Incidental Mutation 'R6603:Fam13a'
ID 525441
Institutional Source Beutler Lab
Gene Symbol Fam13a
Ensembl Gene ENSMUSG00000037709
Gene Name family with sequence similarity 13, member A
Synonyms D430015B01Rik
MMRRC Submission 044726-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6603 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 58910521-59001487 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 58964174 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Arginine at position 86 (K86R)
Ref Sequence ENSEMBL: ENSMUSP00000134135 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089860] [ENSMUST00000173193]
AlphaFold Q8BGI4
Predicted Effect probably benign
Transcript: ENSMUST00000089860
AA Change: K86R

PolyPhen 2 Score 0.095 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000087304
Gene: ENSMUSG00000037709
AA Change: K86R

DomainStartEndE-ValueType
Blast:RhoGAP 19 128 6e-27 BLAST
low complexity region 136 147 N/A INTRINSIC
low complexity region 159 171 N/A INTRINSIC
low complexity region 173 185 N/A INTRINSIC
coiled coil region 336 363 N/A INTRINSIC
low complexity region 419 433 N/A INTRINSIC
coiled coil region 620 645 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000173193
AA Change: K86R

PolyPhen 2 Score 0.311 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000134135
Gene: ENSMUSG00000037709
AA Change: K86R

DomainStartEndE-ValueType
Blast:RhoGAP 21 128 6e-27 BLAST
low complexity region 136 147 N/A INTRINSIC
low complexity region 159 171 N/A INTRINSIC
low complexity region 173 185 N/A INTRINSIC
coiled coil region 336 363 N/A INTRINSIC
low complexity region 419 433 N/A INTRINSIC
coiled coil region 592 617 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173712
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173978
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.5%
  • 10x: 97.7%
  • 20x: 92.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam18 A T 8: 25,155,518 (GRCm39) F167Y possibly damaging Het
Ap3d1 A G 10: 80,549,881 (GRCm39) S755P probably benign Het
Aph1a A T 3: 95,802,808 (GRCm39) N136I probably damaging Het
AU040320 T A 4: 126,686,046 (GRCm39) N207K probably benign Het
Caprin1 A T 2: 103,605,856 (GRCm39) D377E probably benign Het
Col18a1 A G 10: 76,899,811 (GRCm39) probably null Het
Ddi2 T C 4: 141,411,181 (GRCm39) N577S probably damaging Het
Dip2c T A 13: 9,704,624 (GRCm39) probably null Het
Dmbt1 A T 7: 130,648,240 (GRCm39) probably null Het
Fam168b C A 1: 34,875,822 (GRCm39) G21V probably damaging Het
Fbxl8 A T 8: 105,994,842 (GRCm39) D118V probably damaging Het
Garin5b G A 7: 4,761,431 (GRCm39) P427L possibly damaging Het
Git2 C A 5: 114,869,052 (GRCm39) probably null Het
Gm17190 T G 13: 96,218,770 (GRCm39) D35E possibly damaging Het
Gnb4 C T 3: 32,639,295 (GRCm39) D333N probably damaging Het
Has2 T A 15: 56,531,968 (GRCm39) D249V probably damaging Het
Ighv1-23 A G 12: 114,728,141 (GRCm39) S94P probably damaging Het
Itpr2 A G 6: 146,248,669 (GRCm39) I1029T probably damaging Het
Kctd16 T C 18: 40,391,544 (GRCm39) I44T probably benign Het
Kpna1 A G 16: 35,849,890 (GRCm39) probably null Het
Lonrf1 T A 8: 36,690,095 (GRCm39) R654S probably damaging Het
Lrrc49 A C 9: 60,501,052 (GRCm39) probably null Het
Miip T G 4: 147,950,380 (GRCm39) K72T possibly damaging Het
Mink1 C T 11: 70,500,419 (GRCm39) P782S probably damaging Het
Mpped2 A G 2: 106,697,322 (GRCm39) T266A probably benign Het
Naip1 G A 13: 100,559,578 (GRCm39) S1142F probably benign Het
Naip1 C T 13: 100,559,666 (GRCm39) G1113S probably benign Het
Nbr1 A G 11: 101,446,931 (GRCm39) probably benign Het
Necab3 A T 2: 154,396,842 (GRCm39) N46K probably damaging Het
Or51a8 A T 7: 102,549,621 (GRCm39) I16F probably benign Het
Phtf1 C T 3: 103,901,189 (GRCm39) R360C probably damaging Het
Plcl2 A G 17: 50,914,145 (GRCm39) I385V probably benign Het
Prmt8 A T 6: 127,706,376 (GRCm39) F138L probably benign Het
Prpf40a T G 2: 53,042,975 (GRCm39) R436S probably damaging Het
Rab27b T A 18: 70,118,375 (GRCm39) I181F probably damaging Het
Rasgrf1 A G 9: 89,792,310 (GRCm39) E87G probably damaging Het
Scrib T A 15: 75,934,572 (GRCm39) T674S probably benign Het
Slc9a4 A G 1: 40,662,664 (GRCm39) S644G probably benign Het
Slc9a9 G A 9: 94,821,599 (GRCm39) A329T probably damaging Het
Smc4 T C 3: 68,929,794 (GRCm39) probably null Het
Sox7 T A 14: 64,185,637 (GRCm39) H224Q probably benign Het
Spata31 T C 13: 65,070,479 (GRCm39) S876P probably damaging Het
Syndig1 G A 2: 149,845,208 (GRCm39) V244M probably damaging Het
Tas2r113 A T 6: 132,870,421 (GRCm39) I150L probably benign Het
Tasor A G 14: 27,168,343 (GRCm39) Y295C probably damaging Het
Tmem59l G A 8: 70,939,006 (GRCm39) P56L probably benign Het
Tnfrsf8 A T 4: 145,019,168 (GRCm39) D222E possibly damaging Het
Trim52 T C 14: 106,344,483 (GRCm39) L47P probably damaging Het
Ttc34 T A 4: 154,923,762 (GRCm39) I157K probably benign Het
Txndc16 A G 14: 45,389,224 (GRCm39) F492S probably damaging Het
Ubr4 A G 4: 139,182,897 (GRCm39) I428V probably benign Het
Vmn2r41 T A 7: 8,141,359 (GRCm39) I702F probably damaging Het
Wdr12 T A 1: 60,121,783 (GRCm39) H256L probably damaging Het
Xirp2 A G 2: 67,346,888 (GRCm39) H3043R probably benign Het
Xrcc1 C T 7: 24,270,459 (GRCm39) Q500* probably null Het
Zfp583 T C 7: 6,328,475 (GRCm39) N38S probably damaging Het
Other mutations in Fam13a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00265:Fam13a APN 6 58,923,111 (GRCm39) missense probably benign 0.03
IGL00467:Fam13a APN 6 58,917,098 (GRCm39) splice site probably benign
IGL01288:Fam13a APN 6 58,933,712 (GRCm39) missense probably damaging 1.00
IGL01503:Fam13a APN 6 58,933,065 (GRCm39) missense probably damaging 1.00
IGL01532:Fam13a APN 6 58,917,280 (GRCm39) missense probably damaging 0.96
IGL02197:Fam13a APN 6 58,912,586 (GRCm39) missense possibly damaging 0.65
IGL02206:Fam13a APN 6 58,964,204 (GRCm39) missense probably benign 0.00
IGL03189:Fam13a APN 6 58,933,843 (GRCm39) missense probably damaging 0.99
BB009:Fam13a UTSW 6 58,960,873 (GRCm39) critical splice donor site probably null
BB019:Fam13a UTSW 6 58,960,873 (GRCm39) critical splice donor site probably null
R0361:Fam13a UTSW 6 58,964,159 (GRCm39) missense probably benign
R0512:Fam13a UTSW 6 58,933,684 (GRCm39) missense probably damaging 1.00
R0801:Fam13a UTSW 6 58,960,997 (GRCm39) missense probably benign 0.01
R1222:Fam13a UTSW 6 58,912,707 (GRCm39) splice site probably benign
R1378:Fam13a UTSW 6 58,933,736 (GRCm39) missense probably benign 0.04
R1535:Fam13a UTSW 6 58,916,332 (GRCm39) missense probably damaging 0.99
R1614:Fam13a UTSW 6 58,917,169 (GRCm39) missense probably damaging 1.00
R1663:Fam13a UTSW 6 58,931,357 (GRCm39) nonsense probably null
R1809:Fam13a UTSW 6 58,942,045 (GRCm39) critical splice donor site probably null
R1905:Fam13a UTSW 6 58,930,475 (GRCm39) missense probably damaging 1.00
R2568:Fam13a UTSW 6 58,912,594 (GRCm39) missense probably damaging 1.00
R3771:Fam13a UTSW 6 58,964,171 (GRCm39) missense probably benign 0.11
R4654:Fam13a UTSW 6 58,964,152 (GRCm39) missense probably benign
R5244:Fam13a UTSW 6 58,930,459 (GRCm39) nonsense probably null
R5488:Fam13a UTSW 6 59,001,303 (GRCm39) missense probably null 1.00
R5489:Fam13a UTSW 6 59,001,303 (GRCm39) missense probably null 1.00
R5712:Fam13a UTSW 6 58,933,684 (GRCm39) missense probably damaging 1.00
R5729:Fam13a UTSW 6 58,916,292 (GRCm39) missense probably damaging 0.99
R5969:Fam13a UTSW 6 58,942,183 (GRCm39) missense probably damaging 1.00
R6074:Fam13a UTSW 6 58,966,723 (GRCm39) splice site probably null
R6275:Fam13a UTSW 6 58,931,242 (GRCm39) missense probably damaging 0.98
R6306:Fam13a UTSW 6 58,917,239 (GRCm39) missense probably benign 0.02
R6338:Fam13a UTSW 6 58,930,484 (GRCm39) missense probably damaging 1.00
R7508:Fam13a UTSW 6 58,964,269 (GRCm39) missense probably damaging 1.00
R7516:Fam13a UTSW 6 58,932,248 (GRCm39) missense probably damaging 1.00
R7688:Fam13a UTSW 6 58,912,692 (GRCm39) missense probably benign 0.05
R7728:Fam13a UTSW 6 58,931,284 (GRCm39) missense possibly damaging 0.79
R7932:Fam13a UTSW 6 58,960,873 (GRCm39) critical splice donor site probably null
R8080:Fam13a UTSW 6 58,933,790 (GRCm39) missense probably damaging 1.00
R9494:Fam13a UTSW 6 58,930,508 (GRCm39) missense probably benign 0.00
R9671:Fam13a UTSW 6 58,951,014 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- ATATAGGAGTGTCTGAATGCCCG -3'
(R):5'- CCCGTTGTGCTTAGTAACTTTG -3'

Sequencing Primer
(F):5'- GTCTGAATGCCCGCTAAGTTAAG -3'
(R):5'- CCGTTGTGCTTAGTAACTTTGATTGC -3'
Posted On 2018-06-22