Incidental Mutation 'R6785:Gen1'
| ID |
531640 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Gen1
|
| Ensembl Gene |
ENSMUSG00000051235 |
| Gene Name |
GEN1, Holliday junction 5' flap endonuclease |
| Synonyms |
5830483C08Rik |
| MMRRC Submission |
044899-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.152)
|
| Stock # |
R6785 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
12 |
| Chromosomal Location |
11288921-11315802 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 11312531 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 13
(V13A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000132098
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000020931]
[ENSMUST00000166117]
[ENSMUST00000217906]
[ENSMUST00000218022]
[ENSMUST00000218259]
[ENSMUST00000218487]
[ENSMUST00000218547]
[ENSMUST00000218866]
[ENSMUST00000219600]
[ENSMUST00000219776]
|
| AlphaFold |
Q8BMI4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000020931
|
| SMART Domains |
Protein: ENSMUSP00000020931
Gene: ENSMUSG00000020608
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SMC_N
|
53 |
1077 |
4.7e-17 |
PFAM |
|
Pfam:AAA_15
|
54 |
438 |
3.1e-9 |
PFAM |
|
Pfam:AAA_23
|
56 |
398 |
5e-12 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000166117
AA Change: V13A
PolyPhen 2
Score 0.886 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000132098
Gene: ENSMUSG00000051235
AA Change: V13A
| Domain | Start | End | E-Value | Type |
|---|
|
XPGN
|
1 |
96 |
9.13e-22 |
SMART |
|
XPGI
|
122 |
193 |
5.32e-23 |
SMART |
|
HhH2
|
195 |
229 |
2.87e-5 |
SMART |
|
low complexity region
|
704 |
713 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000217906
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218022
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218259
AA Change: V13A
PolyPhen 2
Score 0.337 (Sensitivity: 0.90; Specificity: 0.89)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218487
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218547
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000218866
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000219600
AA Change: V13A
PolyPhen 2
Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000219776
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.7%
- 10x: 98.6%
- 20x: 96.3%
|
| Validation Efficiency |
98% (59/60) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Rad2/xeroderma pigmentosum group G nuclease family, whose members are characterized by N-terminal and internal xeroderma pigmentosum group G nuclease domains followed by helix-hairpin-helix domains and disordered C-terminal domains. The protein encoded by this gene is involved in resolution of Holliday junctions, which are intermediate four-way structures that covalently link DNA during homologous recombination and double-strand break repair. The protein resolves Holliday junctions by creating dual incisions across the junction to produce nicked duplex products that can be ligated. In addition, this protein has been found to localize to centrosomes where it has been implicated in regulation of centrosome integrity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 61 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abi1 |
A |
G |
2: 22,843,479 (GRCm39) |
V316A |
probably benign |
Het |
| Acad12 |
T |
C |
5: 121,747,908 (GRCm39) |
Y170C |
probably damaging |
Het |
| Acss2 |
T |
C |
2: 155,402,605 (GRCm39) |
V587A |
probably damaging |
Het |
| Adamtsl3 |
A |
G |
7: 82,171,212 (GRCm39) |
I422V |
probably damaging |
Het |
| Aldh18a1 |
A |
G |
19: 40,556,788 (GRCm39) |
L375P |
probably damaging |
Het |
| B020011L13Rik |
A |
G |
1: 117,728,799 (GRCm39) |
D102G |
possibly damaging |
Het |
| Cfap74 |
T |
A |
4: 155,538,481 (GRCm39) |
|
probably benign |
Het |
| Coa4 |
G |
A |
7: 100,188,460 (GRCm39) |
V58M |
probably damaging |
Het |
| Crybg1 |
T |
C |
10: 43,875,167 (GRCm39) |
N647S |
probably benign |
Het |
| Dync1h1 |
G |
A |
12: 110,596,113 (GRCm39) |
G1547S |
probably damaging |
Het |
| Espnl |
A |
G |
1: 91,249,943 (GRCm39) |
D30G |
probably benign |
Het |
| Fasl |
T |
A |
1: 161,609,404 (GRCm39) |
Y194F |
probably benign |
Het |
| Fbxw8 |
T |
C |
5: 118,230,754 (GRCm39) |
E349G |
probably damaging |
Het |
| Gm4559 |
A |
G |
7: 141,827,845 (GRCm39) |
C86R |
unknown |
Het |
| H2-M9 |
T |
C |
17: 36,953,125 (GRCm39) |
N61D |
probably damaging |
Het |
| H6pd |
C |
T |
4: 150,067,247 (GRCm39) |
E380K |
possibly damaging |
Het |
| Herc1 |
TCCC |
TCC |
9: 66,408,470 (GRCm39) |
|
probably null |
Het |
| Hnrnpd |
C |
A |
5: 100,126,283 (GRCm39) |
K67N |
probably benign |
Het |
| Hspg2 |
T |
C |
4: 137,235,709 (GRCm39) |
S170P |
probably damaging |
Het |
| Igsf10 |
G |
T |
3: 59,226,665 (GRCm39) |
P2336Q |
probably damaging |
Het |
| Itih3 |
C |
T |
14: 30,634,572 (GRCm39) |
|
probably null |
Het |
| Katnb1 |
T |
C |
8: 95,822,270 (GRCm39) |
Y298H |
probably benign |
Het |
| Kif21a |
A |
T |
15: 90,819,933 (GRCm39) |
N1610K |
probably damaging |
Het |
| Lce1l |
A |
T |
3: 92,757,500 (GRCm39) |
C119* |
probably null |
Het |
| Lcn2 |
C |
T |
2: 32,277,039 (GRCm39) |
|
probably null |
Het |
| Lmf2 |
A |
T |
15: 89,236,236 (GRCm39) |
S588T |
probably benign |
Het |
| Mboat7 |
A |
G |
7: 3,688,835 (GRCm39) |
L231P |
probably benign |
Het |
| Mier2 |
T |
C |
10: 79,380,547 (GRCm39) |
R288G |
probably damaging |
Het |
| Mybbp1a |
T |
C |
11: 72,338,392 (GRCm39) |
V694A |
probably benign |
Het |
| Ndnf |
C |
A |
6: 65,680,047 (GRCm39) |
L109I |
probably benign |
Het |
| Nfkb1 |
C |
A |
3: 135,321,064 (GRCm39) |
E230D |
probably benign |
Het |
| Nostrin |
A |
G |
2: 69,014,271 (GRCm39) |
K409R |
probably benign |
Het |
| Or1j10 |
A |
G |
2: 36,266,854 (GRCm39) |
Q22R |
probably benign |
Het |
| Or1j10 |
C |
A |
2: 36,266,963 (GRCm39) |
Y58* |
probably null |
Het |
| Or8k35 |
T |
A |
2: 86,424,765 (GRCm39) |
M136L |
probably damaging |
Het |
| Pdpr |
C |
A |
8: 111,851,243 (GRCm39) |
T534N |
probably benign |
Het |
| Plekhf1 |
G |
A |
7: 37,921,488 (GRCm39) |
Q27* |
probably null |
Het |
| Ppp6c |
A |
T |
2: 39,087,593 (GRCm39) |
H204Q |
probably benign |
Het |
| Prrc2c |
T |
C |
1: 162,536,670 (GRCm39) |
|
probably benign |
Het |
| Prrg2 |
A |
G |
7: 44,709,649 (GRCm39) |
F83L |
probably damaging |
Het |
| Rab11fip3 |
T |
G |
17: 26,210,692 (GRCm39) |
D938A |
probably damaging |
Het |
| Rai1 |
A |
G |
11: 60,079,620 (GRCm39) |
N1228S |
probably benign |
Het |
| Ryr1 |
G |
T |
7: 28,764,299 (GRCm39) |
T3060K |
probably benign |
Het |
| Scube2 |
A |
G |
7: 109,409,824 (GRCm39) |
I557T |
probably benign |
Het |
| Setdb1 |
C |
A |
3: 95,233,712 (GRCm39) |
R1066L |
probably benign |
Het |
| Shoc1 |
T |
C |
4: 59,049,066 (GRCm39) |
M1100V |
probably benign |
Het |
| Slc35f3 |
T |
C |
8: 127,121,198 (GRCm39) |
V353A |
probably benign |
Het |
| Slfn3 |
A |
T |
11: 83,105,427 (GRCm39) |
T475S |
possibly damaging |
Het |
| Snrnp200 |
T |
A |
2: 127,071,085 (GRCm39) |
M1122K |
possibly damaging |
Het |
| Tead4 |
T |
A |
6: 128,219,444 (GRCm39) |
K223* |
probably null |
Het |
| Tex2 |
A |
C |
11: 106,424,776 (GRCm39) |
I334R |
probably damaging |
Het |
| Tfdp1 |
C |
T |
8: 13,420,485 (GRCm39) |
R105W |
probably damaging |
Het |
| Tfdp1 |
G |
T |
8: 13,427,233 (GRCm39) |
V393F |
possibly damaging |
Het |
| Thsd7b |
T |
C |
1: 129,358,644 (GRCm39) |
L26P |
probably damaging |
Het |
| Trim80 |
T |
C |
11: 115,332,027 (GRCm39) |
I73T |
probably damaging |
Het |
| Tssk4 |
T |
A |
14: 55,887,932 (GRCm39) |
Y43N |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,541,839 (GRCm39) |
T25389A |
probably damaging |
Het |
| Ttn |
A |
T |
2: 76,578,288 (GRCm39) |
F24202I |
probably damaging |
Het |
| Vmn1r177 |
A |
G |
7: 23,565,562 (GRCm39) |
S105P |
probably damaging |
Het |
| Vmn2r40 |
T |
A |
7: 8,911,203 (GRCm39) |
T697S |
probably benign |
Het |
| Zfp267 |
T |
A |
3: 36,219,601 (GRCm39) |
C541* |
probably null |
Het |
|
| Other mutations in Gen1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00730:Gen1
|
APN |
12 |
11,311,068 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01308:Gen1
|
APN |
12 |
11,306,871 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01384:Gen1
|
APN |
12 |
11,305,242 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01766:Gen1
|
APN |
12 |
11,306,895 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02132:Gen1
|
APN |
12 |
11,291,867 (GRCm39) |
missense |
probably benign |
0.37 |
|
IGL02191:Gen1
|
APN |
12 |
11,292,297 (GRCm39) |
missense |
probably benign |
0.18 |
|
IGL02452:Gen1
|
APN |
12 |
11,292,576 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02479:Gen1
|
APN |
12 |
11,291,936 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02690:Gen1
|
APN |
12 |
11,291,576 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL03095:Gen1
|
APN |
12 |
11,298,265 (GRCm39) |
missense |
probably benign |
0.38 |
|
PIT4520001:Gen1
|
UTSW |
12 |
11,291,509 (GRCm39) |
missense |
probably benign |
0.12 |
|
R0014:Gen1
|
UTSW |
12 |
11,291,642 (GRCm39) |
missense |
probably benign |
0.44 |
|
R0014:Gen1
|
UTSW |
12 |
11,291,642 (GRCm39) |
missense |
probably benign |
0.44 |
|
R0355:Gen1
|
UTSW |
12 |
11,298,355 (GRCm39) |
splice site |
probably benign |
|
|
R0680:Gen1
|
UTSW |
12 |
11,291,870 (GRCm39) |
missense |
probably benign |
0.06 |
|
R0891:Gen1
|
UTSW |
12 |
11,298,355 (GRCm39) |
splice site |
probably benign |
|
|
R1192:Gen1
|
UTSW |
12 |
11,305,219 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1353:Gen1
|
UTSW |
12 |
11,293,220 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1833:Gen1
|
UTSW |
12 |
11,298,352 (GRCm39) |
splice site |
probably benign |
|
|
R1898:Gen1
|
UTSW |
12 |
11,291,609 (GRCm39) |
missense |
probably benign |
0.10 |
|
R2138:Gen1
|
UTSW |
12 |
11,291,622 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2185:Gen1
|
UTSW |
12 |
11,311,041 (GRCm39) |
missense |
probably null |
0.95 |
|
R2409:Gen1
|
UTSW |
12 |
11,299,165 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R2876:Gen1
|
UTSW |
12 |
11,292,069 (GRCm39) |
missense |
probably benign |
0.13 |
|
R3815:Gen1
|
UTSW |
12 |
11,302,034 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R4402:Gen1
|
UTSW |
12 |
11,292,363 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R4572:Gen1
|
UTSW |
12 |
11,292,419 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4900:Gen1
|
UTSW |
12 |
11,291,561 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5091:Gen1
|
UTSW |
12 |
11,296,347 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5952:Gen1
|
UTSW |
12 |
11,310,897 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6869:Gen1
|
UTSW |
12 |
11,291,442 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7057:Gen1
|
UTSW |
12 |
11,292,419 (GRCm39) |
missense |
probably benign |
0.21 |
|
R7155:Gen1
|
UTSW |
12 |
11,291,833 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7260:Gen1
|
UTSW |
12 |
11,306,849 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7316:Gen1
|
UTSW |
12 |
11,291,470 (GRCm39) |
missense |
probably benign |
|
|
R7512:Gen1
|
UTSW |
12 |
11,310,977 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R7692:Gen1
|
UTSW |
12 |
11,292,167 (GRCm39) |
missense |
probably benign |
0.22 |
|
R7800:Gen1
|
UTSW |
12 |
11,291,863 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8061:Gen1
|
UTSW |
12 |
11,311,077 (GRCm39) |
splice site |
probably benign |
|
|
R8112:Gen1
|
UTSW |
12 |
11,304,374 (GRCm39) |
nonsense |
probably null |
|
|
R8147:Gen1
|
UTSW |
12 |
11,305,051 (GRCm39) |
splice site |
probably null |
|
|
R8152:Gen1
|
UTSW |
12 |
11,293,266 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8153:Gen1
|
UTSW |
12 |
11,310,948 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8161:Gen1
|
UTSW |
12 |
11,291,465 (GRCm39) |
missense |
probably benign |
0.21 |
|
R8942:Gen1
|
UTSW |
12 |
11,292,287 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9004:Gen1
|
UTSW |
12 |
11,305,022 (GRCm39) |
intron |
probably benign |
|
|
R9183:Gen1
|
UTSW |
12 |
11,299,186 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9347:Gen1
|
UTSW |
12 |
11,311,068 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9367:Gen1
|
UTSW |
12 |
11,291,309 (GRCm39) |
nonsense |
probably null |
|
|
R9482:Gen1
|
UTSW |
12 |
11,305,186 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
| Predicted Primers |
PCR Primer
(F):5'- TCAGGACACCAAGACTTGCC -3'
(R):5'- TCCACTGTGAACTGTATAGCCATAC -3'
Sequencing Primer
(F):5'- TTGCCACACAATGACTCATCTC -3'
(R):5'- TAGTTCTAGGACAGCCAGTGC -3'
|
| Posted On |
2018-08-29 |
Incidental Mutation