- GAGAAGGCTTTGAATCCATCTCC -3'
(R):5'- TCGATCAAAGGCAGAGTTCTTAGGC -3'
|
Posted On |
2018-06-22 |