Mutagenetix > Incidental Mutation

Incidental Mutation 'R6744:Prodh'

532806

Institutional Source

Beutler Lab

Gene Symbol

Prodh

Ensembl Gene

ENSMUSG00000003526

Gene Name

proline dehydrogenase

Synonyms

Pro-1, Ym24d07, Pro1

MMRRC Submission

044861-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6744 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

17889590-17907148 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 17897064 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 23 (V23A)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003620] [ENSMUST00000136776] [ENSMUST00000139861] [ENSMUST00000232554]

AlphaFold

Q9WU79

Predicted Effect

probably benign
Transcript: ENSMUST00000003620
AA Change: V332A

PolyPhen 2 Score 0.124 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000003620
Gene: ENSMUSG00000003526
AA Change: V332A

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	23	35	N/A	INTRINSIC
low complexity region	41	52	N/A	INTRINSIC
Pfam:Pro_dh	119	578	7.7e-87	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000126087
AA Change: V33A

PolyPhen 2 Score 0.222 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000121736
Gene: ENSMUSG00000003526
AA Change: V33A

Domain	Start	End	E-Value	Type
Pfam:Pro_dh	25	244	2.9e-76	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000136776
AA Change: V230A

PolyPhen 2 Score 0.087 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000117597
Gene: ENSMUSG00000003526
AA Change: V230A

Domain	Start	End	E-Value	Type
low complexity region	118	129	N/A	INTRINSIC
Pfam:Pro_dh	159	479	1.8e-108	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139861

SMART Domains

Protein: ENSMUSP00000123223
Gene: ENSMUSG00000003526

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	23	35	N/A	INTRINSIC
low complexity region	41	52	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000141635
AA Change: V23A

PolyPhen 2 Score 0.426 (Sensitivity: 0.89; Specificity: 0.90)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000232554
AA Change: V8A

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.6%

Validation Efficiency

98% (47/48)

MGI Phenotype

PHENOTYPE: Homozygotes for a spontaneous null mutation exhibit a slight reduction in male body weight, hyperprolinemia, increased startle reflex, and regionally altered brain levels of proline, glutamate, gamma-aminobutyric acid, and aspartate. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahi1	T	A	10: 20,841,466 (GRCm39)	L251H	probably damaging	Het
Alk	A	T	17: 72,910,077 (GRCm39)	S210T	probably benign	Het
Arap2	A	G	5: 62,906,281 (GRCm39)	F246S	probably damaging	Het
Atad5	T	A	11: 80,024,858 (GRCm39)	N1749K	probably benign	Het
C87436	T	A	6: 86,423,046 (GRCm39)	S207T	probably damaging	Het
C8b	C	T	4: 104,631,543 (GRCm39)	R53W	probably damaging	Het
Catsperg2	A	G	7: 29,409,244 (GRCm39)	V619A	probably benign	Het
Cdc73	G	A	1: 143,577,887 (GRCm39)		probably benign	Het
Cdh4	C	A	2: 179,489,180 (GRCm39)	H297Q	possibly damaging	Het
Col3a1	G	T	1: 45,377,782 (GRCm39)		probably benign	Het
Crybg2	A	G	4: 133,816,207 (GRCm39)	N1328S	probably damaging	Het
Ctnnb1	T	A	9: 120,782,025 (GRCm39)	V346E	probably damaging	Het
Ctns	C	T	11: 73,076,111 (GRCm39)	G308E	probably damaging	Het
Cxxc4	AGGCGGCGGCGGCGGCGGCGGCGGC	AGGCGGCGGCGGCGGCGGCGGCGGCGGC	3: 133,945,891 (GRCm39)		probably benign	Het
Dnah6	A	G	6: 73,014,532 (GRCm39)	I3685T	probably damaging	Het
Dock6	T	C	9: 21,742,770 (GRCm39)	H775R	probably damaging	Het
Eef1ece2	A	T	16: 20,449,116 (GRCm39)	K165N	probably damaging	Het
Fbxl3	A	T	14: 103,320,730 (GRCm39)	V239D	probably damaging	Het
Gh	T	A	11: 106,192,230 (GRCm39)	K55*	probably null	Het
Havcr2	T	G	11: 46,345,887 (GRCm39)		probably null	Het
Kcnq2	T	A	2: 180,727,099 (GRCm39)	H576L	possibly damaging	Het
Kifap3	A	G	1: 163,676,239 (GRCm39)	N398S	probably benign	Het
Lama5	G	A	2: 179,833,455 (GRCm39)	P1519L	probably damaging	Het
Mblac1	A	G	5: 138,192,682 (GRCm39)	E8G	possibly damaging	Het
Mtor	C	T	4: 148,543,112 (GRCm39)	T290I	probably benign	Het
Nceh1	T	C	3: 27,295,938 (GRCm39)	Y400H	probably damaging	Het
Nek9	A	G	12: 85,376,703 (GRCm39)	V226A	probably benign	Het
Or10a3	T	C	7: 108,480,037 (GRCm39)	T259A	probably damaging	Het
Or10al3	T	A	17: 38,012,336 (GRCm39)	Y258*	probably null	Het
Or2d4	A	G	7: 106,543,741 (GRCm39)	S156P	probably damaging	Het
Otud4	C	A	8: 80,400,407 (GRCm39)	Y1039*	probably null	Het
Pax4	T	C	6: 28,442,396 (GRCm39)	H331R	probably benign	Het
Piezo2	A	T	18: 63,165,960 (GRCm39)	Y2090*	probably null	Het
Ppp1r12a	T	A	10: 108,066,395 (GRCm39)	H195Q	probably damaging	Het
Ppp6r2	A	G	15: 89,140,864 (GRCm39)		probably null	Het
Psg20	G	A	7: 18,408,505 (GRCm39)	T405I	probably damaging	Het
Ptprf	T	C	4: 118,093,562 (GRCm39)	D360G	probably benign	Het
Qrfprl	T	A	6: 65,418,324 (GRCm39)	M164K	possibly damaging	Het
Rad18	A	T	6: 112,652,745 (GRCm39)	M284K	probably damaging	Het
Rgs17	T	C	10: 5,792,567 (GRCm39)	K60E	possibly damaging	Het
Sec31a	G	T	5: 100,540,358 (GRCm39)	Q39K	possibly damaging	Het
Slc22a22	G	T	15: 57,117,668 (GRCm39)	T291K	possibly damaging	Het
Sult2a6	C	T	7: 13,956,470 (GRCm39)	E264K	probably damaging	Het
Syne2	C	T	12: 76,121,221 (GRCm39)	R5896C	probably damaging	Het
Tctn1	A	T	5: 122,402,209 (GRCm39)	V75D	probably damaging	Het
Tmem214	A	G	5: 31,031,372 (GRCm39)	K409E	probably damaging	Het
Vcan	T	C	13: 89,853,301 (GRCm39)	Y553C	probably damaging	Het
Vmn1r49	C	T	6: 90,049,184 (GRCm39)	V273I	probably benign	Het

Other mutations in Prodh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01085:Prodh	APN	16	17,894,208 (GRCm39)	missense	probably damaging	0.99
IGL02063:Prodh	APN	16	17,897,049 (GRCm39)	critical splice donor site	probably null
IGL02525:Prodh	APN	16	17,890,332 (GRCm39)	nonsense	probably null
R0147:Prodh	UTSW	16	17,895,677 (GRCm39)	missense	probably damaging	1.00
R0148:Prodh	UTSW	16	17,895,677 (GRCm39)	missense	probably damaging	1.00
R1643:Prodh	UTSW	16	17,898,933 (GRCm39)	missense	probably benign	0.23
R1913:Prodh	UTSW	16	17,898,891 (GRCm39)	missense	probably damaging	1.00
R4190:Prodh	UTSW	16	17,891,504 (GRCm39)	missense	probably benign	0.27
R4191:Prodh	UTSW	16	17,891,504 (GRCm39)	missense	probably benign	0.27
R4193:Prodh	UTSW	16	17,891,504 (GRCm39)	missense	probably benign	0.27
R4204:Prodh	UTSW	16	17,890,182 (GRCm39)	missense	probably damaging	1.00
R5074:Prodh	UTSW	16	17,895,653 (GRCm39)	critical splice donor site	probably null
R6194:Prodh	UTSW	16	17,890,381 (GRCm39)	missense	probably benign	0.16
R6274:Prodh	UTSW	16	17,898,922 (GRCm39)	missense	possibly damaging	0.91
R6376:Prodh	UTSW	16	17,897,849 (GRCm39)	missense	probably benign
R8985:Prodh	UTSW	16	17,890,362 (GRCm39)	missense	probably null	0.00
R9335:Prodh	UTSW	16	17,894,160 (GRCm39)	missense	probably damaging	1.00
R9361:Prodh	UTSW	16	17,898,834 (GRCm39)	missense	probably benign	0.44
R9568:Prodh	UTSW	16	17,902,619 (GRCm39)	intron	probably benign
R9789:Prodh	UTSW	16	17,898,049 (GRCm39)	missense	probably damaging	1.00
Z1177:Prodh	UTSW	16	17,906,891 (GRCm39)	missense	probably benign	0.34

Predicted Primers

PCR Primer
(F):5'- ACACAAGACTAGGTGGGCTG -3'
(R):5'- GGCTGAGTTTGGGAACAGTC -3'

Sequencing Primer
(F):5'- CTAGGTGGGCTGGGAAGACC -3'
(R):5'- AACAGTCTTTGGGGTGTGAC -3'

Posted On

2018-08-29