Incidental Mutation 'R6697:Neu4'
| ID |
528612 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Neu4
|
| Ensembl Gene |
ENSMUSG00000034000 |
| Gene Name |
sialidase 4 |
| Synonyms |
|
| MMRRC Submission |
044815-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6697 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
1 |
| Chromosomal Location |
93948215-93956056 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 93952752 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Lysine to Glutamic Acid
at position 374
(K374E)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000140127
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000050890]
[ENSMUST00000190212]
|
| AlphaFold |
Q8BZL1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000050890
AA Change: K351E
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000051151
Gene: ENSMUSG00000034000
AA Change: K351E
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:BNR_3
|
24 |
256 |
5.8e-10 |
PFAM |
|
Pfam:BNR_2
|
34 |
270 |
2e-29 |
PFAM |
|
SCOP:d3sil__
|
371 |
448 |
4e-12 |
SMART |
|
PDB:2F13|A
|
371 |
455 |
8e-12 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190212
AA Change: K374E
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000140127
Gene: ENSMUSG00000034000
AA Change: K374E
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:BNR_3
|
47 |
279 |
1.6e-6 |
PFAM |
|
Pfam:BNR_2
|
58 |
304 |
4.6e-25 |
PFAM |
|
SCOP:d3sil__
|
394 |
471 |
4e-12 |
SMART |
|
PDB:2F29|B
|
394 |
478 |
1e-11 |
PDB |
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.7%
- 10x: 98.4%
- 20x: 95.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to a family of glycohydrolytic enzymes, which remove terminal sialic acid residues from various sialo derivatives, such as glycoproteins, glycolipids, oligosaccharides, and gangliosides. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Nov 2009]
PHENOTYPE: Mice homozygous for a null allele are largely normal except increased lipid content in the lung and liver and vacuolization indicative of lysosomal storage disorder. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 23 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgb |
G |
T |
10: 10,281,870 (GRCm39) |
S562* |
probably null |
Het |
| Arhgap9 |
T |
C |
10: 127,157,989 (GRCm39) |
F2S |
probably benign |
Het |
| C2cd6 |
ATGTGGCCTGTCTTCT |
A |
1: 59,090,247 (GRCm39) |
|
probably benign |
Het |
| Clk1 |
A |
G |
1: 58,453,781 (GRCm39) |
S298P |
probably benign |
Het |
| Col7a1 |
T |
A |
9: 108,799,601 (GRCm39) |
L1834Q |
probably damaging |
Het |
| Dip2c |
T |
C |
13: 9,671,949 (GRCm39) |
L1007P |
probably damaging |
Het |
| Erich3 |
G |
T |
3: 154,469,907 (GRCm39) |
|
probably benign |
Het |
| Fam209 |
A |
G |
2: 172,316,123 (GRCm39) |
E166G |
probably damaging |
Het |
| Fbxl4 |
A |
G |
4: 22,376,599 (GRCm39) |
T12A |
probably benign |
Het |
| Grid2 |
C |
G |
6: 63,908,031 (GRCm39) |
R224G |
possibly damaging |
Het |
| Grin2a |
T |
C |
16: 9,487,704 (GRCm39) |
D398G |
possibly damaging |
Het |
| Hmx2 |
T |
C |
7: 131,157,663 (GRCm39) |
L259P |
probably damaging |
Het |
| Macc1 |
A |
T |
12: 119,410,991 (GRCm39) |
R586S |
possibly damaging |
Het |
| Map3k14 |
T |
C |
11: 103,117,890 (GRCm39) |
E634G |
probably benign |
Het |
| Mettl21e |
G |
T |
1: 44,249,327 (GRCm39) |
L110I |
probably damaging |
Het |
| Mgst1 |
A |
G |
6: 138,124,751 (GRCm39) |
I22V |
probably damaging |
Het |
| Muc16 |
T |
C |
9: 18,552,587 (GRCm39) |
T4569A |
probably benign |
Het |
| Nufip1 |
A |
G |
14: 76,370,513 (GRCm39) |
T405A |
probably benign |
Het |
| Rilpl2 |
C |
T |
5: 124,607,843 (GRCm39) |
E126K |
probably damaging |
Het |
| Rsf1 |
ATGGCG |
ATGGCGACGGTGGCG |
7: 97,229,111 (GRCm39) |
|
probably benign |
Homo |
| Tial1 |
G |
T |
7: 128,046,593 (GRCm39) |
Q68K |
possibly damaging |
Het |
| Znrd2 |
A |
G |
19: 5,780,458 (GRCm39) |
L180P |
probably damaging |
Het |
| Zp1 |
T |
A |
19: 10,892,199 (GRCm39) |
I62L |
probably benign |
Het |
|
| Other mutations in Neu4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02367:Neu4
|
APN |
1 |
93,952,213 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03348:Neu4
|
APN |
1 |
93,952,696 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R0018:Neu4
|
UTSW |
1 |
93,953,060 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0018:Neu4
|
UTSW |
1 |
93,953,060 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0645:Neu4
|
UTSW |
1 |
93,950,191 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0813:Neu4
|
UTSW |
1 |
93,950,598 (GRCm39) |
frame shift |
probably null |
|
|
R0814:Neu4
|
UTSW |
1 |
93,950,598 (GRCm39) |
frame shift |
probably null |
|
|
R2056:Neu4
|
UTSW |
1 |
93,950,172 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R4354:Neu4
|
UTSW |
1 |
93,952,279 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4922:Neu4
|
UTSW |
1 |
93,950,200 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5156:Neu4
|
UTSW |
1 |
93,952,177 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5268:Neu4
|
UTSW |
1 |
93,952,669 (GRCm39) |
missense |
probably benign |
0.18 |
|
R5447:Neu4
|
UTSW |
1 |
93,950,140 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5862:Neu4
|
UTSW |
1 |
93,950,652 (GRCm39) |
missense |
probably benign |
0.20 |
|
R6280:Neu4
|
UTSW |
1 |
93,952,873 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7192:Neu4
|
UTSW |
1 |
93,952,863 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7533:Neu4
|
UTSW |
1 |
93,950,122 (GRCm39) |
missense |
probably benign |
0.38 |
|
R9395:Neu4
|
UTSW |
1 |
93,950,218 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Neu4
|
UTSW |
1 |
93,952,972 (GRCm39) |
missense |
probably benign |
0.08 |
|
| Predicted Primers |
PCR Primer
(F):5'- CTCAATCGAGCCTCAGGATGAC -3'
(R):5'- AAGGTCAGAGTAGCCACTGG -3'
Sequencing Primer
(F):5'- TCAGGATGACCGGTGGAC -3'
(R):5'- ACTGGGGCCCTCATAGATCAC -3'
|
| Posted On |
2018-07-24 |
Incidental Mutation