Incidental Mutation 'R6789:Trav9-2'
ID 532947
Institutional Source Beutler Lab
Gene Symbol Trav9-2
Ensembl Gene ENSMUSG00000094966
Gene Name T cell receptor alpha variable 9-2
Synonyms Gm16979
Accession Numbers
Essential gene? Probably non essential (E-score: 0.078) question?
Stock # R6789 (G1)
Quality Score 225.009
Status Not validated
Chromosome 14
Chromosomal Location 53828537-53828961 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 53828819 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Proline at position 63 (L63P)
Ref Sequence ENSEMBL: ENSMUSP00000100431 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103654]
AlphaFold A0A075B647
Predicted Effect possibly damaging
Transcript: ENSMUST00000103654
AA Change: L63P

PolyPhen 2 Score 0.763 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000100431
Gene: ENSMUSG00000094966
AA Change: L63P

DomainStartEndE-ValueType
IG 27 113 5e0 SMART
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.6%
  • 20x: 96.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 38 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aox1 T A 1: 58,343,644 (GRCm39) D442E probably benign Het
Arl6ip4 G A 5: 124,254,665 (GRCm39) G53R probably damaging Het
Asns T C 6: 7,675,344 (GRCm39) T553A probably benign Het
Atp1a1 T A 3: 101,493,614 (GRCm39) N497Y possibly damaging Het
Birc2 T C 9: 7,836,966 (GRCm39) probably benign Het
Catsperd C A 17: 56,961,426 (GRCm39) probably null Het
Dchs1 G T 7: 105,406,210 (GRCm39) Q2341K possibly damaging Het
Dydc2 C A 14: 40,771,296 (GRCm39) V128L probably benign Het
Dync2i2 A G 2: 29,923,284 (GRCm39) probably null Het
Efna3 C T 3: 89,223,769 (GRCm39) probably null Het
Fbn2 C T 18: 58,143,686 (GRCm39) E2790K probably benign Het
Fhip1a A T 3: 85,579,865 (GRCm39) L780* probably null Het
Gm11569 C A 11: 99,689,657 (GRCm39) probably benign Het
Gprc6a C T 10: 51,507,412 (GRCm39) G39D probably damaging Het
Igkv6-17 A G 6: 70,348,692 (GRCm39) D21G probably benign Het
Klra4 T C 6: 130,039,182 (GRCm39) Q70R probably damaging Het
Krtap31-2 C T 11: 99,827,549 (GRCm39) S127F possibly damaging Het
Lingo4 G T 3: 94,306,662 (GRCm39) probably benign Het
Lrp2bp A G 8: 46,466,151 (GRCm39) K87E possibly damaging Het
Macf1 A T 4: 123,266,231 (GRCm39) M5333K probably damaging Het
Mmp13 A T 9: 7,272,781 (GRCm39) Y47F probably benign Het
Muc16 G A 9: 18,471,282 (GRCm39) P7261S probably benign Het
Nostrin G T 2: 69,005,856 (GRCm39) M212I probably benign Het
Nr1h5 G A 3: 102,865,677 (GRCm39) T8M possibly damaging Het
Nup153 A T 13: 46,870,792 (GRCm39) L41H probably damaging Het
Or10b1 T C 10: 78,355,802 (GRCm39) L120P noncoding transcript Het
Or5b97 T A 19: 12,878,653 (GRCm39) I164L probably benign Het
Pappa A T 4: 65,099,278 (GRCm39) D599V probably damaging Het
Pcdh18 G A 3: 49,710,364 (GRCm39) T317I probably benign Het
Pcsk5 T A 19: 17,434,150 (GRCm39) N1406I possibly damaging Het
Pik3c2a A T 7: 115,961,419 (GRCm39) Y1027N probably damaging Het
Prpf6 T A 2: 181,257,844 (GRCm39) Y105* probably null Het
Rab5a C T 17: 53,804,650 (GRCm39) P87S probably damaging Het
Rnf8 T A 17: 29,854,843 (GRCm39) W433R probably damaging Het
Slc18b1 T A 10: 23,692,227 (GRCm39) V232D probably benign Het
Taf11 C A 17: 28,126,492 (GRCm39) A52S probably benign Het
Thoc2l T C 5: 104,665,555 (GRCm39) F26L probably benign Het
Zfat T C 15: 67,956,235 (GRCm39) Y1199C probably damaging Het
Other mutations in Trav9-2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00340:Trav9-2 APN 14 53,828,840 (GRCm39) missense probably benign 0.00
IGL01519:Trav9-2 APN 14 53,828,809 (GRCm39) missense probably damaging 0.98
R4979:Trav9-2 UTSW 14 53,828,695 (GRCm39) missense probably damaging 0.99
R8274:Trav9-2 UTSW 14 53,828,810 (GRCm39) missense probably benign 0.22
R8733:Trav9-2 UTSW 14 53,828,755 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTGCACTACAGTTCCTGACC -3'
(R):5'- AGATCTTGATTCTGAGCACCC -3'

Sequencing Primer
(F):5'- GCACTACAGTTCCTGACCTAATATTC -3'
(R):5'- TGATTCTGAGCACCCACGGC -3'
Posted On 2018-08-29