Mutagenetix > Incidental Mutation

Incidental Mutation 'R6787:Tbc1d19'

532425

Institutional Source

Beutler Lab

Gene Symbol

Tbc1d19

Ensembl Gene

ENSMUSG00000039178

Gene Name

TBC1 domain family, member 19

Synonyms

2810453K03Rik

MMRRC Submission

044901-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.213) question?

Stock #

R6787 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

53966948-54061307 bp(+) (GRCm39)

Type of Mutation

splice site (3 bp from exon)

DNA Base Change (assembly)

A to G at 53992591 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000040585 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037337] [ENSMUST00000201958] [ENSMUST00000202528] [ENSMUST00000202599]

AlphaFold

Q8VDV7

Predicted Effect

probably null
Transcript: ENSMUST00000037337

SMART Domains

Protein: ENSMUSP00000040585
Gene: ENSMUSG00000039178

Domain	Start	End	E-Value	Type
TBC	248	496	8.07e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000201958

Predicted Effect

probably benign
Transcript: ENSMUST00000202528

Predicted Effect

probably benign
Transcript: ENSMUST00000202599

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.3%

Validation Efficiency

96% (51/53)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700097O09Rik	G	A	12: 55,126,768 (GRCm39)	T32I	probably benign	Het
4930486L24Rik	T	A	13: 61,000,922 (GRCm39)	I205L	probably benign	Het
Aatk	C	T	11: 119,901,508 (GRCm39)	V963M	probably damaging	Het
Adra1b	C	A	11: 43,726,242 (GRCm39)	R225L	probably damaging	Het
Adrb1	T	C	19: 56,711,021 (GRCm39)	V73A	probably damaging	Het
Akt3	A	T	1: 176,877,756 (GRCm39)	Y337*	probably null	Het
BC035947	G	T	1: 78,475,527 (GRCm39)	P335Q	possibly damaging	Het
C2cd3	T	C	7: 100,104,553 (GRCm39)	F2189L	probably benign	Het
Capn9	A	G	8: 125,342,924 (GRCm39)	I635V	probably benign	Het
Cep55	T	A	19: 38,046,374 (GRCm39)	D42E	probably benign	Het
Cftr	T	A	6: 18,274,607 (GRCm39)	Y878*	probably null	Het
Clpb	A	T	7: 101,312,866 (GRCm39)		probably benign	Het
Cpeb3	T	C	19: 37,022,089 (GRCm39)	I569V	possibly damaging	Het
Cpne6	A	T	14: 55,752,701 (GRCm39)	D297V	probably damaging	Het
Ddhd1	T	C	14: 45,894,976 (GRCm39)	T165A	probably benign	Het
Fam98b	T	C	2: 117,093,402 (GRCm39)		probably null	Het
Frem2	T	C	3: 53,561,744 (GRCm39)	N921S	probably benign	Het
Gbf1	T	A	19: 46,260,211 (GRCm39)	V1039E	probably benign	Het
Gmip	A	G	8: 70,266,436 (GRCm39)	E212G	probably damaging	Het
Gpcpd1	C	T	2: 132,379,758 (GRCm39)		probably benign	Het
Gtf2ird1	A	T	5: 134,392,766 (GRCm39)	N796K	probably damaging	Het
Hadhb	T	C	5: 30,360,247 (GRCm39)		probably benign	Het
Itga4	T	A	2: 79,119,609 (GRCm39)	S472T	probably damaging	Het
Kcna4	G	A	2: 107,125,670 (GRCm39)	E135K	possibly damaging	Het
Kmt2c	G	T	5: 25,480,737 (GRCm39)		probably null	Het
Lama1	T	C	17: 68,091,020 (GRCm39)	I1620T	unknown	Het
Lins1	A	G	7: 66,363,902 (GRCm39)	E594G	probably benign	Het
Lrrc38	T	A	4: 143,096,364 (GRCm39)	M225K	probably benign	Het
Mphosph9	A	G	5: 124,399,090 (GRCm39)	I975T	probably damaging	Het
Mrgprh	T	C	17: 13,095,874 (GRCm39)	F38S	probably benign	Het
Myo1h	G	A	5: 114,458,714 (GRCm39)	G150R	probably damaging	Het
Oas2	T	G	5: 120,876,863 (GRCm39)	I391L	possibly damaging	Het
Or4a70	T	A	2: 89,324,378 (GRCm39)	R93*	probably null	Het
Or5p72	T	C	7: 108,021,889 (GRCm39)	I37T	possibly damaging	Het
Or6c3b	T	A	10: 129,527,391 (GRCm39)	D173V	possibly damaging	Het
Or7e178	T	C	9: 20,247,221 (GRCm39)	D14G	probably benign	Het
Pdcd5	T	C	7: 35,342,063 (GRCm39)	T182A	probably damaging	Het
Pdlim7	T	C	13: 55,656,810 (GRCm39)	D48G	probably damaging	Het
Polr3b	A	C	10: 84,464,489 (GRCm39)		probably null	Het
Psmd5	C	T	2: 34,747,649 (GRCm39)		probably null	Het
Rsf1	GGCG	GGCGACGGCCGCG	7: 97,229,113 (GRCm39)		probably benign	Homo
Sdhb	T	C	4: 140,703,501 (GRCm39)	Y208H	probably damaging	Het
Serinc5	G	A	13: 92,842,740 (GRCm39)	V397I	possibly damaging	Het
Sik2	A	T	9: 50,909,834 (GRCm39)	M73K	possibly damaging	Het
Slc41a1	A	G	1: 131,770,487 (GRCm39)		probably null	Het
Slco1a1	T	C	6: 141,882,213 (GRCm39)	I119V	probably benign	Het
Srd5a1	T	C	13: 69,759,418 (GRCm39)		probably benign	Het
Stab2	T	C	10: 86,754,948 (GRCm39)	I1111V	probably benign	Het
Stxbp6	G	T	12: 44,949,779 (GRCm39)		probably null	Het
Tnxb	A	T	17: 34,929,710 (GRCm39)	T2815S	probably benign	Het
Txnip	T	A	3: 96,467,623 (GRCm39)	I363N	probably damaging	Het
Zfp442	A	T	2: 150,251,499 (GRCm39)	N134K	possibly damaging	Het

Other mutations in Tbc1d19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01121:Tbc1d19	APN	5	54,054,404 (GRCm39)	nonsense	probably null
IGL01684:Tbc1d19	APN	5	54,014,221 (GRCm39)	missense	probably benign	0.31
IGL02476:Tbc1d19	APN	5	54,046,755 (GRCm39)	splice site	probably null
IGL02869:Tbc1d19	APN	5	53,992,559 (GRCm39)	missense	probably benign	0.02
IGL03036:Tbc1d19	APN	5	54,054,389 (GRCm39)	missense	probably damaging	1.00
IGL03099:Tbc1d19	APN	5	54,040,997 (GRCm39)	splice site	probably benign
LCD18:Tbc1d19	UTSW	5	53,974,051 (GRCm39)	intron	probably benign
R0194:Tbc1d19	UTSW	5	54,017,498 (GRCm39)	missense	probably damaging	1.00
R1729:Tbc1d19	UTSW	5	53,986,714 (GRCm39)	missense	probably damaging	1.00
R1776:Tbc1d19	UTSW	5	54,046,653 (GRCm39)	splice site	probably null
R1784:Tbc1d19	UTSW	5	53,986,714 (GRCm39)	missense	probably damaging	1.00
R1902:Tbc1d19	UTSW	5	53,986,695 (GRCm39)	missense	probably benign	0.00
R3431:Tbc1d19	UTSW	5	54,005,548 (GRCm39)	unclassified	probably benign
R3432:Tbc1d19	UTSW	5	54,005,548 (GRCm39)	unclassified	probably benign
R4333:Tbc1d19	UTSW	5	54,029,619 (GRCm39)	missense	possibly damaging	0.93
R4335:Tbc1d19	UTSW	5	54,029,619 (GRCm39)	missense	possibly damaging	0.93
R4681:Tbc1d19	UTSW	5	54,029,595 (GRCm39)	missense	probably damaging	1.00
R4812:Tbc1d19	UTSW	5	53,967,148 (GRCm39)	missense	probably damaging	0.99
R5178:Tbc1d19	UTSW	5	54,046,667 (GRCm39)	missense	possibly damaging	0.84
R5214:Tbc1d19	UTSW	5	54,007,183 (GRCm39)	missense	probably benign	0.00
R6265:Tbc1d19	UTSW	5	53,995,266 (GRCm39)	missense	probably benign	0.06
R6372:Tbc1d19	UTSW	5	54,014,252 (GRCm39)	missense	possibly damaging	0.55
R6494:Tbc1d19	UTSW	5	53,986,725 (GRCm39)	missense	probably benign	0.13
R6495:Tbc1d19	UTSW	5	54,046,555 (GRCm39)	splice site	probably null
R6612:Tbc1d19	UTSW	5	53,967,187 (GRCm39)	missense	possibly damaging	0.88
R6965:Tbc1d19	UTSW	5	54,014,266 (GRCm39)	critical splice donor site	probably null
R7275:Tbc1d19	UTSW	5	54,029,618 (GRCm39)	missense	probably damaging	1.00
R7642:Tbc1d19	UTSW	5	54,014,260 (GRCm39)	missense	probably damaging	0.98
R7655:Tbc1d19	UTSW	5	54,054,377 (GRCm39)	missense	probably damaging	1.00
R7656:Tbc1d19	UTSW	5	54,054,377 (GRCm39)	missense	probably damaging	1.00
R8314:Tbc1d19	UTSW	5	54,054,389 (GRCm39)	missense	probably damaging	1.00
R8479:Tbc1d19	UTSW	5	54,041,031 (GRCm39)	missense	possibly damaging	0.83
X0026:Tbc1d19	UTSW	5	53,992,589 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GGCAACCTTCTCAACCAGTTTTG -3'
(R):5'- CAATGACTGAGTAGGCTATAGCATAGG -3'

Sequencing Primer
(F):5'- CCAGTTTTGCTATTTCTGTCAATATC -3'
(R):5'- GGCTATAGCATAGGTTTATTACAGC -3'

Posted On

2018-08-29