Mutagenetix > Incidental Mutation

Incidental Mutation 'R6833:Sft2d1'

534462

Institutional Source

Beutler Lab

Gene Symbol

Sft2d1

Ensembl Gene

ENSMUSG00000073468

Gene Name

SFT2 domain containing 1

Synonyms

5630401J11Rik

MMRRC Submission

044942-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.157) question?

Stock #

R6833 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

8529934-8546274 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 8537707 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 32 (T32I)

Ref Sequence

ENSEMBL: ENSMUSP00000117294 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000130782] [ENSMUST00000145276] [ENSMUST00000154553]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000130782

Predicted Effect

probably benign
Transcript: ENSMUST00000145276

Predicted Effect

possibly damaging
Transcript: ENSMUST00000154553
AA Change: T32I

PolyPhen 2 Score 0.907 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000117294
Gene: ENSMUSG00000073468
AA Change: T32I

Domain	Start	End	E-Value	Type
Pfam:Got1	43	154	3.5e-41	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

96% (54/56)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A830018L16Rik	T	A	1: 11,658,733 (GRCm39)	W215R	probably damaging	Het
Aco1	A	G	4: 40,164,747 (GRCm39)	K79R	probably benign	Het
Adam28	C	T	14: 68,855,576 (GRCm39)	A630T	probably benign	Het
Alpk2	T	C	18: 65,439,480 (GRCm39)	K1105E	probably benign	Het
Angptl1	A	T	1: 156,672,263 (GRCm39)	I30L	probably benign	Het
Astn1	A	T	1: 158,491,692 (GRCm39)	Q47L	probably benign	Het
Atf6b	T	C	17: 34,868,131 (GRCm39)	S135P	probably damaging	Het
Ccdc122	G	T	14: 77,326,371 (GRCm39)		probably benign	Het
Cers3	T	C	7: 66,429,419 (GRCm39)		probably null	Het
Dcaf10	T	C	4: 45,373,043 (GRCm39)	C95R	probably damaging	Het
Dcxr	A	G	11: 120,616,917 (GRCm39)	Y149H	probably damaging	Het
Dmxl1	A	T	18: 50,088,890 (GRCm39)	I2790F	probably damaging	Het
Dnhd1	T	A	7: 105,352,580 (GRCm39)	C2578S	probably benign	Het
Dnttip2	T	C	3: 122,070,452 (GRCm39)	S556P	probably damaging	Het
Efr3a	T	G	15: 65,714,535 (GRCm39)	V301G	probably damaging	Het
Eml5	A	T	12: 98,853,283 (GRCm39)	H105Q	probably damaging	Het
Enpp3	T	A	10: 24,685,768 (GRCm39)	H44L	probably damaging	Het
Fam120a	A	G	13: 49,087,517 (GRCm39)	V281A	probably damaging	Het
Fat3	C	T	9: 15,826,357 (GRCm39)	E4532K	possibly damaging	Het
Ferd3l	G	A	12: 33,978,537 (GRCm39)	V17I	probably damaging	Het
Glb1l	A	G	1: 75,178,397 (GRCm39)	V347A	possibly damaging	Het
Gm4846	A	T	1: 166,322,147 (GRCm39)	I140N	possibly damaging	Het
Gm9195	T	C	14: 72,671,856 (GRCm39)	T2586A	possibly damaging	Het
Hsd17b8	T	C	17: 34,246,191 (GRCm39)	S161G	probably damaging	Het
Hsp90ab1	T	C	17: 45,881,393 (GRCm39)	I250V	probably benign	Het
Il11ra1	A	G	4: 41,765,454 (GRCm39)	H183R	probably benign	Het
Lama3	G	A	18: 12,624,605 (GRCm39)	C1450Y	probably damaging	Het
Lgals7	G	A	7: 28,565,087 (GRCm39)	R75Q	probably damaging	Het
Lpcat3	A	G	6: 124,676,974 (GRCm39)	Y124C	probably damaging	Het
Lrrc8a	T	A	2: 30,145,659 (GRCm39)	S158T	possibly damaging	Het
Mcm3	A	T	1: 20,880,320 (GRCm39)	M504K	possibly damaging	Het
Mro	G	T	18: 73,997,003 (GRCm39)		probably benign	Het
Mybpc3	A	G	2: 90,955,773 (GRCm39)		probably null	Het
Myh14	T	A	7: 44,273,803 (GRCm39)	K1356*	probably null	Het
Myo5b	A	C	18: 74,903,396 (GRCm39)	Q1804P	probably benign	Het
Nol10	A	G	12: 17,402,728 (GRCm39)	I67V	probably benign	Het
Pam	T	A	1: 97,765,717 (GRCm39)	I771F	probably damaging	Het
Pcdhgb8	G	T	18: 37,895,142 (GRCm39)	A71S	probably benign	Het
Pmfbp1	T	C	8: 110,265,307 (GRCm39)		probably null	Het
Poc1b	C	T	10: 99,028,666 (GRCm39)	A336V	probably benign	Het
Poglut3	A	G	9: 53,303,308 (GRCm39)	I67V	possibly damaging	Het
Prap1	C	A	7: 139,674,995 (GRCm39)	A20E	possibly damaging	Het
Prox1	G	A	1: 189,892,975 (GRCm39)	A490V	probably damaging	Het
Prss39	G	T	1: 34,537,697 (GRCm39)	V54F	possibly damaging	Het
Sema3b	T	A	9: 107,480,515 (GRCm39)	E144V	probably benign	Het
Smpd2	C	T	10: 41,364,442 (GRCm39)	A160T	probably damaging	Het
Stard9	G	T	2: 120,531,740 (GRCm39)	V2666F	probably damaging	Het
Syt7	T	A	19: 10,421,508 (GRCm39)	M400K	probably damaging	Het
Thoc5	T	C	11: 4,869,804 (GRCm39)	L402P	probably damaging	Het
Tinf2	A	T	14: 55,919,037 (GRCm39)	M1K	probably null	Het
Ttc21a	A	G	9: 119,771,701 (GRCm39)	I167V	probably benign	Het
Vldlr	T	C	19: 27,217,974 (GRCm39)	L474P	probably damaging	Het
Xirp2	T	C	2: 67,340,294 (GRCm39)	V845A	probably benign	Het
Zdhhc7	A	T	8: 120,811,663 (GRCm39)	M180K	probably damaging	Het
Zfp735	G	A	11: 73,601,434 (GRCm39)	G126D	probably damaging	Het

Other mutations in Sft2d1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00419:Sft2d1	APN	17	8,539,437 (GRCm39)	missense	possibly damaging	0.95
PIT4131001:Sft2d1	UTSW	17	8,609,863 (GRCm39)	missense	possibly damaging	0.46
R0244:Sft2d1	UTSW	17	8,538,254 (GRCm39)	missense	probably benign	0.05
R0571:Sft2d1	UTSW	17	8,545,782 (GRCm39)	splice site	probably benign
R1263:Sft2d1	UTSW	17	8,539,470 (GRCm39)	missense	probably benign	0.01
R3922:Sft2d1	UTSW	17	8,537,714 (GRCm39)	missense	possibly damaging	0.78
R4388:Sft2d1	UTSW	17	8,539,469 (GRCm39)	missense	possibly damaging	0.82
R5854:Sft2d1	UTSW	17	8,539,485 (GRCm39)	missense	probably damaging	0.98
R7188:Sft2d1	UTSW	17	8,542,164 (GRCm39)	missense	possibly damaging	0.59
R9417:Sft2d1	UTSW	17	8,542,139 (GRCm39)	missense	probably damaging	0.99
R9663:Sft2d1	UTSW	17	8,545,812 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GAGTCAGGTCCATGTTAACAATGAATG -3'
(R):5'- CACTTATTAAAGGTCACTGTGTTCC -3'

Sequencing Primer
(F):5'- TCTATGAGTTCAAGGCCAGC -3'
(R):5'- GGTCACTGTGTTCCATCAAAATAATC -3'

Posted On

2018-09-12