Incidental Mutation 'R6646:Ada'
ID |
527968 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Ada
|
Ensembl Gene |
ENSMUSG00000017697 |
Gene Name |
adenosine deaminase |
Synonyms |
|
MMRRC Submission |
044767-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R6646 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
2 |
Chromosomal Location |
163568504-163592159 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to T
at 163577343 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Asparagine to Lysine
at position 48
(N48K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000017841
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000017841]
|
AlphaFold |
P03958 |
PDB Structure |
ADA STRUCTURE COMPLEXED WITH DEOXYCOFORMYCIN AT PH 7.0 [X-RAY DIFFRACTION]
ADA STRUCTURE COMPLEXED WITH PURINE RIBOSIDE AT PH 7.0 [X-RAY DIFFRACTION]
A PRE-TRANSITION STATE MIMIC OF AN ENZYME: X-RAY STRUCTURE OF ADENOSINE DEAMINASE WITH BOUND 1-DEAZA-ADENOSINE AND ZINC-ACTIVATED WATER [X-RAY DIFFRACTION]
MURINE ADENOSINE DEAMINASE (D295E) [X-RAY DIFFRACTION]
MURINE ADENOSINE DEAMINASE (D296A) [X-RAY DIFFRACTION]
ADENOSINE DEAMINASE (HIS 238 ALA MUTANT) [X-RAY DIFFRACTION]
ADENOSINE DEAMINASE (HIS 238 GLU MUTANT) [X-RAY DIFFRACTION]
ATOMIC STRUCTURE OF ADENOSINE DEAMINASE COMPLEXED WITH A TRANSITION-STATE ANALOG: UNDERSTANDING CATALYSIS AND IMMUNODEFICIENCY MUTATIONS [X-RAY DIFFRACTION]
Crystal structuore of adenosine deaminase from mus musculus complexed with 9-deazainosine [X-RAY DIFFRACTION]
Crystal structure of holo mADA at 1.6 A resolution [X-RAY DIFFRACTION]
>> 2 additional structures at PDB <<
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000017841
AA Change: N48K
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000017841 Gene: ENSMUSG00000017697 AA Change: N48K
Domain | Start | End | E-Value | Type |
Pfam:A_deaminase
|
8 |
346 |
1.3e-111 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156939
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.6%
- 20x: 92.4%
|
Validation Efficiency |
100% (41/41) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that catalyzes the hydrolysis of adenosine to inosine. Various mutations have been described for this gene and have been linked to human diseases. Deficiency in this enzyme causes a form of severe combined immunodeficiency disease (SCID), in which there is dysfunction of both B and T lymphocytes with impaired cellular immunity and decreased production of immunoglobulins, whereas elevated levels of this enzyme have been associated with congenital hemolytic anemia. [provided by RefSeq, Jul 2008] PHENOTYPE: Mice homozygous for targeted mutations that inactivate the gene die perinatally with defective purine metabolism and severe liver cell degeneration, but lack thymic abnormalities. Replacement of placental ADA can rescue ADA-deficient fetuses, resulting in mice that are T and B-cell deficient, have elevated dATP levels, and immune deficiencies resembling human ADA deficiency. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aldh1a7 |
C |
T |
19: 20,677,275 (GRCm39) |
A449T |
possibly damaging |
Het |
Arhgef28 |
A |
G |
13: 98,076,002 (GRCm39) |
V1344A |
probably benign |
Het |
Carmil3 |
A |
T |
14: 55,745,387 (GRCm39) |
E1371D |
probably damaging |
Het |
Crebbp |
C |
T |
16: 3,937,670 (GRCm39) |
A698T |
possibly damaging |
Het |
Dedd2 |
T |
C |
7: 24,903,038 (GRCm39) |
D307G |
probably damaging |
Het |
Dennd6b |
G |
T |
15: 89,070,387 (GRCm39) |
F427L |
probably damaging |
Het |
Dnase1l1 |
C |
T |
X: 73,320,644 (GRCm39) |
|
probably null |
Homo |
Doc2a |
G |
A |
7: 126,450,791 (GRCm39) |
|
probably null |
Het |
Dst |
A |
G |
1: 34,307,888 (GRCm39) |
T6503A |
possibly damaging |
Het |
Ehmt1 |
A |
T |
2: 24,696,322 (GRCm39) |
I922K |
probably damaging |
Het |
Gbp9 |
A |
G |
5: 105,230,769 (GRCm39) |
I385T |
probably benign |
Het |
Gipc2 |
A |
T |
3: 151,799,838 (GRCm39) |
D297E |
possibly damaging |
Het |
Krt6b |
T |
A |
15: 101,585,649 (GRCm39) |
Q428L |
probably damaging |
Het |
Loxl4 |
T |
C |
19: 42,587,220 (GRCm39) |
D625G |
probably damaging |
Het |
Lrrn2 |
C |
T |
1: 132,866,794 (GRCm39) |
P620S |
probably benign |
Het |
Msh6 |
T |
C |
17: 88,293,870 (GRCm39) |
V875A |
possibly damaging |
Het |
Nebl |
T |
C |
2: 17,381,496 (GRCm39) |
T727A |
probably damaging |
Het |
Obscn |
T |
C |
11: 58,973,544 (GRCm39) |
D1929G |
possibly damaging |
Het |
Pard3b |
T |
C |
1: 62,200,280 (GRCm39) |
V273A |
probably benign |
Het |
Pcdhb7 |
T |
A |
18: 37,477,027 (GRCm39) |
V721E |
possibly damaging |
Het |
Plaa |
A |
T |
4: 94,478,215 (GRCm39) |
H82Q |
probably benign |
Het |
Plcd1 |
T |
A |
9: 118,904,100 (GRCm39) |
Y278F |
probably damaging |
Het |
Plxnb1 |
C |
A |
9: 108,937,895 (GRCm39) |
H1214N |
probably benign |
Het |
Ptprg |
C |
A |
14: 11,962,714 (GRCm38) |
P171T |
probably damaging |
Het |
Rela |
T |
G |
19: 5,697,132 (GRCm39) |
D446E |
probably damaging |
Het |
Rpap1 |
T |
C |
2: 119,610,612 (GRCm39) |
I156V |
probably benign |
Het |
Rpl15 |
T |
C |
14: 18,270,040 (GRCm38) |
Y59C |
probably damaging |
Het |
Scx |
C |
A |
15: 76,342,121 (GRCm39) |
T107N |
probably damaging |
Het |
Skint5 |
T |
A |
4: 113,797,974 (GRCm39) |
K203I |
possibly damaging |
Het |
Slc16a6 |
C |
T |
11: 109,343,988 (GRCm39) |
M518I |
probably benign |
Het |
Sorbs1 |
C |
T |
19: 40,313,993 (GRCm39) |
G940R |
probably damaging |
Het |
Spata31h1 |
T |
A |
10: 82,132,664 (GRCm39) |
E115D |
unknown |
Het |
Synm |
A |
T |
7: 67,384,875 (GRCm39) |
I487K |
probably damaging |
Het |
Tcerg1l |
A |
T |
7: 137,996,912 (GRCm39) |
|
probably null |
Het |
Vmn2r99 |
T |
G |
17: 19,600,293 (GRCm39) |
L439R |
probably damaging |
Het |
Wdr75 |
T |
A |
1: 45,838,247 (GRCm39) |
L52Q |
probably damaging |
Het |
Zswim2 |
T |
A |
2: 83,746,128 (GRCm39) |
R437* |
probably null |
Het |
|
Other mutations in Ada |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01686:Ada
|
APN |
2 |
163,572,236 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02414:Ada
|
APN |
2 |
163,571,960 (GRCm39) |
missense |
probably benign |
|
IGL02973:Ada
|
APN |
2 |
163,573,053 (GRCm39) |
missense |
probably benign |
0.01 |
R0053:Ada
|
UTSW |
2 |
163,574,212 (GRCm39) |
missense |
probably damaging |
0.99 |
R0076:Ada
|
UTSW |
2 |
163,569,523 (GRCm39) |
unclassified |
probably benign |
|
R0305:Ada
|
UTSW |
2 |
163,570,077 (GRCm39) |
missense |
probably benign |
0.00 |
R0463:Ada
|
UTSW |
2 |
163,572,271 (GRCm39) |
missense |
probably benign |
0.00 |
R0464:Ada
|
UTSW |
2 |
163,574,884 (GRCm39) |
nonsense |
probably null |
|
R0701:Ada
|
UTSW |
2 |
163,571,995 (GRCm39) |
missense |
probably benign |
0.30 |
R1474:Ada
|
UTSW |
2 |
163,574,814 (GRCm39) |
missense |
possibly damaging |
0.94 |
R4044:Ada
|
UTSW |
2 |
163,577,380 (GRCm39) |
missense |
probably damaging |
0.96 |
R4589:Ada
|
UTSW |
2 |
163,574,868 (GRCm39) |
missense |
possibly damaging |
0.94 |
R5114:Ada
|
UTSW |
2 |
163,572,406 (GRCm39) |
missense |
probably benign |
0.15 |
R5424:Ada
|
UTSW |
2 |
163,570,045 (GRCm39) |
nonsense |
probably null |
|
R5753:Ada
|
UTSW |
2 |
163,577,318 (GRCm39) |
missense |
probably benign |
0.00 |
R6392:Ada
|
UTSW |
2 |
163,570,137 (GRCm39) |
missense |
probably damaging |
1.00 |
R6501:Ada
|
UTSW |
2 |
163,570,108 (GRCm39) |
splice site |
probably null |
|
R7651:Ada
|
UTSW |
2 |
163,574,275 (GRCm39) |
missense |
probably damaging |
0.98 |
R7669:Ada
|
UTSW |
2 |
163,570,111 (GRCm39) |
nonsense |
probably null |
|
R7803:Ada
|
UTSW |
2 |
163,577,288 (GRCm39) |
missense |
probably benign |
0.00 |
R9093:Ada
|
UTSW |
2 |
163,577,308 (GRCm39) |
missense |
probably benign |
|
R9469:Ada
|
UTSW |
2 |
163,574,192 (GRCm39) |
missense |
probably benign |
0.03 |
R9655:Ada
|
UTSW |
2 |
163,574,270 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Ada
|
UTSW |
2 |
163,570,036 (GRCm39) |
critical splice donor site |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- GTGCAGAGTGCCTTGTACAG -3'
(R):5'- GGCTTCCAGTCTGTTCCATG -3'
Sequencing Primer
(F):5'- AGTGCCTTGTACAGCAGCAG -3'
(R):5'- CATTGGATCCCCTGGAATTAGAG -3'
|
Posted On |
2018-07-24 |