|Institutional Source||Beutler Lab|
|Gene Name||cadherin, EGF LAG seven-pass G-type receptor 1|
|Synonyms||crash, Crsh, Scy|
|Is this an essential gene?||Probably essential (E-score: 0.840)|
|Stock #||R6607 (G1)|
|Chromosomal Location||85898929-86033777 bp(-) (GRCm38)|
|Type of Mutation||missense|
|DNA Base Change (assembly)||A to G at 85963285 bp|
|Amino Acid Change||Valine to Alanine at position 1417 (V1417A)|
|Ref Sequence||ENSEMBL: ENSMUSP00000016172 (fasta)|
|Gene Model||predicted gene model for transcript(s): [ENSMUST00000016172]|
|Predicted Effect||probably benign
AA Change: V1417A
PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
AA Change: V1417A
AA Change: V50A
|Meta Mutation Damage Score||0.0592|
|Coding Region Coverage||
|Validation Efficiency||96% (27/28)|
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the flamingo subfamily, part of the cadherin superfamily. The flamingo subfamily consists of nonclassic-type cadherins; a subpopulation that does not interact with catenins. The flamingo cadherins are located at the plasma membrane and have nine cadherin domains, seven epidermal growth factor-like repeats and two laminin A G-type repeats in their ectodomain. They also have seven transmembrane domains, a characteristic unique to this subfamily. It is postulated that these proteins are receptors involved in contact-mediated communication, with cadherin domains acting as homophilic binding regions and the EGF-like domains involved in cell adhesion and receptor-ligand interactions. This particular member is a developmentally regulated, neural-specific gene which plays an unspecified role in early embryogenesis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Nullizygous mice exhibit kinky tails, variable neural tube defects, abnormal hair follicle orientation, whorl-like hair patterns, and partial prenatal lethality. ENU-induced mutants show defects in planar polarity of inner ear hair cells and complete perinatal lethality due to craniorachischisis. [provided by MGI curators]
|Allele List at MGI|
|Other mutations in this stock||
|Other mutations in Celsr1||
(F):5'- AAACACGGCTGCACTTACG -3'
(R):5'- GTCAACTGTGTGACTCAGGG -3'
(F):5'- TGCACTTACGCCAGGGAGAC -3'
(R):5'- AGGAACCATCTCTGTTAGACTGGC -3'