Incidental Mutation 'R6833:Lpcat3'
ID 534436
Institutional Source Beutler Lab
Gene Symbol Lpcat3
Ensembl Gene ENSMUSG00000004270
Gene Name lysophosphatidylcholine acyltransferase 3
Synonyms Oact5, Mboat5, Grcc3f
MMRRC Submission 044942-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.158) question?
Stock # R6833 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 124639887-124681142 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 124676974 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Cysteine at position 124 (Y124C)
Ref Sequence ENSEMBL: ENSMUSP00000004381 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000004379] [ENSMUST00000004381] [ENSMUST00000128721]
AlphaFold Q91V01
Predicted Effect probably benign
Transcript: ENSMUST00000004379
SMART Domains Protein: ENSMUSP00000004379
Gene: ENSMUSG00000004268

DomainStartEndE-ValueType
Pfam:EMG1 45 238 2.9e-87 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000004381
AA Change: Y124C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000004381
Gene: ENSMUSG00000004270
AA Change: Y124C

DomainStartEndE-ValueType
transmembrane domain 40 62 N/A INTRINSIC
transmembrane domain 69 91 N/A INTRINSIC
Pfam:MBOAT 126 437 1.2e-81 PFAM
transmembrane domain 454 473 N/A INTRINSIC
Predicted Effect silent
Transcript: ENSMUST00000128721
SMART Domains Protein: ENSMUSP00000144738
Gene: ENSMUSG00000004270

DomainStartEndE-ValueType
transmembrane domain 41 63 N/A INTRINSIC
transmembrane domain 73 95 N/A INTRINSIC
Meta Mutation Damage Score 0.8008 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.4%
  • 20x: 98.0%
Validation Efficiency 96% (54/56)
MGI Phenotype PHENOTYPE: Nullizygous mice show low blood glucose levels and postnatal death. Intestine-specific knockouts fail to thrive and show enterocyte lipid accumulation and low plasma triglycerides (TGs). Liver-specific knockouts show low plasma TGs, fatty liver, and secrete VLDL lacking arachidonoyl phospholipids. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A830018L16Rik T A 1: 11,658,733 (GRCm39) W215R probably damaging Het
Aco1 A G 4: 40,164,747 (GRCm39) K79R probably benign Het
Adam28 C T 14: 68,855,576 (GRCm39) A630T probably benign Het
Alpk2 T C 18: 65,439,480 (GRCm39) K1105E probably benign Het
Angptl1 A T 1: 156,672,263 (GRCm39) I30L probably benign Het
Astn1 A T 1: 158,491,692 (GRCm39) Q47L probably benign Het
Atf6b T C 17: 34,868,131 (GRCm39) S135P probably damaging Het
Ccdc122 G T 14: 77,326,371 (GRCm39) probably benign Het
Cers3 T C 7: 66,429,419 (GRCm39) probably null Het
Dcaf10 T C 4: 45,373,043 (GRCm39) C95R probably damaging Het
Dcxr A G 11: 120,616,917 (GRCm39) Y149H probably damaging Het
Dmxl1 A T 18: 50,088,890 (GRCm39) I2790F probably damaging Het
Dnhd1 T A 7: 105,352,580 (GRCm39) C2578S probably benign Het
Dnttip2 T C 3: 122,070,452 (GRCm39) S556P probably damaging Het
Efr3a T G 15: 65,714,535 (GRCm39) V301G probably damaging Het
Eml5 A T 12: 98,853,283 (GRCm39) H105Q probably damaging Het
Enpp3 T A 10: 24,685,768 (GRCm39) H44L probably damaging Het
Fam120a A G 13: 49,087,517 (GRCm39) V281A probably damaging Het
Fat3 C T 9: 15,826,357 (GRCm39) E4532K possibly damaging Het
Ferd3l G A 12: 33,978,537 (GRCm39) V17I probably damaging Het
Glb1l A G 1: 75,178,397 (GRCm39) V347A possibly damaging Het
Gm4846 A T 1: 166,322,147 (GRCm39) I140N possibly damaging Het
Gm9195 T C 14: 72,671,856 (GRCm39) T2586A possibly damaging Het
Hsd17b8 T C 17: 34,246,191 (GRCm39) S161G probably damaging Het
Hsp90ab1 T C 17: 45,881,393 (GRCm39) I250V probably benign Het
Il11ra1 A G 4: 41,765,454 (GRCm39) H183R probably benign Het
Lama3 G A 18: 12,624,605 (GRCm39) C1450Y probably damaging Het
Lgals7 G A 7: 28,565,087 (GRCm39) R75Q probably damaging Het
Lrrc8a T A 2: 30,145,659 (GRCm39) S158T possibly damaging Het
Mcm3 A T 1: 20,880,320 (GRCm39) M504K possibly damaging Het
Mro G T 18: 73,997,003 (GRCm39) probably benign Het
Mybpc3 A G 2: 90,955,773 (GRCm39) probably null Het
Myh14 T A 7: 44,273,803 (GRCm39) K1356* probably null Het
Myo5b A C 18: 74,903,396 (GRCm39) Q1804P probably benign Het
Nol10 A G 12: 17,402,728 (GRCm39) I67V probably benign Het
Pam T A 1: 97,765,717 (GRCm39) I771F probably damaging Het
Pcdhgb8 G T 18: 37,895,142 (GRCm39) A71S probably benign Het
Pmfbp1 T C 8: 110,265,307 (GRCm39) probably null Het
Poc1b C T 10: 99,028,666 (GRCm39) A336V probably benign Het
Poglut3 A G 9: 53,303,308 (GRCm39) I67V possibly damaging Het
Prap1 C A 7: 139,674,995 (GRCm39) A20E possibly damaging Het
Prox1 G A 1: 189,892,975 (GRCm39) A490V probably damaging Het
Prss39 G T 1: 34,537,697 (GRCm39) V54F possibly damaging Het
Sema3b T A 9: 107,480,515 (GRCm39) E144V probably benign Het
Sft2d1 C T 17: 8,537,707 (GRCm39) T32I possibly damaging Het
Smpd2 C T 10: 41,364,442 (GRCm39) A160T probably damaging Het
Stard9 G T 2: 120,531,740 (GRCm39) V2666F probably damaging Het
Syt7 T A 19: 10,421,508 (GRCm39) M400K probably damaging Het
Thoc5 T C 11: 4,869,804 (GRCm39) L402P probably damaging Het
Tinf2 A T 14: 55,919,037 (GRCm39) M1K probably null Het
Ttc21a A G 9: 119,771,701 (GRCm39) I167V probably benign Het
Vldlr T C 19: 27,217,974 (GRCm39) L474P probably damaging Het
Xirp2 T C 2: 67,340,294 (GRCm39) V845A probably benign Het
Zdhhc7 A T 8: 120,811,663 (GRCm39) M180K probably damaging Het
Zfp735 G A 11: 73,601,434 (GRCm39) G126D probably damaging Het
Other mutations in Lpcat3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01310:Lpcat3 APN 6 124,676,301 (GRCm39) missense possibly damaging 0.78
IGL02279:Lpcat3 APN 6 124,675,072 (GRCm39) missense probably damaging 1.00
IGL02869:Lpcat3 APN 6 124,679,970 (GRCm39) missense possibly damaging 0.65
R0045:Lpcat3 UTSW 6 124,678,437 (GRCm39) missense probably benign 0.12
R0045:Lpcat3 UTSW 6 124,678,437 (GRCm39) missense probably benign 0.12
R2075:Lpcat3 UTSW 6 124,680,066 (GRCm39) missense probably damaging 1.00
R3757:Lpcat3 UTSW 6 124,676,955 (GRCm39) splice site probably null
R4181:Lpcat3 UTSW 6 124,680,187 (GRCm39) unclassified probably benign
R4583:Lpcat3 UTSW 6 124,680,286 (GRCm39) missense possibly damaging 0.92
R5134:Lpcat3 UTSW 6 124,679,493 (GRCm39) missense probably benign 0.00
R5159:Lpcat3 UTSW 6 124,676,357 (GRCm39) intron probably benign
R6703:Lpcat3 UTSW 6 124,640,185 (GRCm39) missense probably benign 0.02
R7261:Lpcat3 UTSW 6 124,675,050 (GRCm39) missense probably benign 0.02
R7604:Lpcat3 UTSW 6 124,679,493 (GRCm39) missense probably benign 0.00
R9399:Lpcat3 UTSW 6 124,640,283 (GRCm39) missense probably benign 0.00
R9620:Lpcat3 UTSW 6 124,680,543 (GRCm39) missense probably damaging 0.99
R9756:Lpcat3 UTSW 6 124,679,967 (GRCm39) critical splice acceptor site probably null
X0017:Lpcat3 UTSW 6 124,675,081 (GRCm39) missense possibly damaging 0.49
Predicted Primers PCR Primer
(F):5'- GTAACGCCCCTGTTTGTAGG -3'
(R):5'- GTGGAGCATGACATCAGTATGG -3'

Sequencing Primer
(F):5'- CTCTCAAGTGCCAGGATTCTAGG -3'
(R):5'- ACATCAGTATGGTTTATTTTGGCTC -3'
Posted On 2018-09-12