Mutagenetix > Incidental Mutation

Incidental Mutation 'R6801:Suv39h2'

533318

Institutional Source

Beutler Lab

Gene Symbol

Suv39h2

Ensembl Gene

ENSMUSG00000026646

Gene Name

suppressor of variegation 3-9 2

Synonyms

4930507K23Rik, D2Ertd544e, Suv39h histone methyltransferase, KMT1B

MMRRC Submission

044914-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6801 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

3456852-3476068 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 3465458 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Lysine at position 299 (R299K)

Ref Sequence

ENSEMBL: ENSMUSP00000027956 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027956] [ENSMUST00000060618] [ENSMUST00000061852] [ENSMUST00000100463] [ENSMUST00000115066] [ENSMUST00000127540]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000027956
AA Change: R299K

PolyPhen 2 Score 0.158 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000027956
Gene: ENSMUSG00000026646
AA Change: R299K

Domain	Start	End	E-Value	Type
low complexity region	2	47	N/A	INTRINSIC
CHROMO	117	169	2.44e-11	SMART
Pfam:Pre-SET	212	309	4.4e-18	PFAM
SET	317	446	4.05e-41	SMART
PostSET	461	477	7.05e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000060618

SMART Domains

Protein: ENSMUSP00000054169
Gene: ENSMUSG00000026646

Domain	Start	End	E-Value	Type
low complexity region	2	47	N/A	INTRINSIC
SET	70	226	6.61e-23	SMART
PostSET	241	257	7.05e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000061852

SMART Domains

Protein: ENSMUSP00000054300
Gene: ENSMUSG00000026648

Domain	Start	End	E-Value	Type
Lactamase_B	10	193	7.78e0	SMART
Pfam:DRMBL	239	345	1.6e-22	PFAM
low complexity region	383	400	N/A	INTRINSIC
low complexity region	463	477	N/A	INTRINSIC
low complexity region	593	601	N/A	INTRINSIC

Predicted Effect

SMART Domains

Protein: ENSMUSP00000098026
Gene: ENSMUSG00000026646
AA Change: R196K

Domain	Start	End	E-Value	Type
CHROMO	6	67	2e-7	SMART
Pfam:Pre-SET	110	207	1.3e-17	PFAM
SET	215	344	4.05e-41	SMART
PostSET	359	375	7.05e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000100463

SMART Domains

Protein: ENSMUSP00000098031
Gene: ENSMUSG00000026648

Domain	Start	End	E-Value	Type
Lactamase_B	10	193	7.78e0	SMART
Pfam:DRMBL	239	345	6.5e-23	PFAM
low complexity region	476	484	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000115066

SMART Domains

Protein: ENSMUSP00000110718
Gene: ENSMUSG00000026648

Domain	Start	End	E-Value	Type
Blast:Lactamase_B	25	70	1e-19	BLAST
Pfam:DRMBL	109	215	1.1e-22	PFAM
low complexity region	253	270	N/A	INTRINSIC
low complexity region	333	347	N/A	INTRINSIC
low complexity region	463	471	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127540

SMART Domains

Protein: ENSMUSP00000125485
Gene: ENSMUSG00000026646

Domain	Start	End	E-Value	Type
low complexity region	2	47	N/A	INTRINSIC

Meta Mutation Damage Score

0.0755

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.8%

Validation Efficiency

100% (49/49)

MGI Phenotype

PHENOTYPE: Less than 5% of mice either heterozygous or homozygous for a reporter/null allele develop late-onset B cell lymphomas. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam3	T	A	8: 25,174,680 (GRCm39)	Y695F	possibly damaging	Het
Arhgap20	A	G	9: 51,759,892 (GRCm39)	D545G	probably damaging	Het
Arhgef11	A	G	3: 87,643,159 (GRCm39)	E1457G	possibly damaging	Het
Atp2b4	T	A	1: 133,655,524 (GRCm39)	I747F	probably damaging	Het
Bche	T	A	3: 73,609,133 (GRCm39)	I98L	probably benign	Het
C2cd6	TC	T	1: 59,133,742 (GRCm39)		probably null	Het
Ccdc90b	A	G	7: 92,216,943 (GRCm39)	T72A	probably benign	Het
Chrd	A	G	16: 20,554,497 (GRCm39)	E352G	possibly damaging	Het
Csmd2	A	G	4: 128,277,743 (GRCm39)	E953G	probably benign	Het
Dchs2	T	A	3: 83,035,841 (GRCm39)	M196K	probably benign	Het
Ddx10	G	A	9: 53,159,207 (GRCm39)	Q33*	probably null	Het
Dennd4b	T	A	3: 90,176,086 (GRCm39)	V201E	probably damaging	Het
Fbn2	T	A	18: 58,246,420 (GRCm39)	H494L	probably benign	Het
Fbxw13	G	A	9: 109,023,795 (GRCm39)	A83V	probably null	Het
Fxr1	A	G	3: 34,108,452 (GRCm39)	D321G	possibly damaging	Het
Galm	A	G	17: 80,489,053 (GRCm39)	H233R	probably benign	Het
Gm7298	A	G	6: 121,752,768 (GRCm39)	T837A	probably benign	Het
Gmppa	C	G	1: 75,418,391 (GRCm39)	S258C	possibly damaging	Het
Hk1	T	G	10: 62,116,910 (GRCm39)	E645A	probably damaging	Het
Igkv1-132	A	G	6: 67,737,324 (GRCm39)	T97A	probably damaging	Het
Kcnc1	T	C	7: 46,084,716 (GRCm39)	F547L	probably damaging	Het
Lama5	G	A	2: 179,833,455 (GRCm39)	P1519L	probably damaging	Het
Lingo2	T	A	4: 35,709,566 (GRCm39)	E138V	probably damaging	Het
Myb	T	C	10: 21,020,865 (GRCm39)		probably null	Het
Mybl1	A	G	1: 9,753,353 (GRCm39)	V243A	probably benign	Het
Mylk4	C	T	13: 32,912,393 (GRCm39)	S189N	probably benign	Het
Or13c7	T	A	4: 43,855,206 (GRCm39)	L299*	probably null	Het
Or2y16	A	G	11: 49,335,169 (GRCm39)	M164V	probably benign	Het
Or4k77	A	T	2: 111,199,394 (GRCm39)	Q139L	probably benign	Het
Or4x12-ps1	A	T	2: 89,915,953 (GRCm39)	I284N	probably damaging	Het
Or5w1b	A	G	2: 87,475,667 (GRCm39)	Y267H	probably benign	Het
Or8g19	A	T	9: 39,055,506 (GRCm39)	I37F	probably benign	Het
Oxld1	A	T	11: 120,347,650 (GRCm39)	D182E	probably damaging	Het
Phf13	A	T	4: 152,076,017 (GRCm39)	L295Q	probably damaging	Het
Prrc2c	TTGCTGCTGCTGCTGCTGCTGCTGCTGC	TTGCTGCTGCTGCTGCTGCTGCTGC	1: 162,536,630 (GRCm39)		probably benign	Het
Prss33	A	G	17: 24,053,813 (GRCm39)	L88P	possibly damaging	Het
Ralgds	A	G	2: 28,438,448 (GRCm39)	Y596C	probably damaging	Het
Rftn2	A	G	1: 55,233,418 (GRCm39)	I379T	possibly damaging	Het
Rnf214	C	T	9: 45,807,403 (GRCm39)	E267K	probably damaging	Het
Rpp14	T	C	14: 8,083,717 (GRCm38)		probably benign	Het
Rpusd2	A	G	2: 118,865,876 (GRCm39)	Y191C	probably damaging	Het
Serpinb9c	T	A	13: 33,341,807 (GRCm39)	M1L	probably benign	Het
Shroom3	A	G	5: 93,088,795 (GRCm39)	D434G	probably damaging	Het
Smc5	G	A	19: 23,192,010 (GRCm39)	S888L	probably benign	Het
Trappc4	A	T	9: 44,315,685 (GRCm39)	I176N	probably damaging	Het
Trim12c	A	T	7: 103,997,337 (GRCm39)	V73E	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het

Other mutations in Suv39h2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01380:Suv39h2	APN	2	3,465,296 (GRCm39)	splice site	probably benign
IGL03408:Suv39h2	APN	2	3,460,913 (GRCm39)	missense	probably damaging	1.00
R0060:Suv39h2	UTSW	2	3,465,953 (GRCm39)	missense	probably damaging	1.00
R0060:Suv39h2	UTSW	2	3,465,953 (GRCm39)	missense	probably damaging	1.00
R0511:Suv39h2	UTSW	2	3,473,616 (GRCm39)	missense	probably damaging	0.99
R1892:Suv39h2	UTSW	2	3,460,805 (GRCm39)	missense	probably damaging	1.00
R1919:Suv39h2	UTSW	2	3,465,353 (GRCm39)	missense	probably damaging	1.00
R3888:Suv39h2	UTSW	2	3,465,845 (GRCm39)	missense	probably benign	0.09
R5583:Suv39h2	UTSW	2	3,475,890 (GRCm39)	unclassified	probably benign
R6770:Suv39h2	UTSW	2	3,473,588 (GRCm39)	missense	possibly damaging	0.52
R7607:Suv39h2	UTSW	2	3,475,866 (GRCm39)	missense	unknown
R7914:Suv39h2	UTSW	2	3,465,453 (GRCm39)	nonsense	probably null
R9557:Suv39h2	UTSW	2	3,475,451 (GRCm39)	missense
R9781:Suv39h2	UTSW	2	3,463,631 (GRCm39)	missense	probably benign	0.01
X0062:Suv39h2	UTSW	2	3,465,822 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GGATTTCTACATATCCGCAAATGAC -3'
(R):5'- ATTAACGAGTACAGGCCAGC -3'

Sequencing Primer
(F):5'- TCTACATATCCGCAAATGACAACATC -3'
(R):5'- GCTCCCGGGATCAGCATAAAC -3'

Posted On

2018-09-12