Incidental Mutation 'R6577:Clec10a'
ID |
523550 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Clec10a
|
Ensembl Gene |
ENSMUSG00000000318 |
Gene Name |
C-type lectin domain family 10, member A |
Synonyms |
CD301a, Mgl1 |
MMRRC Submission |
044701-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R6577 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
11 |
Chromosomal Location |
70057449-70061662 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 70061436 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Serine to Proline
at position 274
(S274P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000137447
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000000327]
[ENSMUST00000102571]
[ENSMUST00000144935]
[ENSMUST00000152635]
[ENSMUST00000153959]
[ENSMUST00000178945]
[ENSMUST00000178567]
|
AlphaFold |
P49300 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000000327
|
SMART Domains |
Protein: ENSMUSP00000000327 Gene: ENSMUSG00000000318
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
1 |
164 |
8.5e-64 |
PFAM |
CLECT
|
174 |
298 |
1.24e-38 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000102571
|
SMART Domains |
Protein: ENSMUSP00000099631 Gene: ENSMUSG00000000318
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
1 |
163 |
3.9e-65 |
PFAM |
CLECT
|
173 |
297 |
1.24e-38 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000143298
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000144935
|
SMART Domains |
Protein: ENSMUSP00000136500 Gene: ENSMUSG00000000318
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
19 |
126 |
2e-35 |
PFAM |
CLECT
|
136 |
212 |
1.16e-6 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000150966
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000152635
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000153959
|
SMART Domains |
Protein: ENSMUSP00000117772 Gene: ENSMUSG00000000318
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
1 |
41 |
6e-19 |
PFAM |
Pfam:Lectin_C
|
68 |
102 |
2.3e-6 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000178945
AA Change: S274P
PolyPhen 2
Score 0.081 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000137447 Gene: ENSMUSG00000000318 AA Change: S274P
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
7 |
164 |
3.6e-51 |
PFAM |
CLECT
|
174 |
292 |
1e-24 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000178567
|
SMART Domains |
Protein: ENSMUSP00000136322 Gene: ENSMUSG00000000318
Domain | Start | End | E-Value | Type |
Pfam:Lectin_N
|
1 |
57 |
1.5e-26 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000180106
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.6%
- 20x: 93.1%
|
Validation Efficiency |
97% (38/39) |
MGI Phenotype |
PHENOTYPE: Homozygotes for a targeted null mutation exhibit elevated red blood cell counts but appear to be otherwise normal. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Api5 |
T |
C |
2: 94,252,726 (GRCm39) |
Y348C |
probably benign |
Het |
Ark2n |
T |
C |
18: 77,740,855 (GRCm39) |
T285A |
probably benign |
Het |
Arl14 |
A |
G |
3: 69,130,405 (GRCm39) |
E184G |
probably benign |
Het |
Asap3 |
T |
C |
4: 135,965,541 (GRCm39) |
|
probably null |
Het |
Atp11b |
T |
A |
3: 35,893,311 (GRCm39) |
V36E |
probably damaging |
Het |
Atp13a4 |
C |
T |
16: 29,298,659 (GRCm39) |
S100N |
probably benign |
Het |
Cd27 |
T |
C |
6: 125,213,756 (GRCm39) |
T34A |
probably benign |
Het |
Cntnap2 |
C |
T |
6: 46,147,206 (GRCm39) |
T484I |
probably benign |
Het |
Cpsf1 |
CCCCTGCATGAGGCAGGTCCC |
CCCC |
15: 76,481,655 (GRCm39) |
|
probably null |
Het |
Cracd |
A |
T |
5: 77,013,947 (GRCm39) |
|
probably benign |
Het |
Def8 |
T |
C |
8: 124,183,449 (GRCm39) |
S304P |
probably benign |
Het |
Dgkd |
G |
A |
1: 87,867,962 (GRCm39) |
V299M |
probably damaging |
Het |
Ephb2 |
T |
C |
4: 136,384,861 (GRCm39) |
D850G |
probably damaging |
Het |
Gjd3 |
T |
C |
11: 102,691,130 (GRCm39) |
N291S |
possibly damaging |
Het |
Hc |
T |
C |
2: 34,922,138 (GRCm39) |
I563V |
probably benign |
Het |
Hells |
C |
T |
19: 38,919,909 (GRCm39) |
Q20* |
probably null |
Het |
Hid1 |
G |
C |
11: 115,245,462 (GRCm39) |
P448A |
possibly damaging |
Het |
Igkv8-24 |
C |
T |
6: 70,193,947 (GRCm39) |
R87H |
possibly damaging |
Het |
Irf6 |
A |
G |
1: 192,851,662 (GRCm39) |
S418G |
probably damaging |
Het |
Kcnv2 |
T |
A |
19: 27,301,420 (GRCm39) |
C424S |
possibly damaging |
Het |
Lmln |
T |
A |
16: 32,927,370 (GRCm39) |
|
probably null |
Het |
Myo1a |
A |
T |
10: 127,551,189 (GRCm39) |
I678F |
possibly damaging |
Het |
Nup98 |
A |
C |
7: 101,778,053 (GRCm39) |
|
probably null |
Het |
Papolg |
GGACTTGGGATACTTACGCTTTG |
GG |
11: 23,829,857 (GRCm39) |
|
probably benign |
Het |
Ppfibp1 |
T |
A |
6: 146,901,153 (GRCm39) |
|
probably null |
Het |
Sardh |
T |
C |
2: 27,108,867 (GRCm39) |
T623A |
possibly damaging |
Het |
Scml4 |
A |
G |
10: 42,823,107 (GRCm39) |
N251D |
probably damaging |
Het |
Skap1 |
T |
C |
11: 96,416,870 (GRCm39) |
Y52H |
probably damaging |
Het |
Srp68 |
G |
A |
11: 116,156,290 (GRCm39) |
R113W |
probably damaging |
Het |
Srsf12 |
T |
C |
4: 33,209,196 (GRCm39) |
|
probably benign |
Het |
Stat5b |
A |
G |
11: 100,688,526 (GRCm39) |
M312T |
probably benign |
Het |
Tma7 |
T |
C |
9: 108,911,262 (GRCm39) |
|
probably benign |
Het |
Tmem120b |
T |
G |
5: 123,254,710 (GRCm39) |
F304V |
probably damaging |
Het |
Tns3 |
G |
A |
11: 8,499,057 (GRCm39) |
L9F |
probably damaging |
Het |
Tns3 |
G |
T |
11: 8,499,058 (GRCm39) |
D8E |
probably damaging |
Het |
Tsc2 |
C |
T |
17: 24,829,473 (GRCm39) |
A765T |
probably damaging |
Het |
Tut7 |
C |
T |
13: 59,955,975 (GRCm39) |
C45Y |
probably damaging |
Het |
Uba1y |
A |
G |
Y: 825,465 (GRCm39) |
I276V |
probably benign |
Homo |
Upb1 |
T |
G |
10: 75,248,723 (GRCm39) |
L81R |
probably damaging |
Het |
Uros |
C |
A |
7: 133,302,569 (GRCm39) |
C73F |
probably damaging |
Het |
Zfp820 |
T |
C |
17: 22,038,384 (GRCm39) |
I315V |
probably benign |
Het |
|
Other mutations in Clec10a |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02932:Clec10a
|
APN |
11 |
70,060,554 (GRCm39) |
splice site |
probably benign |
|
IGL02945:Clec10a
|
APN |
11 |
70,061,368 (GRCm39) |
missense |
possibly damaging |
0.94 |
R1264:Clec10a
|
UTSW |
11 |
70,060,567 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1539:Clec10a
|
UTSW |
11 |
70,060,645 (GRCm39) |
missense |
probably damaging |
1.00 |
R2113:Clec10a
|
UTSW |
11 |
70,060,650 (GRCm39) |
critical splice donor site |
probably null |
|
R2567:Clec10a
|
UTSW |
11 |
70,060,358 (GRCm39) |
critical splice donor site |
probably null |
|
R4597:Clec10a
|
UTSW |
11 |
70,060,806 (GRCm39) |
missense |
probably damaging |
1.00 |
R4907:Clec10a
|
UTSW |
11 |
70,060,797 (GRCm39) |
missense |
probably benign |
0.25 |
R4913:Clec10a
|
UTSW |
11 |
70,060,851 (GRCm39) |
missense |
probably damaging |
1.00 |
R7538:Clec10a
|
UTSW |
11 |
70,060,604 (GRCm39) |
missense |
probably benign |
0.39 |
R8184:Clec10a
|
UTSW |
11 |
70,060,642 (GRCm39) |
missense |
probably damaging |
0.99 |
R9407:Clec10a
|
UTSW |
11 |
70,060,155 (GRCm39) |
missense |
probably damaging |
1.00 |
R9596:Clec10a
|
UTSW |
11 |
70,059,973 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- CTGGGGATATGGCTTAGAGC -3'
(R):5'- GTTGCCTACAATAAGCTGCAC -3'
Sequencing Primer
(F):5'- TTCATAGGAACTGGGCCCCAC -3'
(R):5'- TAAGCTGCACACTGTACAAAATATC -3'
|
Posted On |
2018-06-22 |